D MUT_NUC_111416

450

50433

4.9

tubulin beta-3 chain [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step05.12848.12848.3	3.8482	0.3779	1824.038	1824.025	1	1229.2	48.4%	1	R.EIVHIQAGQCGNQIGAK.F	3 3 3 3 3
2	step03.12158.12158.2	3.7049	0.3648	1824.603	1824.025	1	633.2	62.5%	1	R.EIVHIQAGQCGNQIGAK.F	2 2 2 2 2
	step02.16205.16205.2	4.0792	0.3727	1617.585	1616.8616	1	867.2	71.4%	3	R.AILVDLEPGTMDSVR.S	2 2 2
	step02.14553.14553.2	2.882	0.4467	1631.982	1632.861	1	984.5	78.6%	3	R.AILVDLEPGTM*DSVR.S	2 2 2
	step04.18259.18259.2	7.242	0.5114	1960.672	1960.1339	1	3444.4	82.4%	5	K.GHYTEGAELVDSVLDVVR.K	2 2 2 2
	step04.18066.18066.2	5.2822	0.5142	2087.946	2088.307	1	2479.4	77.8%	4	K.GHYTEGAELVDSVLDVVRK.E	2 2 2 2
	step03.17760.17760.3	4.4987	0.442	2088.543	2088.307	1	1107.2	51.4%	2	K.GHYTEGAELVDSVLDVVRK.E	3 3 3 3
	step05.14828.14828.2	3.9773	0.382	1320.343	1320.5828	1	1474.4	86.4%	2	R.IMNTFSVVPSPK.V	2 2 2 2
	step03.13670.13670.2	2.3393	0.1217	1417.881	1416.562	13	319.4	42.4%	1	R.IM*NTFS#VVPSPK.V	2 2 2 2
	step03.13345.13345.2	2.7217	0.3898	1130.843	1131.2664	1	1043.8	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2 2
	step06.16523.16523.2	2.4043	0.2616	1259.535	1259.4392	1	704.5	75.0%	2	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2 2
	step06.18553.18553.1	1.9652	0.2714	1143.867	1144.4148	22	248.2	61.1%	1	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1 1
	step05.15742.15742.2	3.6737	0.49	1144.031	1144.4148	1	998.4	94.4%	4	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
	step06.17302.17302.2	3.5975	0.3477	1160.506	1160.4142	1	998.9	88.9%	2	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2
	step02.17722.17722.2	2.6845	0.389	1692.723	1692.9581	1	758.8	71.4%	1	R.ALTVPELTQQMFDAK.N	2 2 2
	step04.16390.16390.2	2.621	0.3132	1070.346	1070.266	1	764.9	93.8%	1	R.YLTVATVFR.G	2 2
	step03.16237.16237.2	4.1703	0.413	1698.517	1697.8715	1	1109.5	80.8%	4	K.NSSYFVEWIPNNVK.V	2 2 2 2 2 2
	step06.19040.19040.2	3.0779	0.3746	1386.349	1386.6045	1	736.4	90.0%	1	K.RISEQFTAMFR.R	2 2 2 2 2
	step03.15825.15825.2	3.2095	0.4143	1229.896	1230.4182	1	1392.8	94.4%	4	R.ISEQFTAMFR.R	2 2 2 2 2
	step03.13813.13813.2	2.4502	0.4155	1246.598	1246.4176	1	770.1	77.8%	2	R.ISEQFTAM*FR.R	2 2 2 2 2

gi|261399875|ref|NP_0

456

50352

7.9

T-complex protein 1 subunit eta isoform c [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.19529.19529.2	4.2795	0.1009	1866.705	1867.2848	1	1871.6	73.3%	1	K.MVVDAVMMLDDLLQLK.M	2 2
step02.15695.15695.2	2.4411	0.2926	1788.722	1790.0104	1	518.0	50.0%	1	K.VQGGALEDSQLVAGVAFK.K	2 2
step03.13872.13872.2	3.3566	0.396	1423.631	1422.5873	1	1163.4	77.3%	2	K.TFSYAGFEM*QPK.K	2 2 2
step03.18730.18730.3	4.8241	0.4286	2893.377	2893.196	1	529.1	30.4%	2	R.VHTVEDYQAIVDAEWNILYDKLEK.I	3 3 3
step02.16365.16365.2	3.9598	0.5269	1566.734	1566.7394	1	2287.3	84.6%	2	K.LPIGDVATQYFADR.D	2 2 2
step04.15240.15240.2	2.585	0.4574	1134.361	1134.2589	1	858.4	81.2%	2	R.YNFFTGCPK.A	2 2 2
step04.14728.14728.2	2.2613	0.3263	911.423	911.07404	1	586.4	91.7%	2	K.TCTFILR.G	2 2 2
step05.15322.15322.2	2.7409	0.3062	1156.349	1155.396	1	992.5	88.9%	1	R.SLHDAIMIVR.R	2 2 2
step03.20353.20353.3	6.0643	0.521	2658.701	2657.9954	1	1081.5	35.4%	7	R.INALTAASEAACLIVSVDETIKNPR.S	3 3 3

Similarities: gi|261399877|ref|NP_0(9:0)
gi|58331185|ref|NP_00(7:2)

gi|14389309|ref|NP_11

449

49895

5.1

tubulin alpha-1C chain [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17427.17427.2	4.3719	0.4627	1702.813	1702.9294	1	1153.6	78.6%	2	R.AVFVDLEPTVIDEVR.T	2 2 2
step02.17108.17108.2	2.9992	0.371	1086.321	1086.2638	1	981.6	93.8%	2	K.EIIDLVLDR.I	2 2 2
step03.13572.13572.2	2.6821	0.1924	1719.032	1719.8802	2	258.9	53.8%	2	R.NLDIERPTYTNLNR.L	2 2 2 2 2 2
step05.19497.19497.2	4.5081	0.5039	1489.618	1488.7548	1	1812.5	73.1%	6	R.LISQIVSSITASLR.F	2 2 2 2
step02.18275.18275.2	6.4085	0.5679	2411.873	2410.6665	1	1170.6	60.0%	5	R.FDGALNVDLTEFQTNLVPYPR.I	2 2 2 2 2 2
step06.19564.19564.2	3.6774	0.501	1757.616	1758.0531	1	1259.2	80.0%	2	R.IHFPLATYAPVISAEK.A	2 2 2 2 2
step04.15316.15316.1	2.3041	0.3382	1250.627	1250.4795	1	160.6	56.2%	1	K.YMACCLLYR.G	1 1 1 1 1
step04.14389.14389.2	2.8	0.4396	1265.801	1266.4789	1	707.3	87.5%	2	K.YM*ACCLLYR.G	2 2 2 2 2
step02.8702.8702.1	1.831	0.3344	1015.593	1016.1735	1	421.7	66.7%	1	K.DVNAAIATIK.T	1 1 1 1
step02.8709.8709.2	3.5629	0.3964	1015.768	1016.1735	1	1110.9	88.9%	2	K.DVNAAIATIK.T	2 2 2 2
step04.14516.14516.2	3.7532	0.4283	1825.674	1826.0858	1	822.8	67.6%	2	K.VGINYQPPTVVPGGDLAK.V	2 2 2 2 2 2
step02.13732.13732.2	2.4505	0.279	888.294	888.06573	2	792.2	100.0%	2	K.FDLMYAK.R	2 2 2 2 2 2 2

gi|5031753|ref|NP_005

449

49229

6.3

heterogeneous nuclear ribonucleoprotein H [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.6744.6744.2	5.2242	0.4313	2107.729	2108.2053	1	661.5	63.9%	4	R.EGRPSGEAFVELESEDEVK.L	2
*	step02.13658.13658.2	3.2476	0.3298	1351.192	1351.5106	1	927.8	80.0%	2	K.SNNVEM*DWVLK.H	2
*	step02.19880.19880.3	3.9055	0.2711	2906.49	2906.281	1	1090.6	33.0%	1	K.EEIVQFFSGLEIVPNGITLPVDFQGR.S	3
	step02.16731.16731.2	5.8707	0.4305	1843.742	1842.9838	1	2725.2	75.0%	3	R.STGEAFVQFASQEIAEK.A	2 2
	step02.12504.12504.2	3.0292	0.4065	1602.305	1602.7039	1	772.3	70.8%	2	R.DLNYCFSGMSDHR.Y	2 2
	step02.18500.18500.2	4.8899	0.4651	1997.783	1998.1838	1	1479.6	68.8%	2	R.ATENDIYNFFSPLNPVR.V	2 2
	step03.10220.10220.2	2.9718	0.4468	1093.169	1093.2181	1	1178.7	83.3%	5	R.VHIEIGPDGR.V	2 2 2
*	step04.16214.16214.2	4.5741	0.5176	2142.69	2143.301	1	1670.4	65.8%	1	R.YVELFLNSTAGASGGAYEHR.Y	2

Similarities: gi|148470397|ref|NP_0(2:6)
gi|74099697|ref|NP_00(3:5)

gi|7706326|ref|NP_057

125

14585

9.4

pre-mRNA branch site protein p14 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17283.17283.2	3.9485	0.5373	1417.585	1417.609	1	1678.3	86.4%	2	K.ITAEEMYDIFGK.Y	2
*	step04.13414.13416.2	4.6274	0.4358	1664.543	1664.7484	1	786.2	76.9%	1	K.NACDHLSGFNVCNR.Y	2
*	step06.19094.19094.2	2.4465	0.1039	1388.87	1388.5953	4	340.7	65.0%	1	R.YLVVLYYNANR.A	2

gi|4503521|ref|NP_001

29.4%

445

52221

6.0

eukaryotic translation initiation factor 3 subunit E [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19265.19265.2	5.6835	0.5164	2090.833	2091.391	1	3502.7	79.4%	1	K.LDLLSDTNMVDFAMDVYK.N	2
*	step02.18528.18530.2	6.4653	0.2819	2107.241	2107.3906	1	2999.0	85.3%	1	K.LDLLSDTNMVDFAM*DVYK.N	2
*	step02.17919.17919.2	4.3062	0.2436	2108.544	2107.3906	1	1065.9	58.8%	3	K.LDLLSDTNM*VDFAMDVYK.N	2
*	step02.16796.16796.2	6.0333	0.5493	2123.776	2123.39	1	2716.6	73.5%	4	K.LDLLSDTNMVDFAMDVYK.N	2
*	step02.17078.17078.2	3.1089	0.338	1116.507	1116.3119	1	705.8	87.5%	2	R.MLFDYLADK.H	2
*	step04.16164.16164.1	2.4343	0.4083	975.726	976.11115	1	391.0	75.0%	3	R.NALSSLWGK.L	1
*	step04.16110.16110.2	2.9701	0.1965	976.334	976.11115	1	1011.6	93.8%	2	R.NALSSLWGK.L	2
*	step02.19809.19809.2	5.4418	0.5407	2207.621	2208.5015	1	3068.1	69.4%	2	K.LASEILMQNWDAAMEDLTR.L	2
*	step02.19812.19814.3	6.3119	0.4399	2209.297	2208.5015	1	2602.3	50.0%	1	K.LASEILMQNWDAAMEDLTR.L	3
*	step04.14834.14834.2	6.8574	0.5857	2258.75	2258.475	1	2411.3	76.3%	3	R.LKETIDNNSVSSPLQSLQQR.T	2
*	step02.12443.12443.2	3.3444	0.3269	2016.773	2017.1438	1	825.6	52.9%	1	K.ETIDNNSVSSPLQSLQQR.T	2
*	step04.14886.14886.2	2.7828	0.082	2257.043	2257.0835	146	206.2	20.0%	1	K.ET#IDNNS#VS#SPLQSLQQR.T	2
*	step03.12722.12722.1	1.9625	0.2585	1123.609	1124.312	1	613.4	72.2%	2	R.YLTTAVITNK.D	1
*	step04.17982.17982.2	3.5602	0.3541	1234.419	1233.4336	1	1196.7	93.8%	4	R.LFIFETFCR.I	2
*	step05.17244.17244.1	1.8276	0.1794	913.734	914.1293	1	269.2	83.3%	1	R.WIVNLIR.N	1
*	step06.17545.17545.2	6.4122	0.6012	2185.49	2184.5044	1	2039.4	68.4%	4	K.LGHVVMGNNAVSPYQQVIEK.T	2
*	step06.16764.16764.2	6.7473	0.5969	2201.864	2200.5037	1	2015.7	71.1%	3	K.LGHVVM*GNNAVSPYQQVIEK.T	2
*	step03.13698.13698.2	3.2958	0.1909	1165.936	1165.4094	1	1073.4	83.3%	2	R.SQMLAMNIEK.K	2

gi|310115369|ref|XP_0

29.4%

197

23444

8.3

PREDICTED: protein FAM115A-like isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18796.18796.2	2.5021	0.2221	1221.35	1221.3927	3	561.0	70.0%	2	K.GLWGPVHELGR.N	2 2 2
step05.16008.16010.2	3.2725	0.3291	1137.009	1137.3589	1	848.2	83.3%	1	R.ANIALWPPVR.E	2 2 2
step05.19940.19940.2	4.0627	0.4502	1818.608	1819.0967	1	1178.7	78.6%	4	K.NLAPFFEAWAWPIQK.E	2 2 2
step02.16932.16932.2	2.7237	0.3987	1507.888	1507.7118	1	717.0	66.7%	2	K.EVATSLAYLPEWK.E	2 2 2
step05.15870.15870.2	2.7545	0.2844	1116.367	1116.3583	1	1009.9	81.2%	2	K.LYLLTQMPH.-	2 2

Similarities: gi|310115367|ref|XP_0(4:1)
gi|7662276|ref|NP_055(5:0)

gi|16554609|ref|NP_07

29.4%

194

20616

10.8

28S ribosomal protein S11, mitochondrial isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18061.18061.2	2.9237	0.205	1325.577	1325.5807	1	860.8	80.0%	2	K.KFEEIPIAHIK.A	2
*	step04.15978.15978.3	8.4099	0.5939	3095.345	3094.292	1	2998.8	41.1%	2	K.ASHNNTQIQVVSASNEPLAFASCGTEGFR.N	3
	step06.16475.16475.2	3.4114	0.4113	1528.348	1528.739	1	1427.3	71.9%	1	K.KGTGIAAQTAGIAAAAR.A	2 2
	step04.12674.12674.2	4.1543	0.4748	1400.786	1400.5662	1	1310.0	70.0%	2	K.GTGIAAQTAGIAAAAR.A	2 2

Similarities: gi|28872740|ref|NP_78(2:2)

U	gi\|116256473\|ref\|NP_7	16	36	29.3%	629	72934	8.5	protein SCAI isoform 1 [Homo sapiens]
U	gi\|221554543\|ref\|NP_0	16	36	30.4%	606	70399	8.6	protein SCAI isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16413.16413.2	2.7661	0.088	1375.528	1375.542	1	813.7	85.0%	1	K.TVTDFCYLLDK.S	2
step06.18985.18985.2	3.4308	0.414	1490.721	1489.7014	1	1191.6	80.0%	2	K.IGQLYYHYYLR.T	2
step04.18441.18441.2	2.4148	0.3549	2087.815	2087.231	1	296.9	41.2%	1	R.TSETSYLNEAFSFYSAIR.Q	2
step03.14080.14080.2	3.7018	0.285	2055.711	2055.2769	1	861.7	56.2%	1	R.SYYSQVNKEDRPELVVK.K	2
step02.17111.17111.2	3.0026	0.4787	1245.313	1245.4296	1	1490.9	94.4%	2	K.FSELTVDMFR.M	2
step02.14122.14122.2	2.4426	0.2614	1261.401	1261.4291	1	676.4	83.3%	1	K.FSELTVDM*FR.M	2
step02.14019.14019.2	4.415	0.4849	1915.879	1915.9517	1	1658.4	73.5%	1	R.SDSEGPYDFGGVLTNSNR.D	2
step06.18839.18839.2	2.8019	0.3121	1874.183	1874.106	12	220.4	46.4%	2	K.EMHCLHPGDLYPFTR.K	2
step06.18157.18157.2	3.1776	0.4992	1889.626	1890.1053	1	615.4	67.9%	2	K.EM*HCLHPGDLYPFTR.K	2
step06.19152.19152.2	5.4906	0.5063	1782.68	1782.073	1	1385.8	86.7%	1	R.KPLFIIVDSSNSVAYK.N	2
step06.20875.20875.2	4.8667	0.5359	2381.894	2381.7478	1	1328.1	62.5%	5	K.NFTNLFGQPLVCLLSPTAYPK.A	2
step05.15315.15316.2	2.8796	0.4326	1155.63	1154.3014	1	1225.9	88.9%	2	R.DIAQLLTHSR.S	2
step03.20456.20456.2	6.1212	0.5662	1934.719	1934.1398	1	1842.5	73.3%	9	R.SIDQAFLQFFGDEFLR.L	2
step04.15548.15548.2	2.9166	0.3332	1133.119	1133.3391	1	562.8	81.2%	1	R.FIFCSATMR.M	2
step05.14522.14522.2	2.6203	0.2331	1149.3	1149.3385	1	663.9	87.5%	1	R.FIFCSATM*R.M	2
step04.18256.18256.2	4.8855	0.5591	1379.368	1379.63	1	1539.0	90.9%	4	K.HILELASILDVR.N	2

U	gi\|4506617\|ref\|NP_000	6	14	29.3%	184	21397	10.2	60S ribosomal protein L17 [Homo sapiens]
U	gi\|78000186\|ref\|NP_00	6	14	29.3%	184	21397	10.2	60S ribosomal protein L17 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.7802.7802.2	2.7585	0.2351	1164.357	1164.2467	1	853.0	77.8%	2	R.YSLDPENPTK.S	2
step05.17409.17409.2	3.0101	0.4082	1188.995	1189.4524	1	1411.8	83.3%	2	K.SAEFLLHMLK.N	2
step04.16588.16588.2	5.0079	0.3136	1780.576	1780.0155	1	1206.6	70.0%	2	K.GLDVDSLVIEHIQVNK.A	2
step04.16818.16819.2	5.6727	0.4834	2163.922	2164.5251	1	1155.5	70.6%	4	R.INPYMSSPCHIEMILTEK.E	2
step05.15990.15990.2	4.8299	0.4659	2180.877	2180.5244	1	1107.9	73.5%	2	R.INPYM*SSPCHIEMILTEK.E	2
step05.16464.16464.2	4.3227	0.3166	2180.919	2180.5244	1	363.6	58.8%	2	R.INPYMSSPCHIEM*ILTEK.E	2

U	gi\|14916501\|ref\|NP_14	4	11	29.2%	130	15069	10.9	40S ribosomal protein S24 isoform a [Homo sapiens]
U	gi\|4506703\|ref\|NP_001	4	11	28.6%	133	15423	10.8	40S ribosomal protein S24 isoform c [Homo sapiens]
U	gi\|214829241\|ref\|NP_0	4	11	29.0%	131	15197	10.9	40S ribosomal protein S24 isoform b [Homo sapiens]
U	gi\|214010226\|ref\|NP_0	4	11	13.1%	289	32431	10.2	40S ribosomal protein S24 isoform d [Homo sapiens]
U	gi\|214010224\|ref\|NP_0	4	11	29.0%	131	15197	10.9	40S ribosomal protein S24 isoform f [Homo sapiens]
U	gi\|214010222\|ref\|NP_0	4	11	28.8%	132	15325	10.9	40S ribosomal protein S24 isoform e [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.14218.14218.2	3.0309	0.3688	1236.388	1237.497	1	1247.1	85.0%	2	K.QMVIDVLHPGK.A	2
step03.18312.18312.2	3.6635	0.4197	1400.223	1399.6182	1	699.6	81.8%	5	K.TTPDVIFVFGFR.T	2
step02.17445.17445.2	3.1543	0.4535	1683.589	1682.8754	1	963.7	60.7%	2	K.TTGFGMIYDSLDYAK.K	2
step02.16060.16060.2	4.4674	0.5047	1699.744	1698.8748	1	1493.0	75.0%	2	K.TTGFGM*IYDSLDYAK.K	2

gi|4506681|ref|NP_001

29.1%

158

18431

10.3

40S ribosomal protein S11 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14628.14628.1	2.3919	0.2461	748.602	748.8929	1	300.9	83.3%	2	K.NIGLGFK.T	1
*	step04.13185.13185.2	3.282	0.3612	1151.522	1151.291	1	659.1	88.9%	2	K.CPFTGNVSIR.G	2
*	step06.18053.18053.2	2.5463	0.3804	1348.549	1348.5498	1	505.5	65.0%	1	K.NMSVHLSPCFR.D	2
*	step06.17088.17088.2	2.7173	0.2552	1364.091	1364.5492	1	841.8	80.0%	4	K.NM*SVHLSPCFR.D	2
*	step02.15440.15440.2	5.2045	0.4801	1988.168	1987.2373	1	1425.8	67.6%	6	R.DVQIGDIVTVGECRPLSK.T	2

U	gi\|17986258\|ref\|NP_06	4	7	29.1%	151	16930	4.7	myosin light polypeptide 6 isoform 1 [Homo sapiens]
U	gi\|88999583\|ref\|NP_52	4	7	29.1%	151	16961	4.6	myosin light polypeptide 6 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.10863.10863.2	2.4061	0.1779	1355.573	1355.5221	1	765.9	66.7%	1	R.ALGQNPTNAEVLK.V	2 2
step06.20786.20786.2	4.8872	0.5224	1888.325	1889.2501	1	1047.0	66.7%	3	K.VLDFEHFLPMLQTVAK.N	2
step05.18168.18168.2	3.8475	0.3779	1905.711	1905.2495	1	618.7	60.0%	2	K.VLDFEHFLPM*LQTVAK.N	2
step02.13496.13496.2	3.283	0.3204	1788.181	1787.865	1	450.7	57.1%	1	K.NKDQGTYEDYVEGLR.V	2

Similarities: gi|4505303|ref|NP_002(1:3)

gi|17921989|ref|NP_00

29.0%

448

49924

5.1

tubulin alpha-4A chain [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13572.13572.2	2.6821	0.1924	1719.032	1719.8802	2	258.9	53.8%	2	R.NLDIERPTYTNLNR.L	2 2 2 2 2 2
step05.19497.19497.2	4.5081	0.5039	1489.618	1488.7548	1	1812.5	73.1%	6	R.LISQIVSSITASLR.F	2 2 2 2
step02.18275.18275.2	6.4085	0.5679	2411.873	2410.6665	1	1170.6	60.0%	5	R.FDGALNVDLTEFQTNLVPYPR.I	2 2 2 2 2 2
step06.19564.19564.2	3.6774	0.501	1757.616	1758.0531	1	1259.2	80.0%	2	R.IHFPLATYAPVISAEK.A	2 2 2 2 2
step04.15316.15316.1	2.3041	0.3382	1250.627	1250.4795	1	160.6	56.2%	1	K.YMACCLLYR.G	1 1 1 1 1
step04.14389.14389.2	2.8	0.4396	1265.801	1266.4789	1	707.3	87.5%	2	K.YM*ACCLLYR.G	2 2 2 2 2
step06.19212.19212.2	4.8627	0.4233	1741.843	1741.9641	1	926.4	73.1%	1	K.RSIQFVDWCPTGFK.V	2 2
step03.16392.16392.2	4.7524	0.5485	1585.574	1585.7777	1	1510.1	79.2%	2	R.SIQFVDWCPTGFK.V	2 2
step04.14516.14516.2	3.7532	0.4283	1825.674	1826.0858	1	822.8	67.6%	2	K.VGINYQPPTVVPGGDLAK.V	2 2 2 2 2 2
step04.16965.16965.2	4.1928	0.3542	1866.329	1866.1254	1	2053.3	71.9%	1	R.AVCMLSNTTAIAEAWAR.L	2 2 2 2 2
step02.13732.13732.2	2.4505	0.279	888.294	888.06573	2	792.2	100.0%	2	K.FDLMYAK.R	2 2 2 2 2 2 2

gi|30795121|ref|NP_03

28.9%

532

60705

5.6

F-box/WD repeat-containing protein 8 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13132.13132.2	4.0337	0.3807	1555.664	1555.7198	1	1221.5	83.3%	2	R.RWQEELAQAQAPK.K	2 2
step02.8040.8040.2	2.7985	0.1312	1399.628	1399.5334	1	1849.8	90.9%	1	R.WQEELAQAQAPK.K	2 2
step02.16472.16472.2	3.09	0.3237	1392.848	1393.5688	1	1896.3	90.0%	1	K.VIAEDEVLWYR.L	2 2
step03.13384.13386.2	2.384	0.2446	966.341	966.1097	1	494.2	91.7%	1	K.LIFQECR.A	2 2
step02.18119.18119.3	3.6041	0.2227	3303.948	3304.4985	6	483.0	25.9%	1	R.TWDYVAPFLESEDEEDEPGM*QPNVSFVR.I	3 3
step02.15926.15926.2	2.8545	0.2273	1460.746	1460.6998	1	1251.9	81.8%	1	K.LVQYLEIVPETR.R	2 2
step06.20544.20544.2	4.3455	0.523	1852.038	1852.233	1	1945.8	78.1%	1	R.RYPVAVAAAGDLMYLLK.A	2 2
step06.19685.19685.2	3.6087	0.3463	1867.71	1868.2324	1	463.3	65.6%	1	R.RYPVAVAAAGDLM*YLLK.A	2 2
step03.19194.19194.2	5.2205	0.5142	1695.621	1696.0468	1	2602.9	83.3%	4	R.YPVAVAAAGDLMYLLK.A	2 2
step06.18025.18025.2	3.098	0.38	1467.559	1467.6556	1	1205.6	65.4%	2	R.SGNIALSLSAHQLR.V	2 2
step03.11666.11666.2	2.7922	0.4077	1277.487	1277.3252	1	1025.0	85.0%	2	R.NADLDSFTTHR.R	2 2
step02.17858.17858.2	3.7202	0.3262	2212.474	2212.483	1	604.6	41.7%	3	R.AYEFAVDQLAFQSPLPVCR.S	2 2
step03.17233.17233.2	5.1535	0.5558	2548.023	2547.7769	1	1280.9	52.4%	4	R.SSCDAMATHYYDLALAFPYNHV.-	2 2
step04.17158.17160.2	4.211	0.4573	2562.75	2563.7764	1	877.5	47.6%	3	R.SSCDAM*ATHYYDLALAFPYNHV.-	2 2

Similarities: gi|30795123|ref|NP_69(14:0)

gi|170763498|ref|NP_0

28.9%

277

32103

4.2

protein SET isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11042.11042.2	3.1716	0.1658	2329.901	2329.1033	59	173.7	26.7%	1	K.VS#KKELNSNHDGADET#S#EK.E	2
	step02.13215.13215.2	4.761	0.5355	2195.898	2196.2742	1	944.8	70.6%	4	K.EQQEAIEHIDEVQNEIDR.L	2 2
	step02.13227.13227.3	4.81	0.3651	2196.717	2196.2742	1	1743.9	47.1%	2	K.EQQEAIEHIDEVQNEIDR.L	3 3
	step02.18881.18881.3	6.049	0.4654	3450.815	3451.6543	1	2111.8	33.0%	8	K.EQQEAIEHIDEVQNEIDRLNEQASEEILK.V	3 3
	step02.7736.7736.1	2.8192	0.1697	1273.664	1274.4026	1	673.1	75.0%	1	R.LNEQASEEILK.V	1 1
	step02.13442.13442.2	5.5421	0.4093	1759.929	1758.9514	1	2117.7	82.1%	8	R.LNEQASEEILKVEQK.Y	2 2
	step02.13214.13214.3	3.9848	0.3757	1760.007	1758.9514	1	598.9	44.6%	1	R.LNEQASEEILKVEQK.Y	3 3
	step04.7164.7164.2	3.7964	0.3978	1209.415	1209.3274	1	1053.9	88.9%	29	R.VEVTEFEDIK.S	2 2 2
	step02.12539.12539.1	2.2956	0.0915	1209.739	1209.3274	6	678.0	66.7%	1	R.VEVTEFEDIK.S	1 1 1
	step02.13983.13983.2	3.7541	0.439	1672.632	1672.8171	1	1088.8	76.9%	2	R.VEVTEFEDIKSGYR.I	2 2 2
	step05.17264.17264.2	5.0603	0.3714	2304.829	2305.4424	1	1194.3	61.8%	8	K.SGYRIDFYFDENPYFENK.V	2 2
	step04.17250.17250.3	5.4607	0.4296	2305.778	2305.4424	1	2021.8	45.6%	1	K.SGYRIDFYFDENPYFENK.V	3 3
	step02.17306.17307.1	3.4001	0.0877	1841.541	1841.9528	1	671.3	61.5%	1	R.IDFYFDENPYFENK.V	1 1
	step02.17313.17313.3	4.638	0.448	1842.26	1841.9528	1	1801.5	51.9%	2	R.IDFYFDENPYFENK.V	3 3
	step03.16548.16549.2	5.3452	0.4236	1842.685	1841.9528	1	2287.2	80.8%	10	R.IDFYFDENPYFENK.V	2 2

Similarities: gi|170763500|ref|NP_0(14:1)
gi|310114661|ref|XP_0(3:12)

U	gi\|6005926\|ref\|NP_009	18	34	28.8%	475	53501	9.1	splicing factor U2AF 65 kDa subunit isoform a [Homo sapiens]
U	gi\|60279268\|ref\|NP_00	18	34	29.1%	471	53121	9.1	splicing factor U2AF 65 kDa subunit isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.16564.16564.2	3.7074	0.4914	2206.533	2206.5068	1	291.5	44.1%	2	K.YWDVPPPGFEHITPMQYK.A	2
step05.16061.16061.2	4.8685	0.5904	2222.67	2222.5063	1	433.3	58.8%	3	K.YWDVPPPGFEHITPM*QYK.A	2
step04.531.531.3	4.648	0.5431	2796.699	2796.237	1	1858.2	37.0%	2	R.LYVGNIPFGITEEAMMDFFNAQMR.L	3
step04.564.564.2	5.9697	0.6064	2796.772	2796.237	1	1848.9	54.3%	2	R.LYVGNIPFGITEEAMMDFFNAQMR.L	2
step03.20637.20638.2	4.2088	0.39	2812.711	2812.2366	1	1136.2	41.3%	1	R.LYVGNIPFGITEEAMMDFFNAQM*R.L	2
step03.18426.18426.2	4.42	0.3245	2827.97	2828.236	1	677.2	50.0%	2	R.LYVGNIPFGITEEAMMDFFNAQMR.L	2
step02.19512.19512.3	3.6308	0.2201	2828.712	2828.236	125	418.5	23.9%	1	R.LYVGNIPFGITEEAMMDFFNAQMR.L	3
step05.14955.14955.3	4.2735	0.2491	2134.474	2134.4219	1	1605.7	40.0%	1	R.LGGLTQAPGNPVLAVQINQDK.N	3
step03.17173.17173.2	3.0153	0.4049	1044.395	1044.1871	1	920.4	92.9%	2	K.NFAFLEFR.S	2
step02.17624.17624.3	5.4244	0.4321	2386.969	2387.6514	1	2614.6	47.6%	2	R.SVDETTQAMAFDGIIFQGQSLK.I	3
step02.17612.17612.2	5.7488	0.4641	2387.786	2387.6514	1	2307.0	59.5%	2	R.SVDETTQAMAFDGIIFQGQSLK.I	2
step02.16737.16737.2	4.8813	0.5412	2403.813	2403.651	1	1622.6	54.8%	2	R.SVDETTQAM*AFDGIIFQGQSLK.I	2
step02.16751.16751.3	5.4278	0.4729	2403.904	2403.651	1	2042.4	41.7%	2	R.SVDETTQAM*AFDGIIFQGQSLK.I	3
step02.17512.17512.2	3.4651	0.2579	1808.041	1807.0394	1	1021.8	70.0%	4	K.LFIGGLPNYLNDDQVK.E	2
step06.20922.20922.3	3.662	0.4127	2893.553	2893.3254	1	719.5	39.0%	1	K.LFIGGLPNYLNDDQVKELLTSFGPLK.A	3
step05.20147.20147.2	3.7804	0.3887	2894.228	2893.3254	1	818.2	42.0%	2	K.LFIGGLPNYLNDDQVKELLTSFGPLK.A	2
step03.15888.15888.2	2.8748	0.3207	1105.406	1105.3087	1	1362.0	88.9%	2	K.ELLTSFGPLK.A	2
step03.14421.14421.3	3.7327	0.4072	1910.275	1910.1545	1	1021.7	42.6%	1	K.SIEIPRPVDGVEVPGCGK.I	3

gi|310128738|ref|XP_0

28.8%

215

23515

7.0

PREDICTED: pyruvate kinase isozymes M1/M2-like isoform 5, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16689.16689.2	3.6207	0.3978	2466.796	2466.7715	1	353.8	40.9%	1	R.TATESFASDPILYRPVAVALDTK.G	2 2 2 2
step04.17211.17211.3	5.3865	0.4033	3018.825	3019.3977	1	957.8	36.1%	1	R.TATESFASDPILYRPVAVALDTKGPEIR.T	3 3 3 3
step02.14229.14229.2	3.3914	0.2872	1781.607	1780.914	1	755.1	61.8%	1	K.GADFLVTEVENGGSLGSK.K	2 2 2 2
step02.19893.19893.3	4.6448	0.473	1877.327	1877.11	1	1710.9	46.7%	2	K.FGVEQDVDM*VFASFIR.K	3 3 3 3

Similarities: gi|33286418|ref|NP_00(4:0)
gi|33286420|ref|NP_87(4:0)
gi|310128730|ref|XP_0(4:0)

gi|55956788|ref|NP_00

28.7%

710

76615

4.7

nucleolin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18180.18180.2	2.8271	0.4046	2568.938	2569.8535	1	143.1	31.8%	1	K.QKVEGTEPTTAFNLFVGNLNFNK.S	2
*	step05.18152.18152.3	4.9655	0.4288	2569.702	2569.8535	1	1703.7	40.9%	1	K.QKVEGTEPTTAFNLFVGNLNFNK.S	3
*	step04.18098.18098.2	5.1922	0.535	2313.552	2313.5508	1	1514.3	60.0%	6	K.VEGTEPTTAFNLFVGNLNFNK.S	2
*	step02.18714.18716.3	6.2011	0.4651	2314.229	2313.5508	1	2184.0	47.5%	1	K.VEGTEPTTAFNLFVGNLNFNK.S	3
*	step02.13044.13046.2	2.9281	0.3913	937.885	938.05963	1	604.4	87.5%	1	K.TGISDVFAK.N	2
*	step02.7850.7850.2	3.5358	0.3985	1000.812	1001.11896	1	1524.9	93.8%	2	K.NDLAVVDVR.I	2
*	step03.15404.15404.2	5.1713	0.3613	1777.723	1777.9086	1	3184.0	89.3%	5	R.KFGYVDFESAEDLEK.A	2
*	step02.15878.15878.2	5.1313	0.5164	1650.426	1649.7356	1	2121.9	88.5%	1	K.FGYVDFESAEDLEK.A	2
*	step02.13029.13029.2	2.7539	0.2535	845.383	845.0189	1	521.4	85.7%	2	K.ALELTGLK.V	2
*	step06.16854.16854.2	3.0765	0.204	1402.57	1402.6635	1	530.4	68.2%	1	K.VFGNEIKLEKPK.G	2
*	step02.17901.17901.3	4.9627	0.4188	1993.822	1993.1606	1	2376.1	53.1%	2	K.VTQDELKEVFEDAAEIR.L	3
*	step02.7796.7796.2	2.9673	0.2901	1179.14	1179.2614	1	1484.7	88.9%	1	K.EVFEDAAEIR.L	2
*	step03.14952.14952.2	2.7138	0.2362	941.463	941.10516	2	574.6	85.7%	2	K.GIAYIEFK.T	2
*	step02.12362.12362.2	3.2475	0.3489	1161.486	1161.286	1	671.9	83.3%	2	R.SISLYYTGEK.G	2
*	step02.19119.19119.3	4.6836	0.3927	2502.454	2502.7556	1	1711.6	42.9%	2	K.TLVLSNLSYSATEETLQEVFEK.A	3
*	step02.19112.19112.2	5.8195	0.4747	2502.875	2502.7556	1	1784.2	59.5%	11	K.TLVLSNLSYSATEETLQEVFEK.A	2
*	step04.17197.17197.2	3.6077	0.436	1810.621	1810.9834	1	836.3	70.0%	1	K.SKGYAFIEFASFEDAK.E	2
*	step04.17449.17449.2	3.8907	0.5034	1596.42	1595.7328	1	1436.3	76.9%	1	K.GYAFIEFASFEDAK.E	2
*	step02.14769.14769.3	4.2707	0.4425	2200.453	2201.2876	1	1562.9	47.4%	3	K.GLSEDTTEETLKESFDGSVR.A	3
*	step02.14691.14691.2	4.3349	0.4944	2200.725	2201.2876	1	1207.0	60.5%	2	K.GLSEDTTEETLKESFDGSVR.A	2
*	step02.15962.15962.2	4.8292	0.5196	1562.505	1562.618	1	1533.7	80.8%	2	K.GFGFVDFNSEEDAK.A	2
*	step02.15564.15564.3	4.2113	0.3898	2347.703	2347.5872	1	792.0	36.2%	3	K.EAMEDGEIDGNKVTLDWAKPK.G	3
*	step02.15158.15158.2	4.6154	0.4711	2348.07	2347.5872	1	877.2	60.0%	2	K.EAMEDGEIDGNKVTLDWAKPK.G	2
*	step04.14868.14868.2	3.1247	0.2163	1058.359	1058.2552	1	905.1	87.5%	2	K.VTLDWAKPK.G	2

U	gi\|14043072\|ref\|NP_11	9	20	28.6%	353	37430	8.9	heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Homo sapiens]
U	gi\|4504447\|ref\|NP_002	9	20	29.6%	341	36006	8.6	heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.10677.10678.1	2.0835	0.1557	1088.289	1088.1537	3	289.4	71.4%	1	R.NYYEQWGK.L	1
3	step04.14000.14000.1	1.8094	0.1221	733.649	733.9214	2	519.6	75.0%	1	K.LFVGGIK.E	1 1 1 1 1
2	step05.17153.17153.2	4.5691	0.5462	1881.458	1881.0815	1	1469.7	73.3%	3	K.LFVGGIKEDTEEHHLR.D	2 2 2
	step02.14417.14417.2	2.8156	0.4612	1189.736	1189.3408	1	885.8	88.9%	1	K.IDTIEIITDR.Q	2
	step02.16787.16787.2	4.4403	0.5217	1697.665	1696.7972	1	1426.1	78.6%	2	R.GFGFVTFDDHDPVDK.I	2
	step06.13570.13570.2	2.3697	0.2197	1410.583	1411.5076	1	555.4	72.7%	1	K.YHTINGHNAEVR.K	2
	step05.12212.12212.2	2.7285	0.4172	1377.922	1378.4344	1	606.4	60.7%	1	R.GGGGNFGPGPGSNFR.G	2
	step04.11529.11529.2	5.603	0.6432	2191.517	2191.243	1	1258.6	54.2%	5	R.NMGGPYGGGNYGPGGSGGSGGYGGR.S	2
	step05.10770.10770.2	6.0929	0.5466	2207.601	2207.2424	1	1679.5	60.4%	5	R.NM*GGPYGGGNYGPGGSGGSGGYGGR.S	2

Similarities: gi|58761496|ref|NP_00(2:7)
gi|14043070|ref|NP_11(2:7)
gi|5803036|ref|NP_006(1:8)
gi|34740329|ref|NP_91(1:8)

U	gi\|32483377\|ref\|NP_05	4	7	28.6%	238	25839	7.5	thioredoxin-dependent peroxide reductase, mitochondrial isoform b [Homo sapiens]
U	gi\|5802974\|ref\|NP_006	4	7	26.6%	256	27693	7.8	thioredoxin-dependent peroxide reductase, mitochondrial isoform a precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16938.16938.2	4.7808	0.4758	1464.459	1463.6605	1	2658.4	84.6%	3	R.DYGVLLEGSGLALR.G	2
step03.16917.16917.2	3.3281	0.2373	1286.499	1286.5446	2	892.1	68.2%	1	R.GLFIIDPNGVIK.H	2
step05.14092.14092.2	2.6819	0.2491	1207.539	1207.3644	1	738.1	70.0%	2	K.HLSVNDLPVGR.S	2
step06.17458.17458.3	7.4864	0.5586	3387.45	3387.6934	1	1434.0	30.0%	1	K.AFQYVETHGEVCPANWTPDSPTIKPSPAASK.E	3

U	gi\|15431303\|ref\|NP_00	5	13	28.6%	192	21863	10.0	60S ribosomal protein L9 [Homo sapiens]
U	gi\|67944630\|ref\|NP_00	5	13	28.6%	192	21863	10.0	60S ribosomal protein L9 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16070.16070.2	4.6631	0.5336	2113.744	2114.3826	1	811.2	63.9%	2	K.TILSNQTVDIPENVDITLK.G	2 2
step03.16404.16404.2	4.2027	0.4751	1599.989	1599.8125	1	1804.6	76.9%	6	R.DFNHINVELSLLGK.K	2 2
step05.14054.14054.2	2.8885	0.3654	1331.439	1331.5607	1	848.8	80.0%	2	R.TICSHVQNMIK.G	2 2
step03.14858.14858.2	2.4245	0.2797	1299.166	1299.497	1	1508.9	90.0%	1	R.KFLDGIYVSEK.G	2
step02.14402.14402.2	3.2591	0.4212	1171.383	1171.324	1	919.2	88.9%	2	K.FLDGIYVSEK.G	2

Similarities: gi|310118095|ref|XP_0(3:2)

gi|10800132|ref|NP_06

28.5%

130

14091

10.9

histone H2A type 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.17728.17728.2	2.5978	0.2151	851.422	851.0316	1	739.3	100.0%	4	R.HLQLAIR.N	2 2 2 2 2 2
step02.14096.14096.2	3.7268	0.4017	1273.559	1273.4178	1	650.5	80.0%	2	R.NDEELNKLLGK.V	2 2 2 2
step06.22686.22686.2	5.115	0.5264	1932.785	1932.3394	1	1503.2	75.0%	67	K.VTIAQGGVLPNIQAVLLPK.K	2 2 2 2 2

gi|30795123|ref|NP_69

598

67394

5.7

F-box/WD repeat-containing protein 8 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13132.13132.2	4.0337	0.3807	1555.664	1555.7198	1	1221.5	83.3%	2	R.RWQEELAQAQAPK.K	2 2
	step02.8040.8040.2	2.7985	0.1312	1399.628	1399.5334	1	1849.8	90.9%	1	R.WQEELAQAQAPK.K	2 2
*	step02.15782.15782.2	4.613	0.3242	1542.707	1542.6761	1	1483.8	78.6%	2	R.EGAGGGEQLVDQLIR.D	2
	step02.16472.16472.2	3.09	0.3237	1392.848	1393.5688	1	1896.3	90.0%	1	K.VIAEDEVLWYR.L	2 2
	step03.13384.13386.2	2.384	0.2446	966.341	966.1097	1	494.2	91.7%	1	K.LIFQECR.A	2 2
	step02.18119.18119.3	3.6041	0.2227	3303.948	3304.4985	6	483.0	25.9%	1	R.TWDYVAPFLESEDEEDEPGM*QPNVSFVR.I	3 3
	step02.15926.15926.2	2.8545	0.2273	1460.746	1460.6998	1	1251.9	81.8%	1	K.LVQYLEIVPETR.R	2 2
	step06.20544.20544.2	4.3455	0.523	1852.038	1852.233	1	1945.8	78.1%	1	R.RYPVAVAAAGDLMYLLK.A	2 2
	step06.19685.19685.2	3.6087	0.3463	1867.71	1868.2324	1	463.3	65.6%	1	R.RYPVAVAAAGDLM*YLLK.A	2 2
	step03.19194.19194.2	5.2205	0.5142	1695.621	1696.0468	1	2602.9	83.3%	4	R.YPVAVAAAGDLMYLLK.A	2 2
	step06.18025.18025.2	3.098	0.38	1467.559	1467.6556	1	1205.6	65.4%	2	R.SGNIALSLSAHQLR.V	2 2
	step03.11666.11666.2	2.7922	0.4077	1277.487	1277.3252	1	1025.0	85.0%	2	R.NADLDSFTTHR.R	2 2
	step02.17858.17858.2	3.7202	0.3262	2212.474	2212.483	1	604.6	41.7%	3	R.AYEFAVDQLAFQSPLPVCR.S	2 2
	step03.17233.17233.2	5.1535	0.5558	2548.023	2547.7769	1	1280.9	52.4%	4	R.SSCDAMATHYYDLALAFPYNHV.-	2 2
	step04.17158.17160.2	4.211	0.4573	2562.75	2563.7764	1	877.5	47.6%	3	R.SSCDAM*ATHYYDLALAFPYNHV.-	2 2

Similarities: gi|30795121|ref|NP_03(14:1)

gi|47132620|ref|NP_00

639

65433

8.0

keratin, type II cytoskeletal 2 epidermal [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.10382.10382.2	4.154	0.3914	1256.297	1255.3195	1	1453.8	73.1%	2	R.GFSSGSAVVSGGSR.R	2 2
	step05.16068.16068.2	2.5453	0.2857	1840.315	1839.9895	1	577.9	42.9%	1	K.SISISVAGGGGGFGAAGGFGGR.G	2 2
*	step05.15266.15266.2	6.4749	0.6199	2400.674	2400.424	1	2798.8	55.2%	3	R.GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR.F	2
	step03.12042.12042.2	4.6013	0.1195	1477.65	1476.6593	1	1995.4	90.9%	7	R.FLEQQNQVLQTK.W	2 2 2
	step02.8726.8726.2	3.35	0.406	1038.269	1038.1361	1	831.4	93.8%	2	R.YLDGLTAER.T	2 2
	step02.15359.15359.2	4.069	0.5157	2256.704	2257.421	1	931.4	55.6%	2	R.TSQNSELNNMQDLVEDYKK.K	2 2
	step02.15360.15360.3	3.6971	0.3375	2257.241	2257.421	6	512.3	34.7%	1	R.TSQNSELNNMQDLVEDYKK.K	3 3
	step03.12480.12480.2	3.435	0.2047	1337.405	1337.5035	4	714.6	68.2%	2	R.TAAENDFVTLKK.D	2 2
	step02.18021.18021.2	3.8129	0.2799	1461.563	1461.6846	1	1547.8	86.4%	2	K.VDLLNQEIEFLK.V	2 2
	step02.18066.18066.1	2.2392	0.09	1329.837	1330.5093	1	555.3	72.7%	1	R.NLDLDSIIAEVK.A	1 1 1 1 1 1 1 1
	step02.8338.8338.1	2.1387	0.2167	973.708	974.0935	1	314.1	78.6%	2	K.IEISELNR.V	1 1 1
	step02.8330.8330.2	3.0095	0.1861	974.406	974.0935	1	681.6	92.9%	2	K.IEISELNR.V	2 2 2
	step02.7820.7820.2	3.1355	0.253	1330.566	1330.3864	1	1521.1	81.8%	1	K.NVQDAIADAEQR.G	2 2
	step03.15588.15588.2	5.1831	0.3669	1615.605	1614.7823	1	1871.4	84.6%	3	R.NKLNDLEEALQQAK.E	2 2
	step03.17439.17439.2	3.0941	0.3372	2200.362	2199.4075	1	302.4	44.4%	1	R.NKLNDLEEALQQAKEDLAR.L	2 2
	step02.14264.14264.2	3.9759	0.3495	1372.51	1372.5063	1	2016.8	81.8%	2	K.LNDLEEALQQAK.E	2 2

gi|7661730|ref|NP_054

187

20843

9.1

28S ribosomal protein S28, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13105.13105.2	3.2083	0.3675	979.089	979.0719	1	902.9	77.8%	2	R.AGGFASALER.H	2
*	step03.14017.14017.2	3.6198	0.4667	1170.573	1170.3212	1	1345.8	88.9%	2	K.NVESFASM*LR.H	2
*	step02.15279.15279.2	3.4195	0.3255	1060.422	1060.2263	1	997.9	93.8%	2	R.LLDLELTSR.F	2
*	step02.18731.18731.2	4.1538	0.5198	2493.339	2492.8071	1	1443.5	52.2%	1	R.FLGATTDTTVLEANAVLLGIQESK.D	2

gi|4506687|ref|NP_001

145

17040

10.4

40S ribosomal protein S15 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.248.248.2	5.9651	0.5065	2589.329	2589.9268	1	2343.6	57.1%	6	R.GVDLDQLLDMSYEQLMQLYSAR.Q	2
*	step03.249.249.3	6.4837	0.5854	2591.068	2589.9268	1	1415.0	41.7%	3	R.GVDLDQLLDMSYEQLMQLYSAR.Q	3
*	step02.20384.20384.2	6.2791	0.4762	2605.845	2605.926	1	2276.8	57.1%	2	R.GVDLDQLLDMSYEQLM*QLYSAR.Q	2
*	step02.20386.20386.3	5.2481	0.3598	2605.971	2605.926	1	2292.9	45.2%	2	R.GVDLDQLLDMSYEQLM*QLYSAR.Q	3
*	step03.272.272.3	4.9463	0.1008	2606.606	2605.926	2	981.6	34.5%	2	R.GVDLDQLLDM*SYEQLMQLYSAR.Q	3
*	step03.20523.20523.2	6.1988	0.4544	2606.831	2605.926	1	2440.6	57.1%	2	R.GVDLDQLLDM*SYEQLMQLYSAR.Q	2
*	step02.19952.19952.2	5.2512	0.5655	2621.124	2621.9255	1	1754.0	54.8%	5	R.GVDLDQLLDMSYEQLMQLYSAR.Q	2
*	step02.19944.19944.3	4.5312	0.4292	2621.362	2621.9255	1	1525.0	36.9%	1	R.GVDLDQLLDMSYEQLMQLYSAR.Q	3
*	step02.19226.19226.2	6.17	0.6674	2054.698	2054.484	1	2117.2	75.0%	2	R.DMIILPEMVGSMVGVYNGK.T	2
*	step02.15634.15634.2	4.3108	0.3682	2087.701	2086.4827	1	1573.6	69.4%	3	R.DMIILPEMVGSMVGVYNGK.T	2
*	step02.13552.13552.2	4.3764	0.5207	2101.699	2102.482	1	1658.6	80.6%	3	R.DMIILPEMVGSM*VGVYNGK.T	2

U	gi\|120407068\|ref\|NP_0	12	21	28.2%	393	43653	6.8	cellular tumor antigen p53 isoform a [Homo sapiens]
U	gi\|187830777\|ref\|NP_0	12	21	28.2%	393	43653	6.8	cellular tumor antigen p53 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.11874.11875.2	2.8633	0.3049	1079.749	1079.1467	1	480.9	81.2%	2	K.TYQGSYGFR.L	2 2
step06.18054.18054.2	3.4044	0.4361	1032.326	1031.19	1	1498.1	94.4%	2	R.LGFLHSGTAK.S	2 2
step03.10759.10759.2	3.4319	0.4885	1341.487	1341.4857	1	1040.8	77.3%	2	K.SVTCTYSPALNK.M	2 2
step04.12764.12764.2	2.9079	0.2879	898.227	898.09875	1	730.5	100.0%	2	K.MFCQLAK.T	2 2 2 2
step04.15536.15536.2	3.3185	0.3019	1911.868	1912.129	1	851.9	65.6%	1	K.TCPVQLWVDSTPPPGTR.V	2 2 2 2
step03.11002.11002.1	1.8058	0.1391	696.796	696.8814	1	533.3	80.0%	1	R.AMAIYK.Q	1 1 1 1
step03.12678.12678.2	4.078	0.3765	1666.658	1666.8108	1	481.5	64.3%	3	R.CSDSDGLAPPQHLIR.V	2 2 2 2
step06.20017.20017.2	3.6769	0.523	1708.929	1708.982	1	1368.9	88.5%	3	K.KKPLDGEYFTLQIR.G	2 2
step02.8439.8439.1	1.9567	0.103	1058.743	1059.1952	16	247.7	68.8%	1	R.ELNEALELK.D	1 1
step02.8388.8388.2	3.8309	0.3893	1629.552	1629.7937	1	853.1	78.6%	1	R.ELNEALELKDAQAGK.E	2 2
step03.7935.7935.2	5.8299	0.5464	2213.87	2213.391	1	1290.0	67.5%	2	R.ELNEALELKDAQAGKEPGGSR.A	2 2
step03.7932.7932.3	4.9493	0.4865	2214.013	2213.391	1	1961.1	45.0%	1	R.ELNEALELKDAQAGKEPGGSR.A	3 3

Similarities: gi|187830894|ref|NP_0(9:3)
gi|187830823|ref|NP_0(7:5)
gi|187830901|ref|NP_0(4:8)

gi|221136939|ref|NP_0

28.1%

499

55456

5.8

U4/U6 small nuclear ribonucleoprotein Prp31 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12174.12174.2	2.2291	0.3111	1033.979	1033.3113	1	496.0	78.6%	1	K.MFAEIMMK.I	2
*	step04.18442.18442.2	5.8821	0.3703	2392.041	2391.706	1	1190.2	55.0%	5	R.VIVDANNLTVEIENELNIIHK.F	2
*	step04.18522.18522.2	5.2726	0.3645	2034.434	2033.3159	1	1348.2	75.0%	7	K.RFPELESLVPNALDYIR.T	2
*	step02.19260.19260.2	3.8295	0.2939	1876.774	1877.1296	1	685.3	66.7%	4	R.FPELESLVPNALDYIR.T	2
*	step05.14756.14756.2	3.9118	0.4626	1261.414	1261.5168	1	1395.5	87.5%	2	K.IMGVAGGLTNLSK.M	2
*	step05.13290.13290.2	3.7262	0.3952	1277.468	1277.5162	1	1510.2	87.5%	2	K.IM*GVAGGLTNLSK.M	2
*	step06.18510.18510.2	4.0689	0.3841	1475.505	1475.7996	1	2397.2	91.7%	2	K.MPACNIMLLGAQR.K	2
*	step06.17525.17525.2	4.4833	0.4335	1490.733	1491.7991	1	1229.0	87.5%	4	K.MPACNIM*LLGAQR.K	2
*	step02.12360.12360.2	3.0724	0.3346	1351.746	1351.487	1	668.7	65.0%	4	K.VGYELKDEIER.K	2
*	step03.13390.13390.2	2.2724	0.1035	801.859	801.9541	1	984.6	91.7%	2	R.LGLTEIR.K	2
*	step02.18122.18122.3	5.5419	0.5748	2688.838	2689.8918	1	1748.8	42.4%	2	R.M*SFGEIEEDAYQEDLGFSLGHLGK.S	3
*	step02.18118.18118.2	5.0081	0.431	2689.74	2689.8918	1	906.7	52.2%	2	R.M*SFGEIEEDAYQEDLGFSLGHLGK.S	2
*	step03.16582.16584.2	5.2396	0.5332	2603.386	2603.8665	1	894.5	46.0%	1	R.SSGTASSVAFTPLQGLEIVNPQAAEK.K	2

gi|5453930|ref|NP_006

28.0%

125

14523

5.1

DNA-directed RNA polymerase II subunit RPB9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10435.10435.2	3.9911	0.4237	1620.533	1620.7957	1	1055.8	81.8%	1	R.FCQECNNM*LYPK.E	2
*	step02.19078.19078.3	3.5698	0.1382	2591.164	2591.8557	1	859.8	36.4%	1	K.ITHEVDELTQIIADVSQDPTLPR.T	3

U	gi\|14165469\|ref\|NP_00	5	9	27.7%	130	14839	10.1	40S ribosomal protein S15a [Homo sapiens]
U	gi\|71772415\|ref\|NP_00	5	9	27.7%	130	14839	10.1	40S ribosomal protein S15a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.14825.14825.1	1.8057	0.0842	975.655	975.18805	1	638.2	75.0%	1	R.MNVLADALK.S	1
step04.13434.13434.2	2.7416	0.2974	872.224	872.0476	1	678.6	92.9%	2	K.IVVNLTGR.L	2
step03.14506.14506.2	2.9941	0.1879	1235.563	1235.4113	1	1005.7	88.9%	2	R.FDVQLKDLEK.W	2
step05.14034.14034.1	1.9261	0.1922	1127.291	1128.2656	4	181.9	68.8%	1	K.WQNNLLPSR.Q	1
step04.14170.14170.2	2.9056	0.1549	1128.647	1128.2656	1	777.0	87.5%	3	K.WQNNLLPSR.Q	2

gi|5902102|ref|NP_008

27.7%

119

13282

11.6

small nuclear ribonucleoprotein Sm D1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.15381.15381.3	4.0394	0.38	1555.624	1555.7612	1	1425.6	54.2%	1	K.NREPVQLETLSIR.G	3 3
	step04.15336.15336.2	4.0179	0.37	1555.701	1555.7612	1	578.2	79.2%	2	K.NREPVQLETLSIR.G	2 2
*	step03.69.69.2	5.3857	0.5382	2289.803	2288.664	1	1167.3	68.4%	4	R.YFILPDSLPLDTLLVDVEPK.V	2
*	step03.93.93.3	4.914	0.3706	2289.92	2288.664	1	1283.7	39.5%	2	R.YFILPDSLPLDTLLVDVEPK.V	3

Similarities: gi|169160654|ref|XP_0(2:2)

gi|124256496|ref|NP_0

27.6%

641

70375

6.0

heat shock 70 kDa protein 1-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step02.6416.6416.2	3.5419	0.3117	1229.049	1229.3252	1	1603.5	90.0%	2	K.VEIIANDQGNR.T	2 2 2 2 2 2 2
	step02.11734.11734.1	2.6963	0.3675	1488.639	1488.5806	1	149.2	54.2%	1	R.TTPSYVAFTDTER.L	1 1 1 1 1 1
	step02.11726.11726.2	3.224	0.5674	1489.092	1488.5806	1	772.6	79.2%	3	R.TTPSYVAFTDTER.L	2 2 2 2 2 2
*	step02.10438.10438.2	2.8685	0.3653	1694.79	1693.863	1	434.8	57.1%	1	K.NQVAM*NPQNTVFDAK.R	2
	step02.15458.15459.2	4.2377	0.5252	1631.728	1631.8715	1	1440.7	84.6%	4	K.AFYPEEISSM*VLTK.L	2 2
	step02.15510.15510.3	4.321	0.4058	1632.195	1631.8715	1	1671.4	55.8%	2	K.AFYPEEISSM*VLTK.L	3 3
	step02.15854.15854.2	4.6244	0.3306	1198.56	1198.3973	1	1960.4	95.5%	2	K.DAGVIAGLNVLR.I	2 2
	step02.15891.15891.1	2.3867	0.2709	1198.698	1198.3973	1	305.6	63.6%	1	K.DAGVIAGLNVLR.I	1 1
	step02.15549.15549.3	4.1068	0.3652	1661.199	1660.8926	1	1644.0	50.0%	2	R.IINEPTAAAIAYGLDK.G	3 3 3 3 3
	step02.15512.15512.2	5.4778	0.5193	1661.592	1660.8926	1	1852.4	86.7%	2	R.IINEPTAAAIAYGLDK.G	2 2 2 2 2
	step02.7404.7404.2	3.2654	0.3679	1676.675	1676.6827	1	1029.0	70.0%	2	K.ATAGDTHLGGEDFDNR.L	2 2 2
*2	step05.14866.14866.2	4.3716	0.3515	1466.623	1466.7108	1	1938.9	80.8%	19	K.AKIHDIVLVGGSTR.I	2 2
*2	step05.14922.14922.1	4.2953	0.3604	1466.995	1466.7108	1	727.0	73.1%	2	K.AKIHDIVLVGGSTR.I	1 1
	step02.18734.18734.3	6.5065	0.5281	2305.964	2305.5935	1	3186.8	48.9%	2	K.SINPDEAVAYGAAVQAAILMGDK.S	3 3
	step02.18752.18752.2	6.8081	0.5657	2306.485	2305.5935	1	2309.0	63.6%	1	K.SINPDEAVAYGAAVQAAILMGDK.S	2 2
	step02.18038.18038.2	6.2875	0.5844	2321.675	2321.593	1	2350.9	61.4%	3	K.SINPDEAVAYGAAVQAAILM*GDK.S	2 2
	step02.18039.18039.3	5.0617	0.5684	2322.185	2321.593	1	1772.8	43.2%	2	K.SINPDEAVAYGAAVQAAILM*GDK.S	3 3
	step02.17014.17014.2	4.5983	0.547	2787.973	2788.0183	1	1056.0	54.3%	1	K.QTQIFTTYSDNQPGVLIQVYEGER.A	2 2
	step03.6597.6598.2	2.5644	0.2397	1003.378	1004.1196	1	770.6	92.9%	2	R.LSKEEIER.M	2 2
	step02.14757.14757.1	3.1738	0.4752	1288.677	1288.4545	1	298.4	65.0%	3	K.NALESYAFNMK.S	1 1
	step02.13870.13870.2	3.8052	0.3564	1289.216	1288.4545	1	1456.1	85.0%	4	K.NALESYAFNMK.S	2 2
	step02.12272.12272.2	3.7586	0.4698	1305.47	1304.4539	1	1636.1	85.0%	1	K.NALESYAFNM*K.S	2 2

Similarities: gi|167466173|ref|NP_0(19:3)
gi|24234686|ref|NP_69(5:17)
gi|5729877|ref|NP_006(5:17)
gi|16507237|ref|NP_00(3:19)
gi|34419635|ref|NP_00(4:18)
gi|13676857|ref|NP_06(5:17)

gi|4758504|ref|NP_004

27.6%

261

26923

7.8

3-hydroxyacyl-CoA dehydrogenase type-2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15947.15947.2	2.7148	0.204	1184.765	1185.4652	3	820.7	72.7%	1	K.GGIVGMTLPIAR.D	2 2
*	step06.20009.20009.2	5.1333	0.5797	2102.809	2102.523	1	1153.3	68.4%	2	R.VM*TIAPGLFGTPLLTSLPEK.V	2
	step05.15594.15594.2	2.4471	0.1852	1622.634	1622.8428	1	1164.1	73.1%	1	K.VCNFLASQVPFPSR.L	2 2
	step03.20468.20468.3	5.3402	0.4483	2879.757	2880.2468	1	1883.0	36.0%	1	R.LGDPAEYAHLVQAIIENPFLNGEVIR.L	3 3

Similarities: gi|83715985|ref|NP_00(3:1)

gi|14589951|ref|NP_00

27.6%

210

24611

6.0

DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18136.18136.2	5.081	0.4783	2028.939	2029.1897	1	3023.8	78.1%	2	R.GYLVTQDELDQTLEEFK.A	2
*	step03.16672.16672.3	4.4804	0.2969	3179.102	3179.5051	1	692.4	26.9%	1	R.RTDLTVLVAHNDDPTDQM*FVFFPEEPK.V	3
*	step04.14036.14036.2	2.8488	0.2863	1443.489	1443.7374	1	1318.6	76.9%	2	R.ALIVVQQGMTPSAK.Q	2
*	step04.12882.12882.2	3.8897	0.5378	1459.345	1459.7368	1	1721.4	80.8%	4	R.ALIVVQQGM*TPSAK.Q	2

gi|12056971|ref|NP_07

102

27.5%

1944

216498

6.3

anaphase-promoting complex subunit 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.18876.18876.3	4.7698	0.4618	2569.324	2569.8435	1	2111.5	45.2%	2	K.AFTVDSPVQQALWCDFIISQDK.S	3 3
	step02.18880.18880.2	6.0774	0.5503	2571.139	2569.8435	1	1649.4	57.1%	3	K.AFTVDSPVQQALWCDFIISQDK.S	2 2
	step02.18420.18420.2	2.4763	0.3215	1948.932	1950.2255	1	773.0	59.4%	1	K.DYIASLPFQVANVWPTK.Y	2 2
*	step05.19509.19509.2	2.7781	0.3978	2569.133	2570.0583	1	405.1	45.2%	1	R.EPLPTMFSMLHPLDEITPLVCK.S	2
*	step05.18375.18376.2	3.0969	0.1238	2585.893	2586.0576	1	297.9	42.9%	2	R.EPLPTMFSM*LHPLDEITPLVCK.S	2
*	step05.18096.18096.2	2.7402	0.1454	2586.132	2586.0576	1	381.4	42.9%	1	R.EPLPTM*FSMLHPLDEITPLVCK.S	2
	step06.20094.20094.3	3.9419	0.4067	3135.517	3136.5698	31	545.6	26.9%	2	K.IVFLNTDPSIVM*TYDAVQNVHSVWTLR.R	3 3 3
*	step05.13917.13917.2	4.2183	0.5395	2288.725	2289.4478	1	897.6	54.8%	2	K.FSEQGGTPQNVATSSSLTAHLR.S	2
*	step06.17916.17916.3	5.9119	0.4776	2610.803	2610.7776	1	2831.0	45.7%	2	R.SLSKGDSPVTSPFQNYSSIHSQSR.S	3
*	step04.14486.14486.2	4.4559	0.5416	2194.726	2195.2913	1	1053.2	65.8%	4	K.GDSPVTSPFQNYSSIHSQSR.S	2
	step04.13710.13710.1	2.2597	0.1677	1233.63	1234.4083	2	135.0	50.0%	2	R.SPSISNMAALSR.A	1 1 1
	step04.13812.13812.2	3.853	0.4219	1234.387	1234.4083	1	1628.7	86.4%	2	R.SPSISNMAALSR.A	2 2 2
	step04.10680.10680.2	3.4193	0.3339	1250.385	1250.4077	1	1390.4	81.8%	4	R.SPSISNM*AALSR.A	2 2 2
*	step04.15684.15684.2	3.6329	0.2734	1489.453	1489.7412	1	1264.8	73.1%	1	K.TQLIFGSVTNIPAK.D	2
*	step06.16697.16697.2	3.0793	0.2924	1624.997	1624.8602	1	555.4	56.7%	2	R.PSTPLDGVSTPKPLSK.L	2
*	step03.18516.18516.2	4.2159	0.2493	1949.923	1950.3083	1	959.3	64.7%	3	K.LLGSLDEVVLLSPVPELR.D	2
*	step03.18544.18544.3	4.1759	0.2186	1951.173	1950.3083	1	1182.7	47.1%	2	K.LLGSLDEVVLLSPVPELR.D	3
*	step02.19124.19124.2	4.5751	0.3343	2029.863	2030.2882	1	1511.2	64.7%	2	K.LLGS#LDEVVLLSPVPELR.D	2
*	step04.18304.18304.2	3.4044	0.481	2229.251	2229.5933	1	722.3	44.7%	1	R.ITIPEIATSELVQTCLQAIK.F	2
	step03.14919.14919.2	3.1504	0.3418	1852.516	1853.0818	1	709.1	56.7%	1	K.GEGM*PPYPYLPGICER.S	2 2
	step02.19150.19150.2	3.919	0.4504	1555.867	1555.8428	1	1301.1	84.6%	2	R.DLETLPFGIALPIR.D	2 2 2
	step02.18833.18833.3	3.6886	0.3777	1942.86	1942.1552	3	662.6	37.5%	2	R.EQPASDWPEAVCLLIGR.Q	3 3
	step02.15371.15371.2	4.4606	0.5313	2175.658	2176.3677	1	1135.3	70.6%	2	R.VNVVQYPELSDHEFIEEK.E	2 2 2 2
	step05.13154.13154.2	2.3385	0.1709	931.583	931.10846	5	399.4	75.0%	1	R.LLQLCQR.T	2 2
	step04.16596.16596.3	4.5201	0.3599	3329.045	3329.6455	1	498.7	27.4%	2	R.NTTVDLNSGNIDVPPNMTSWASFHNGVAAGLK.I	3 3 3
	step05.15680.15680.2	3.7742	0.4942	1402.586	1402.6204	1	855.6	81.8%	3	K.LATLNIHDYLTK.G	2 2
	step06.19237.19237.2	3.0788	0.3103	1701.815	1700.9817	1	477.9	53.1%	3	K.GHEM*TSIGLLLGVSAAK.L	2 2 2
	step05.20846.20846.2	5.6812	0.463	2282.129	2282.7295	1	2101.2	69.4%	2	R.APDTMYLLDFVKPEFLLLR.T	2 2
	step05.20859.20859.3	4.8266	0.573	2283.454	2282.7295	1	2833.2	52.8%	3	R.APDTMYLLDFVKPEFLLLR.T	3 3
	step05.20158.20158.3	5.0147	0.4374	2298.188	2298.7288	1	1183.8	44.4%	4	R.APDTM*YLLDFVKPEFLLLR.T	3 3
	step06.21004.21004.2	4.5396	0.5447	2298.942	2298.7288	1	503.7	55.6%	4	R.APDTM*YLLDFVKPEFLLLR.T	2 2
	step02.18717.18717.2	3.5067	0.2752	1588.508	1587.8351	1	1126.3	79.2%	1	R.CLILWDDILPNSK.W	2 2
	step03.14652.14652.2	2.4606	0.353	1327.96	1327.5135	1	978.7	80.0%	1	K.WVDSNVPQIIR.E	2 2
*	step05.14924.14924.2	3.4568	0.3658	1696.195	1695.8506	1	383.2	57.1%	2	R.FAGSENLSAFNCLHK.F	2
	step05.15017.15017.2	3.4925	0.5121	1169.384	1169.3577	1	933.4	83.3%	3	R.HLYVLAAEPR.L	2 2
	step02.18404.18404.2	5.6087	0.4581	2525.017	2524.8843	1	885.9	54.8%	2	R.LLVPVDVDTNTPCYALLEVTYK.G	2 2
	step05.19012.19012.3	4.0369	0.3213	2969.126	2970.4316	1	904.5	31.2%	1	K.GTQWYEQTKEELMAPTLLPELHLLK.Q	3 3
	step06.20195.20195.3	5.773	0.4669	2985.874	2986.4312	1	1041.9	32.3%	4	K.GTQWYEQTKEELM*APTLLPELHLLK.Q	3 3
	step04.17430.17430.2	5.2183	0.5628	2664.175	2664.9783	1	872.9	56.5%	2	R.AGQLSYKEDPMGWQSLLAQTVANR.N	2 2
	step04.17418.17418.3	4.4694	0.4307	2664.795	2664.9783	1	1265.9	33.7%	2	R.AGQLSYKEDPMGWQSLLAQTVANR.N	3 3
	step04.16879.16879.2	3.8647	0.5262	2681.033	2680.9775	1	686.7	52.2%	2	R.AGQLSYKEDPM*GWQSLLAQTVANR.N	2 2
	step04.16872.16872.3	5.6412	0.4742	2681.586	2680.9775	1	2075.4	40.2%	2	R.AGQLSYKEDPM*GWQSLLAQTVANR.N	3 3
	step02.15308.15308.2	3.242	0.3061	1481.603	1481.6531	1	1052.4	63.6%	2	R.EMSETSELWQIK.L	2 2 2
	step04.17280.17280.2	3.171	0.274	1097.787	1098.2762	1	1162.8	93.8%	4	K.LVLEFFSSR.S	2 2 2
	step04.17683.17684.2	4.0639	0.4682	1481.744	1481.7842	1	1314.1	83.3%	2	R.GLFMNSEFLPVVK.C	2 2 2
	step04.16990.16990.2	3.2958	0.3873	1497.442	1497.7836	1	1382.7	83.3%	2	R.GLFM*NSEFLPVVK.C	2 2 2
	step02.746.746.2	3.3721	0.4075	1528.036	1526.8898	1	1018.6	69.2%	2	R.LAPLLLGNPQPMVM.-	2 2

Similarities: gi|310118953|ref|XP_0(5:42)
gi|169217473|ref|XP_0(4:43)
gi|310118949|ref|XP_0(32:15)
gi|310114173|ref|XP_0(4:43)
gi|169164061|ref|XP_0(2:45)

gi|5803225|ref|NP_006

27.5%

255

29174

4.7

14-3-3 protein epsilon [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18315.18315.2	3.6967	0.4198	1477.714	1477.7124	1	1092.8	86.4%	2	K.LICCDILDVLDK.H	2
*	step04.18526.18526.3	5.2648	0.4377	2697.335	2697.065	1	1793.4	40.2%	1	K.LICCDILDVLDKHLIPAANTGESK.V	3
*	step04.14754.14754.2	2.9948	0.2789	1820.186	1821.0911	1	358.4	50.0%	2	K.AASDIAMTELPPTHPIR.L	2
*	step04.1722.1722.3	5.139	0.5344	3260.822	3260.6147	1	1506.2	33.0%	2	K.AAFDDAIAELDTLSEESYKDSTLIMQLLR.D	3

gi|5032179|ref|NP_005

27.4%

835

88550

5.8

transcription intermediary factor 1-beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15801.15801.3	4.958	0.5361	3445.426	3444.6533	1	1024.7	25.7%	3	R.STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR.E	3
*	step02.15674.15674.2	3.1649	0.3953	1186.885	1187.3502	1	1006.6	87.5%	2	K.DIVENYFMR.D	2
*	step02.13437.13437.2	2.384	0.2979	1203.378	1203.3496	1	1201.9	87.5%	1	K.DIVENYFM*R.D	2
*	step03.15877.15877.2	4.9036	0.682	2137.813	2138.3445	1	2152.1	84.4%	2	K.HEPLVLFCESCDTLTCR.D	2
*	step04.16450.16450.3	6.814	0.5756	2488.437	2488.651	1	2397.1	48.7%	4	R.DCQLNAHKDHQYQFLEDAVR.N	3
*	step02.14726.14726.2	4.6249	0.5134	1521.466	1521.6156	1	1105.1	86.4%	2	K.DHQYQFLEDAVR.N	2
*	step06.18229.18229.1	1.8165	0.3273	871.728	872.1306	1	363.7	64.3%	1	R.KLLASLVK.R	1
*	step06.18209.18209.2	2.3855	0.1108	872.395	872.1306	1	814.2	92.9%	1	R.KLLASLVK.R	2
*	step04.16491.16491.1	2.0625	0.3448	947.594	948.2724	1	606.5	71.4%	2	K.MAILQIMK.E	1
*	step04.16494.16494.2	3.1054	0.2821	948.07	948.2724	2	912.7	92.9%	4	K.MAILQIMK.E	2
*	step04.15078.15078.2	2.3927	0.1941	964.433	964.2718	1	1214.6	100.0%	2	K.M*AILQIMK.E	2
*	step04.13012.13012.2	2.9908	0.3239	980.41	980.2712	1	1119.7	100.0%	2	K.MAILQIMK.E	2
*	step02.17270.17270.2	4.9866	0.4885	1980.814	1981.1947	1	2633.3	76.5%	2	R.FASWALESDNNTALLLSK.K	2
*	step06.19277.19277.2	2.7395	0.3618	1090.066	1090.3022	1	899.3	92.9%	2	K.LIYFQLHR.A	2
*	step03.11726.11726.2	3.1771	0.2226	1483.978	1482.7509	1	778.1	79.2%	2	K.MIVDPVEPHGEMK.F	2
*	step03.16707.16707.2	3.4749	0.3139	1310.544	1309.4536	1	709.6	88.9%	5	K.FQWDLNAWTK.S	2
*	step06.14752.14753.2	3.8163	0.4063	2020.811	2020.3024	1	784.5	57.9%	4	K.IVAERPGTNSTGPAPMAPPR.A	2
*	step06.14500.14500.3	4.0897	0.3078	2021.685	2020.3024	1	1243.3	47.4%	2	K.IVAERPGTNSTGPAPMAPPR.A	3
*	step06.13698.13698.2	2.5488	0.5097	2036.413	2036.3018	1	310.0	52.6%	1	K.IVAERPGTNSTGPAPM*APPR.A	2
*	step02.7809.7809.2	2.9155	0.2455	1121.916	1122.2349	1	1017.4	80.0%	2	R.SGEGEVSGLMR.K	2
*	step02.16545.16545.2	4.3996	0.4627	1954.625	1954.1692	1	844.9	75.0%	2	K.VFPGSTTEDYNLIVIER.G	2
*	step02.13506.13506.2	2.9444	0.4715	1879.738	1879.0193	1	352.0	65.6%	3	K.LSPPYSSPQEFAQDVGR.M	2
*	step03.14629.14629.2	3.5237	0.3421	1786.389	1787.008	1	1062.6	76.7%	2	K.LTEDKADVQSIIGLQR.F	2
*	step02.13604.13604.2	3.8367	0.214	1200.554	1200.3701	1	1312.2	80.0%	2	K.ADVQSIIGLQR.F	2

gi|4503515|ref|NP_003

27.3%

352

39930

6.5

eukaryotic translation initiation factor 3 subunit H [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10575.10575.2	2.3885	0.3433	905.364	905.0312	1	804.9	87.5%	1	K.TAQGSLSLK.A	2
*	step03.18708.18708.2	4.7935	0.4616	2045.598	2044.3989	1	1081.7	65.6%	5	K.ANITFEYMFEEVPIVIK.N	2
*	step05.17348.17348.2	3.1355	0.2221	2060.708	2060.3984	2	359.1	43.8%	1	K.ANITFEYM*FEEVPIVIK.N	2
*	step05.19070.19070.2	4.8104	0.3989	1726.498	1727.0209	1	1515.2	84.6%	2	K.NSHLINVLMWELEK.K	2
*	step06.19978.19978.2	3.0293	0.2323	2078.8	2078.3152	12	175.6	36.8%	2	K.SAVADKHELLSLASSNHLGK.N	2
*	step03.13584.13584.2	2.6197	0.2623	1019.295	1019.2009	1	908.5	92.9%	1	K.NLQLLM*DR.V	2
*	step03.18349.18349.2	5.5156	0.5749	2148.167	2148.4905	1	2781.8	79.4%	2	K.NLQLLMDRVDEMSQDIVK.Y	2
*	step03.18360.18360.3	4.4205	0.2397	2148.855	2148.4905	1	2516.5	50.0%	1	K.NLQLLMDRVDEMSQDIVK.Y	3
*	step03.16596.16596.2	3.8771	0.3284	2164.684	2164.49	1	240.3	44.1%	1	K.NLQLLMDRVDEM*SQDIVK.Y	2
*	step02.15296.15296.2	6.5276	0.5855	2099.893	2099.388	1	2406.4	79.4%	2	R.M*DSLLIAGQINTYCQNIK.E	2

gi|14141193|ref|NP_00

27.3%

194

22591

10.7

40S ribosomal protein S9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13711.13711.2	3.1366	0.3534	921.424	921.07544	1	484.9	92.9%	2	K.LIGEYGLR.N	2
*	step06.18689.18689.2	3.6474	0.3335	1189.547	1189.3922	1	956.3	88.9%	4	R.RLFEGNALLR.R	2
*	step05.17066.17066.2	3.0449	0.2906	1194.568	1194.5121	1	1208.4	88.9%	4	K.MKLDYILGLK.I	2
*	step05.15992.15992.2	3.1161	0.4047	1210.577	1210.5115	1	1443.2	88.9%	2	K.M*KLDYILGLK.I	2
*	step02.16172.16172.2	3.0071	0.3962	935.323	935.142	1	677.3	92.9%	2	K.LDYILGLK.I	2
*	step02.8642.8642.1	1.9026	0.2817	921.598	922.0171	9	299.1	75.0%	1	K.IEDFLER.R	1
*	step02.8582.8582.2	2.6122	0.2301	922.178	922.0171	1	463.5	91.7%	2	K.IEDFLER.R	2
*	step05.16424.16424.2	2.5824	0.3311	1272.707	1272.5211	1	415.6	75.0%	2	K.QVVNIPSFIVR.L	2
*	step05.14699.14699.1	1.9579	0.3138	887.589	888.00555	1	365.4	83.3%	1	K.HIDFSLR.S	1
*	step05.14651.14651.2	2.5013	0.1891	888.518	888.00555	1	649.1	100.0%	2	K.HIDFSLR.S	2

gi|151101459|ref|NP_0

27.2%

881

96724

4.6

serine/threonine-protein phosphatase 6 regulatory subunit 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16426.16426.2	4.0826	0.4397	1784.791	1784.9507	1	1081.0	71.4%	2	K.FDLHTSSHLDTLLER.E	2
*	step02.17949.17950.2	5.2032	0.5968	2274.941	2275.4429	1	948.2	66.7%	2	R.EDLSLPELLDEEDVLQECK.V	2
*	step06.21240.21240.3	3.8874	0.2461	3317.98	3318.7473	1	830.2	35.7%	1	K.LLDFLLQPPHLQAMVAWVTQEPPDSGEER.L	3
*	step03.17690.17690.3	6.5236	0.4399	3454.873	3453.7915	1	2149.8	39.2%	2	R.YKYPSVACEILTSDVPQINDALGADESLLNR.L	3
*	step06.21320.21320.2	5.4796	0.6688	2291.378	2291.63	1	2009.5	65.0%	2	R.LYGFLQSTGSLNPLLASFFSK.V	2
*	step05.15707.15707.2	2.4866	0.2645	1207.618	1207.4043	1	578.6	77.8%	1	R.KTDQLVSFLR.K	2
*	step02.16248.16248.2	2.5889	0.1695	1078.752	1079.2313	1	745.5	75.0%	1	K.TDQLVSFLR.K	2
*	step02.17040.17040.3	4.4465	0.3477	2430.382	2429.6865	1	1221.3	40.0%	2	R.EQM*IQVQDSPEPDQLLATLEK.Q	3
*	step04.13328.13328.2	5.0064	0.5025	1995.805	1996.2141	1	844.2	58.3%	2	R.VAGALVQNTEKGPNAEQLR.Q	2
*	step04.13286.13286.3	3.8038	0.4093	1997.219	1996.2141	1	1820.7	45.8%	1	R.VAGALVQNTEKGPNAEQLR.Q	3
*	step02.19695.19695.2	2.9285	0.3313	2623.484	2622.917	1	338.7	37.5%	1	K.EFNFPEEAVLQQAFMDFQM*QR.M	2
*	step02.19551.19551.3	5.447	0.4843	2639.498	2638.9163	1	1334.9	46.2%	2	K.EFNFPEEAVLQQAFMDFQMQR.M	3
*	step02.17984.17984.3	6.0688	0.488	3339.72	3339.503	1	1037.5	31.2%	2	R.MTSAFIDHFGFNDEEFGEQEESVNAPFDK.T	3
*	step02.17645.17645.3	5.9746	0.5031	3355.428	3355.5022	1	1862.2	39.3%	2	R.M*TSAFIDHFGFNDEEFGEQEESVNAPFDK.T	3
*	step05.17655.17655.2	4.1657	0.5418	2668.104	2668.98	1	1263.9	47.9%	2	K.VTEPSAPCQALVSIGDLQATFHGIR.S	2

gi|7705433|ref|NP_057

27.1%

564

66727

6.3

eukaryotic translation initiation factor 3 subunit L [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16293.16293.2	5.0259	0.4344	1788.737	1788.9346	1	2373.1	84.6%	2	K.VYEIQDIYENSWTK.L	2
*	step03.18848.18848.2	3.782	0.2648	2758.04	2758.12	1	869.0	52.1%	2	K.NTPWPEAEAIAPQVGNDAVFLILYK.E	2
*	step03.18901.18902.3	6.117	0.4967	2758.141	2758.12	1	1462.3	39.6%	2	K.NTPWPEAEAIAPQVGNDAVFLILYK.E	3
*	step06.21172.21172.2	4.0927	0.4607	1369.638	1369.7002	1	2119.8	90.9%	2	K.MLGYFSLVGLLR.L	2
*	step06.20681.20681.2	3.6563	0.396	1385.588	1385.6996	1	2092.9	90.9%	2	K.M*LGYFSLVGLLR.L	2
*	step05.16748.16748.2	4.0437	0.477	1521.731	1521.7417	1	1424.6	87.5%	2	R.LHSLLGDYYQAIK.V	2
*	step05.16746.16746.3	4.066	0.2172	1521.983	1521.7417	1	1405.1	56.2%	2	R.LHSLLGDYYQAIK.V	3
*	step05.16262.16262.2	2.8524	0.1365	2263.783	2264.678	1	413.2	52.8%	1	K.QNEQMHALLAIALTMYPMR.I	2
*	step03.14216.14216.2	3.5959	0.3496	1224.442	1224.3917	1	1017.3	83.3%	2	R.IDESIHLQLR.E	2
*	step02.16610.16610.2	3.8371	0.5187	1919.783	1920.0585	1	1865.8	70.0%	2	K.GDPQVYEELFSYSCPK.F	2
*	step02.12093.12093.2	5.4805	0.3799	1850.6	1850.0227	1	1968.7	73.3%	2	K.VFSDEVQQQAQLSTIR.S	2
*	step02.18218.18218.2	4.8447	0.5067	1539.714	1539.7139	1	1714.4	79.2%	2	K.LAGFLDLTEQEFR.I	2
*	step05.16674.16676.1	2.1913	0.1502	860.677	861.1063	1	830.4	83.3%	1	R.IQLLVFK.H	1
*	step05.16683.16683.2	2.649	0.1218	860.961	861.1063	2	509.1	91.7%	2	R.IQLLVFK.H	2
*	step05.15797.15797.2	3.008	0.2559	1075.228	1074.2164	1	840.0	100.0%	1	R.RYGDFFIR.Q	2
*	step02.15704.15704.2	2.8531	0.3775	918.236	918.03015	1	928.3	91.7%	2	R.YGDFFIR.Q	2

gi|21361647|ref|NP_00

27.0%

530

58951

6.9

putative adenosylhomocysteinase 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18214.18214.2	3.6619	0.4036	1818.548	1819.0703	1	1679.2	73.3%	2	R.EIEIAEQDMSALISLR.K	2
*	step05.138.138.3	5.0174	0.4906	3029.554	3029.3447	1	827.1	28.7%	1	R.WSACNIYSTQNEVAAALAEAGVAVFAWK.G	3
	step02.17523.17523.2	2.4669	0.2347	1715.921	1715.7509	1	982.9	83.3%	1	K.GESEDDFWWCIDR.C	2 2
	step03.12606.12606.2	2.3689	0.2472	1283.466	1283.416	1	484.8	77.3%	1	R.GIVEESVTGVHR.L	2 2
	step03.13506.13506.2	2.8375	0.1891	1549.348	1548.7808	1	836.3	84.6%	1	K.LCVPAMNVNDSVTK.Q	2 2
	step03.10356.10356.2	3.8824	0.4563	1564.889	1564.7802	1	827.0	84.6%	2	K.LCVPAM*NVNDSVTK.Q	2 2
	step05.14670.14670.2	2.6111	0.3214	1537.48	1537.7045	1	306.9	50.0%	1	R.SQVDHVIWPDGKR.V	2 2
	step05.14409.14409.2	2.6168	0.1385	1267.658	1267.498	8	554.4	66.7%	2	R.YKQDVYLLPK.K	2 2
*	step03.16958.16958.3	6.2467	0.5537	3076.229	3076.3833	1	2724.2	45.2%	1	K.KMDEYVASLHLPSFDAHLTELTDDQAK.Y	3
	step06.16717.16717.2	2.4704	0.3029	1256.597	1256.3939	5	266.5	66.7%	1	K.NGPFKPNYYR.Y	2 2

Similarities: gi|195539337|ref|NP_0(7:3)

gi|15431301|ref|NP_00

27.0%

248

29226

10.7

60S ribosomal protein L7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12368.12368.2	2.6757	0.1946	1193.463	1193.3329	2	856.1	65.0%	1	K.AGNFYVPAEPK.L	2
*	step03.16719.16719.2	2.7795	0.3896	1663.577	1663.9398	1	1307.6	69.2%	2	R.IVEPYIAWGYPNLK.S	2
*	step02.13793.13793.2	3.0243	0.4118	1171.501	1171.372	1	1711.8	95.0%	2	R.IALTDNALIAR.S	2
*	step05.19979.19979.2	4.1497	0.2488	2155.377	2155.4932	1	1064.6	64.7%	3	K.YGIICMEDLIHEIYTVGK.R	2
*	step03.17001.17001.2	4.6018	0.5413	2170.662	2171.4924	1	904.2	64.7%	2	K.YGIICM*EDLIHEIYTVGK.R	2
*	step05.17556.17556.2	3.4682	0.4477	2326.839	2327.679	1	350.2	50.0%	1	K.YGIICM*EDLIHEIYTVGKR.F	2
*	step06.20203.20203.2	3.6519	0.4846	1542.612	1541.7764	1	1341.1	86.4%	2	R.FKEANNFLWPFK.L	2
*	step03.17448.17448.2	2.8006	0.3004	1266.467	1266.4287	1	612.6	66.7%	2	K.EANNFLWPFK.L	2

gi|33286418|ref|NP_00

531

57937

7.8

pyruvate kinase isozymes M1/M2 isoform M2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.8428.8428.2	3.0739	0.3307	1198.373	1198.351	1	1087.9	85.0%	2	R.LDIDSPPITAR.N	2 2 2
	step03.16689.16689.2	3.6207	0.3978	2466.796	2466.7715	1	353.8	40.9%	1	R.TATESFASDPILYRPVAVALDTK.G	2 2 2 2
	step04.17211.17211.3	5.3865	0.4033	3018.825	3019.3977	1	957.8	36.1%	1	R.TATESFASDPILYRPVAVALDTKGPEIR.T	3 3 3 3
	step02.14229.14229.2	3.3914	0.2872	1781.607	1780.914	1	755.1	61.8%	1	K.GADFLVTEVENGGSLGSK.K	2 2 2 2
	step02.19893.19893.3	4.6448	0.473	1877.327	1877.11	1	1710.9	46.7%	2	K.FGVEQDVDM*VFASFIR.K	3 3 3 3
	step06.17114.17114.2	3.1423	0.3749	1909.868	1910.2828	1	419.0	53.1%	1	R.AGKPVICATQMLESMIK.K	2 2
*	step02.16930.16930.2	5.2378	0.5492	2175.796	2176.4092	1	1959.1	73.8%	2	R.LAPITSDPTEATAVGAVEASFK.C	2
*	step02.16955.16955.3	5.3041	0.5532	2176.497	2176.4092	1	2659.7	42.9%	2	R.LAPITSDPTEATAVGAVEASFK.C	3
	step03.17558.17558.2	4.6753	0.4861	2559.253	2558.864	1	1123.2	57.1%	1	R.GIFPVLCKDPVQEAWAEDVDLR.V	2 2
	step04.11298.11298.2	2.303	0.3777	996.756	996.16583	1	672.0	87.5%	1	R.VNFAM*NVGK.A	2 2

Similarities: gi|310128738|ref|XP_0(4:6)
gi|33286420|ref|NP_87(8:2)
gi|310128730|ref|XP_0(5:5)

gi|27597059|ref|NP_05

260

29910

5.7

dnaJ homolog subfamily C member 9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17525.17525.3	4.6573	0.5275	3245.802	3245.3708	1	760.5	29.8%	1	R.AVYDEQGTVDEDSPVLTQDRDWEAYWR.L	3
*	step02.16024.16024.2	3.4357	0.4913	1293.831	1293.4475	1	1946.3	90.0%	2	K.ISLEDIQAFEK.T	2
*	step02.17823.17823.2	4.4006	0.5623	2177.897	2178.43	1	1726.6	68.4%	2	R.NIIQQAIDAGEVPSYNAFVK.E	2
*	step02.8399.8399.2	2.3439	0.3241	1275.266	1275.3873	2	522.7	59.1%	1	K.ELGLDEGVDSLK.A	2

gi|198041662|ref|NP_0

286

29893

8.1

pyrroline-5-carboxylate reductase 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14546.14546.2	3.7365	0.4039	1101.293	1101.3483	1	1645.3	95.0%	2	R.MAGAIAQGLIR.A	2
*	step03.11785.11785.2	3.1592	0.4901	1508.444	1508.6615	1	1648.5	76.9%	2	K.VEAQHILASAPTDR.N	2
*	step05.17314.17314.2	3.3263	0.395	1968.496	1967.359	2	282.9	47.1%	3	R.VLPNLPCVVQEGAIVMAR.G	2
*	step06.18496.18496.2	2.6312	0.2501	1982.74	1983.3585	1	396.4	55.9%	2	R.VLPNLPCVVQEGAIVM*AR.G	2
*	step04.14024.14024.2	2.729	0.4221	1086.695	1087.2949	1	824.4	90.0%	2	R.IAAQTLLGTAK.M	2
*	step03.15819.15819.2	4.1971	0.4803	2403.13	2403.6272	1	1668.8	56.8%	1	R.SDVCTPGGTTIYGLHALEQGGLR.A	2

gi|17105394|ref|NP_00

156

17695

10.4

60S ribosomal protein L23a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16868.16868.2	3.0142	0.0997	1215.497	1215.4264	10	586.2	72.2%	1	R.NKLDHYAIIK.F	2
*	step03.11882.11882.2	2.3385	0.2811	1141.481	1141.3197	2	610.0	72.2%	1	K.FPLTTESAM*K.K	2
*	step03.13119.13119.2	2.8183	0.4073	1065.45	1065.2446	1	1164.7	87.5%	2	K.KLYDIDVAK.V	2
*	step02.8262.8262.1	1.8328	0.2876	936.723	937.07166	5	577.3	71.4%	1	K.LYDIDVAK.V	1
*	step02.8396.8396.2	3.0823	0.3728	1405.319	1405.5348	1	361.3	75.0%	2	R.LAPDYDALDVANK.I	2
*	step02.8442.8442.1	3.5235	0.2976	1405.709	1405.5348	1	792.1	66.7%	2	R.LAPDYDALDVANK.I	1

U	gi\|169160654\|ref\|XP_0	3	4	26.9%	119	13309	11.8	PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Homo sapiens]
U	gi\|310125374\|ref\|XP_0	3	4	26.9%	119	13309	11.8	PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Homo sapiens]
U	gi\|310118587\|ref\|XP_0	3	4	26.9%	119	13309	11.8	PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.20181.20181.2	2.3719	0.0868	2185.017	2185.2356	1	361.2	29.2%	1	R.TQVHGT#VT#GVDVSMNTHLK.A	2
step04.15381.15381.3	4.0394	0.38	1555.624	1555.7612	1	1425.6	54.2%	1	K.NREPVQLETLSIR.G	3 3
step04.15336.15336.2	4.0179	0.37	1555.701	1555.7612	1	578.2	79.2%	2	K.NREPVQLETLSIR.G	2 2

Similarities: gi|5902102|ref|NP_008(2:1)

gi|100913206|ref|NP_0

26.8%

1270

140958

6.8

ATP-dependent RNA helicase A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16245.16245.2	3.3353	0.3522	1160.391	1159.3116	1	1049.7	87.5%	3	K.NFLYAWCGK.R	2
*	step02.15761.15761.1	2.223	0.1866	1025.788	1026.1702	1	247.6	71.4%	1	R.DFVNYLVR.I	1
*	step02.15752.15752.2	3.1423	0.3512	1026.348	1026.1702	1	1095.4	92.9%	2	R.DFVNYLVR.I	2
*	step02.12134.12134.2	5.1544	0.5462	2165.517	2164.234	1	1031.0	67.5%	3	K.AENNSEVGASGYGVPGPTWDR.G	2
*	step06.17995.17995.2	3.9182	0.4849	1417.189	1417.6732	1	1294.1	79.2%	2	K.KLAAQSCALSLVR.Q	2
*	step03.9842.9842.2	2.607	0.218	1076.425	1076.1875	1	613.9	75.0%	2	K.LAQFEPSQR.Q	2
*	step02.17442.17442.3	4.0227	0.4837	2505.113	2503.7305	1	1092.7	42.1%	2	K.NELM*YQLEQDHDLQAILQER.E	3
*	step02.18381.18381.2	4.3195	0.4344	2050.681	2051.245	1	1000.8	71.9%	3	K.TTQVPQFILDDFIQNDR.A	2
*	step03.14314.14314.1	2.0236	0.1869	862.181	862.008	1	275.0	83.3%	1	R.FESILPR.P	1
*	step04.15484.15484.2	3.7064	0.4911	1504.528	1504.6727	1	1724.0	79.2%	2	R.GISHVIVDEIHER.D	2
*	step04.19230.19230.2	2.7965	0.3313	1418.278	1418.663	2	349.6	59.1%	1	R.DINTDFLLVVLR.D	2
*	step02.7601.7601.2	3.0466	0.3845	1176.329	1176.3038	1	955.6	77.8%	1	R.DVVQAYPEVR.I	2
*	step04.17638.17638.2	2.3444	0.357	2842.135	2841.223	2	224.1	29.5%	1	R.TYPVQEYFLEDCIQMTHFVPPPK.D	2
*	step04.17056.17056.2	2.2707	0.3527	2857.176	2857.2222	3	130.1	27.3%	1	R.TYPVQEYFLEDCIQM*THFVPPPK.D	2
*	step04.249.249.2	5.068	0.5004	2434.987	2434.8342	1	1110.4	47.5%	2	R.LSMSQLNEKETPFELIEALLK.Y	2
*	step03.20676.20676.2	4.1673	0.4943	2450.124	2450.8337	1	205.5	40.0%	2	R.LSM*SQLNEKETPFELIEALLK.Y	2
*	step03.20661.20661.3	5.7741	0.4798	2451.58	2450.8337	1	1931.6	41.2%	2	R.LSM*SQLNEKETPFELIEALLK.Y	3
*	step03.1000.1000.2	3.2335	0.2435	1403.436	1403.645	2	730.2	81.8%	4	K.ETPFELIEALLK.Y	2
*	step06.18643.18643.2	2.9886	0.2087	1466.922	1465.7245	1	743.3	68.2%	2	R.YQILPLHSQIPR.E	2
*	step05.14525.14525.2	4.1766	0.3529	1286.77	1286.5446	1	763.5	77.3%	4	R.KVFDPVPVGVTK.V	2
*	step03.14034.14034.2	2.4277	0.1065	1159.509	1158.3716	1	686.8	70.0%	1	K.VFDPVPVGVTK.V	2
*	step06.19015.19015.2	5.2039	0.6094	2070.523	2070.3167	1	1045.4	61.8%	2	K.LFTAHNNMTNYATVWASK.T	2
*	step06.18245.18245.2	2.6628	0.5017	1221.992	1222.4589	1	1098.8	85.0%	1	R.TPLHEIALSIK.L	2
*	step06.18280.18280.1	2.3553	0.1164	1223.087	1222.4589	2	487.0	60.0%	2	R.TPLHEIALSIK.L	1
*	step03.17110.17110.2	2.6959	0.4868	1971.323	1972.231	1	732.9	70.6%	2	K.AIEPPPLDAVIEAEHTLR.E	2
*	step03.18856.18856.2	5.7363	0.4602	2078.779	2078.2722	1	2630.7	73.5%	3	R.FSDHVALLSVFQAWDDAR.M	2
*	step04.13341.13341.2	2.3629	0.1101	819.676	819.0082	1	641.8	91.7%	2	R.LNMATLR.M	2
*	step02.8360.8360.2	3.8062	0.3501	1487.307	1487.6111	1	919.6	70.8%	2	K.SSVNCPFSSQDMK.Y	2
*	step04.17712.17712.2	3.3634	0.3248	1318.471	1318.5004	1	1016.5	80.0%	2	K.YPSPFFVFGEK.I	2
*	step06.22098.22098.2	4.7395	0.5935	1733.956	1733.1516	1	1173.2	76.7%	2	K.GMTLVTPLQLLLFASK.K	2
*	step05.16074.16074.2	2.6149	0.1341	1641.991	1640.8596	1	928.5	67.9%	1	K.LQISHEAAACITGLR.A	2
*	step04.14312.14312.1	1.9074	0.2084	777.566	778.0227	2	212.3	80.0%	1	R.MLNMIR.Q	1

gi|24308127|ref|NP_06

26.7%

793

91080

7.2

dnaJ homolog subfamily C member 10 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8375.8375.2	3.689	0.3539	1351.523	1351.487	1	829.9	85.0%	2	R.AYEVLKDEDLR.K	2
*	step02.13012.13012.2	4.0982	0.4265	2079.907	2080.1155	1	1524.1	62.5%	2	K.GLEDNQGGQYESWNYYR.Y	2
*	step02.17698.17698.2	5.7416	0.5827	2076.613	2075.217	1	2025.9	81.2%	1	R.YDFGIYDDDPEIITLER.R	2
*	step05.17984.17984.2	2.7734	0.2262	1400.13	1400.6062	1	736.7	77.3%	2	K.GVNSYPSLFIFR.S	2
*	step05.17002.17002.2	2.9617	0.3381	1404.256	1404.6199	1	630.1	72.7%	2	K.ESLVSFAMQHVR.S	2
*	step03.16452.16452.2	3.6764	0.454	1335.646	1335.5308	1	1681.1	86.4%	2	K.NSILFLNSLDAK.E	2
*	step03.18992.18992.2	5.1548	0.6305	2845.363	2845.1528	1	1245.3	52.2%	5	K.EIYLEVIHNLPDFELLSANTLEDR.L	2
*	step02.18552.18552.2	4.3801	0.5038	2766.662	2767.069	1	1135.8	47.8%	2	R.FDCSSAPDICSNLYVFQPSLAVFK.G	2
*	step03.17781.17781.2	3.3905	0.481	1167.137	1167.4216	1	946.6	88.9%	2	K.ILYDILAFAK.E	2
*	step03.14166.14166.2	3.3004	0.4556	1107.518	1107.2847	1	1256.6	83.3%	2	R.ASNLLYGQLK.F	2
*	step06.18644.18644.3	3.7939	0.3992	3140.502	3140.3972	1	653.9	29.8%	2	R.TLTGLINVGSIDCQQYHSFCAQENVQR.Y	3
*	step03.18556.18558.2	5.7206	0.5901	2465.026	2465.7852	1	911.8	57.1%	2	R.IWGLGFLPQVSTDLTPQTFSEK.V	2
*	step03.13677.13677.1	1.8955	0.2883	915.584	916.0971	2	477.6	62.5%	1	K.AIAALISEK.L	1
*	step03.13648.13648.2	3.0307	0.4208	916.234	916.0971	1	845.6	93.8%	2	K.AIAALISEK.L	2
*	step04.17433.17433.2	5.392	0.5692	1529.838	1528.8188	1	1654.4	84.6%	2	K.AIAALISEKLETLR.N	2

gi|38683855|ref|NP_06

26.7%

689

78550

6.4

pentatricopeptide repeat-containing protein 3, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15171.15171.2	3.2733	0.2649	1685.609	1685.8972	1	1265.8	66.7%	2	K.VEGTDVTGIEEVVIPK.K	2
*	step05.16492.16492.2	3.3228	0.4802	1342.517	1342.5697	1	1941.9	83.3%	1	K.VAVLQALASTVNR.D	2
*	step02.17850.17850.2	4.7612	0.5354	2703.926	2703.9617	1	948.8	50.0%	2	R.DTTAVPYVFQDDPYLMPASSLESR.S	2
*	step03.16978.16978.2	3.6208	0.3805	2428.986	2428.7817	1	532.8	52.6%	3	K.DIAEPHIPCLMPEYFEPQIK.D	2
*	step03.16219.16219.2	3.1415	0.3596	2444.813	2444.781	1	479.5	50.0%	2	K.DIAEPHIPCLM*PEYFEPQIK.D	2
7	step03.15396.15396.1	2.0486	0.1443	756.736	756.9565	3	335.2	80.0%	2	K.ILELLR.H	1 1 1 1 1 1 1 1 1
7	step03.15391.15391.2	2.2222	0.1225	757.284	756.9565	1	366.8	90.0%	1	K.ILELLR.H	2 2 2 2 2 2 2 2 2
*	step06.18799.18799.2	3.2316	0.2929	1516.656	1516.8097	1	675.4	75.0%	2	K.VKPNLQTFNTILK.C	2
*	step04.14533.14533.2	2.4038	0.1663	1286.594	1286.4614	2	700.9	75.0%	1	R.LFDQPGDPLKR.S	2
*	step04.744.744.2	3.9364	0.4801	1761.285	1762.0839	1	1725.0	78.6%	2	R.SSFIIYDIMNELMGK.R	2
*	step03.20161.20161.2	4.4727	0.4339	1777.994	1778.0833	1	1598.1	75.0%	1	R.SSFIIYDIMNELM*GK.R	2
*	step04.16552.16552.2	4.1655	0.3949	1499.403	1499.7361	1	2000.5	87.5%	4	R.DLELAYQVHGLLK.T	2
*	step02.17207.17207.2	3.6266	0.5211	1350.469	1350.5209	1	1822.9	86.4%	2	R.SELLNELMDSAK.V	2
*	step03.19476.19476.2	3.1186	0.2878	3103.203	3104.4512	1	581.8	37.5%	2	K.VSNSPSQAIEVVELASAFSLPICEGLTQR.V	2
*	step03.19452.19452.3	6.1071	0.3584	3104.212	3104.4512	1	737.8	29.5%	3	K.VSNSPSQAIEVVELASAFSLPICEGLTQR.V	3
*	step02.8548.8548.2	3.9086	0.4121	1411.324	1410.578	1	1134.6	81.8%	2	R.VMSDFAINQEQK.E	2

gi|117606320|ref|NP_0

26.7%

258

29188

7.2

spindlin-2A [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.15134.15134.2	4.3664	0.5893	1811.823	1812.0176	1	1839.8	73.5%	2	R.VASSHISDANLANTIIGK.A	2 2
step05.11381.11381.2	3.8265	0.3922	1191.661	1191.49	1	970.5	80.0%	2	R.GMVLAQAPIMK.A	2 2
step02.19444.19444.2	5.705	0.4397	2347.839	2347.629	1	1928.7	66.7%	2	K.DPVLYMYQLLDDYKEGDLR.I	2 2 2
step04.14898.14898.2	2.7603	0.1077	853.784	854.02747	1	764.6	91.7%	2	K.PSVYFIK.F	2 2 2 2
step02.18332.18332.2	5.2316	0.4996	1790.601	1789.9641	1	2527.5	88.5%	11	K.FDDDFHIYVYDLVK.K	2 2 2 2

Similarities: gi|112293285|ref|NP_0(3:2)
gi|56682945|ref|NP_00(5:0)
gi|115527078|ref|NP_0(2:3)

gi|39780588|ref|NP_06

26.4%

804

91810

7.4

pre-rRNA-processing protein TSR1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17206.17206.2	2.5492	0.3682	1514.623	1514.7726	1	826.3	70.8%	1	R.ISLPEAMQLLQDR.D	2
*	step04.16656.16656.2	6.1239	0.5188	2531.865	2531.8237	1	1806.1	61.9%	2	R.DTGTVHLNELGNTQNFMLLCPR.L	2
*	step04.16663.16663.3	3.9606	0.3406	2532.423	2531.8237	1	1224.8	41.7%	1	R.DTGTVHLNELGNTQNFMLLCPR.L	3
*	step04.15936.15936.2	3.9723	0.3613	2546.941	2547.823	1	774.5	54.8%	2	R.DTGTVHLNELGNTQNFM*LLCPR.L	2
*	step03.17425.17425.2	4.5183	0.4569	1714.697	1715.0515	1	2687.1	85.7%	2	K.LLLLDTQQEAGMLLR.Q	2
*	step03.16698.16698.2	4.3307	0.453	1730.869	1731.051	1	2554.5	85.7%	2	K.LLLLDTQQEAGM*LLR.Q	2
*	step03.17199.17199.2	5.6029	0.5167	2536.955	2535.8354	1	1188.7	56.8%	3	R.AYLFAHAVDFVPSEENNLVGTLK.I	2
*	step06.18682.18682.2	2.7326	0.2807	1536.677	1537.8077	1	1447.3	75.0%	2	R.LLHIVGYGDFQM*K.Q	2
*	step02.8633.8633.2	3.8059	0.3894	1578.374	1578.7256	1	1088.2	83.3%	4	R.LEEMFPDEVDTPR.D	2
*	step02.7716.7716.2	3.4291	0.3516	1594.647	1594.725	1	1214.1	75.0%	2	R.LEEM*FPDEVDTPR.D	2
*	step03.13731.13731.2	2.5463	0.4144	1917.891	1918.0555	1	550.5	60.0%	2	R.TSPWDPKENLPQDYAR.I	2
*	step04.16528.16528.2	3.2611	0.2279	1048.914	1049.3368	1	1430.9	93.8%	2	K.MSVLNMVVR.R	2
*	step04.14542.14542.2	2.3465	0.0962	1065.378	1065.3362	2	1065.2	87.5%	1	K.MSVLNM*VVR.R	2
*	step04.15404.15404.2	2.6692	0.2975	1065.532	1065.3362	1	915.0	93.8%	2	K.M*SVLNMVVR.R	2
*	step04.13074.13074.2	2.8487	0.3196	1081.262	1081.3356	1	1061.1	93.8%	2	K.MSVLNMVVR.R	2
*	step05.16193.16193.2	2.6322	0.1807	1508.158	1507.7117	1	686.2	63.6%	2	K.AKEELIFHCGFR.R	2
*	step05.13242.13242.2	2.5186	0.3946	1374.707	1373.496	1	298.6	62.5%	1	R.ASPLFSQHTAADK.H	2
*	step06.17779.17779.2	2.7837	0.2248	2155.701	2155.4019	1	370.8	44.7%	1	K.SNGMHSLIATGHLM*SVDPDR.M	2
*	step03.16992.16992.2	3.1302	0.365	1531.798	1531.7798	1	1110.0	81.8%	2	R.EDVLWFKPVELR.T	2
*	step02.15124.15124.2	2.8261	0.4431	1312.122	1312.5175	1	1424.1	85.0%	2	K.SQDTVLMNLYK.R	2
*	step02.13414.13414.2	2.8054	0.4164	1328.443	1328.5168	1	776.1	75.0%	1	K.SQDTVLM*NLYK.R	2
*	step02.16910.16910.2	2.3676	0.0809	2115.673	2116.2578	50	226.4	28.3%	1	K.S#QDT#VLM*NLYKRVFPK.W	2
*	step03.17628.17628.2	4.4867	0.5038	1892.009	1891.1565	1	783.2	64.3%	1	K.WTYDPYVPEPVPWLK.S	2

U	gi\|35493811\|ref\|NP_90	14	24	26.0%	530	59380	10.1	RNA-binding protein 39 isoform a [Homo sapiens]
U	gi\|4757926\|ref\|NP_004	14	24	26.3%	524	58657	10.1	RNA-binding protein 39 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.7856.7856.2	3.3006	0.1957	2075.88	2076.1477	1	251.9	45.8%	1	K.DKS#PVREPIDNLTPEER.D	2
step04.13032.13032.2	2.9483	0.3455	1213.36	1213.4257	1	753.8	94.4%	2	R.TVFCM*QLAAR.I	2 2
step02.17606.17606.2	3.4203	0.4793	1272.567	1272.3853	1	1302.4	75.0%	2	R.DLEEFFSTVGK.V	2
step04.16206.16206.3	5.3155	0.414	1553.498	1552.8405	1	2643.0	57.1%	2	R.VLGVPIIVQASQAEK.N	3
step05.17723.17723.2	4.0997	0.4482	1910.057	1909.1984	1	1439.5	70.0%	1	R.LYVGSLHFNITEDMLR.G	2 2
step05.16780.16780.2	4.8185	0.5837	1925.707	1925.1978	1	1119.6	76.7%	2	R.LYVGSLHFNITEDM*LR.G	2 2
step03.15789.15789.1	1.8316	0.1252	922.67	923.0499	1	141.5	50.0%	1	R.GIFEPFGR.I	1
step03.15782.15782.2	2.2392	0.3372	923.373	923.0499	1	943.9	85.7%	1	R.GIFEPFGR.I	2
step02.15585.15585.2	4.546	0.4837	1610.733	1610.8357	1	1394.8	80.8%	2	R.IESIQLMMDSETGR.S	2
step02.7676.7676.2	4.8368	0.4703	1642.294	1642.8346	1	1738.2	84.6%	2	R.IESIQLMMDSETGR.S	2
step02.15539.15539.2	4.6391	0.4762	1583.291	1582.6859	1	1185.7	76.9%	2	K.GYGFITFSDSECAK.K	2
step04.15907.15907.2	4.272	0.401	1775.675	1775.0656	1	1106.9	66.7%	2	K.ALEQLNGFELAGRPMK.V	2
step04.15541.15541.2	2.892	0.5057	1789.911	1791.065	1	322.4	60.0%	2	K.ALEQLNGFELAGRPM*K.V	2
step02.12839.12839.2	3.9821	0.4814	1830.708	1830.8419	1	1575.2	65.6%	2	R.TDASSASSFLDSDELER.T	2

Similarities: gi|116734694|ref|NP_0(3:11)

U	gi\|156564363\|ref\|NP_5	9	18	26.0%	450	49960	5.1	tubulin alpha-3C/D chain [Homo sapiens]
U	gi\|46409270\|ref\|NP_99	9	18	26.0%	450	49917	5.1	tubulin alpha-3E chain [Homo sapiens]
U	gi\|17921993\|ref\|NP_00	9	18	26.0%	450	49960	5.1	tubulin alpha-3C/D chain [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13572.13572.2	2.6821	0.1924	1719.032	1719.8802	2	258.9	53.8%	2	R.NLDIERPTYTNLNR.L	2 2 2 2 2 2
step05.19092.19092.2	2.6614	0.2555	1458.927	1458.7286	1	539.0	65.4%	1	R.LIGQIVSSITASLR.F	2 2
step02.18275.18275.2	6.4085	0.5679	2411.873	2410.6665	1	1170.6	60.0%	5	R.FDGALNVDLTEFQTNLVPYPR.I	2 2 2 2 2 2
step06.19564.19564.2	3.6774	0.501	1757.616	1758.0531	1	1259.2	80.0%	2	R.IHFPLATYAPVISAEK.A	2 2 2 2 2
step02.8702.8702.1	1.831	0.3344	1015.593	1016.1735	1	421.7	66.7%	1	K.DVNAAIATIK.T	1 1 1 1
step02.8709.8709.2	3.5629	0.3964	1015.768	1016.1735	1	1110.9	88.9%	2	K.DVNAAIATIK.T	2 2 2 2
step04.14516.14516.2	3.7532	0.4283	1825.674	1826.0858	1	822.8	67.6%	2	K.VGINYQPPTVVPGGDLAK.V	2 2 2 2 2 2
step04.16965.16965.2	4.1928	0.3542	1866.329	1866.1254	1	2053.3	71.9%	1	R.AVCMLSNTTAIAEAWAR.L	2 2 2 2 2
step02.13732.13732.2	2.4505	0.279	888.294	888.06573	2	792.2	100.0%	2	K.FDLMYAK.R	2 2 2 2 2 2 2

gi|7662645|ref|NP_054

26.0%

258

29396

9.4

28S ribosomal protein S18b, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15119.15119.2	4.3168	0.4727	2463.056	2462.6501	1	742.6	52.4%	2	K.APSEEDSLSSVPISPYKDEPWK.Y	2
*	step05.10209.10209.2	2.6513	0.4114	1172.339	1172.3468	1	591.8	77.8%	4	K.VVGNPCPICR.D	2
*	step06.18960.18960.2	4.2265	0.4841	1787.606	1788.0425	1	1608.7	78.6%	1	R.DHGLLIYHIPQVEPR.D	2
*	step06.13744.13744.2	4.7854	0.5256	2280.743	2281.5337	1	1424.9	60.5%	2	R.RLYQGHLQEESGPPPESMPK.M	2
*	step06.13746.13746.3	6.2735	0.4222	2282.188	2281.5337	1	3277.2	52.6%	2	R.RLYQGHLQEESGPPPESMPK.M	3
*	step06.13462.13463.2	3.6843	0.4596	2296.629	2297.5332	1	250.2	55.3%	2	R.RLYQGHLQEESGPPPESM*PK.M	2
*	step06.13457.13457.3	5.8539	0.3887	2297.375	2297.5332	1	2945.2	48.7%	2	R.RLYQGHLQEESGPPPESM*PK.M	3

U	gi\|4506635\|ref\|NP_000	3	4	25.9%	135	15860	11.3	60S ribosomal protein L32 [Homo sapiens]
U	gi\|55743130\|ref\|NP_00	3	4	25.9%	135	15860	11.3	60S ribosomal protein L32 [Homo sapiens]
U	gi\|55743128\|ref\|NP_00	3	4	25.9%	135	15860	11.3	60S ribosomal protein L32 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.17189.17189.2	2.9129	0.2151	1637.503	1636.8977	2	338.7	53.6%	2	K.GQILM*PNIGYGSNKK.T	2
step03.11796.11796.2	3.6916	0.477	1466.728	1466.5717	1	2011.9	83.3%	1	K.SYCAEIAHNVSSK.N	2
step04.11330.11330.2	2.3159	0.1834	743.363	742.8899	6	693.6	91.7%	1	R.AAQLAIR.V	2

gi|33188463|ref|NP_87

25.8%

396

45835

9.5

28S ribosomal protein S9, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18157.18157.2	3.4801	0.5344	1456.548	1456.7096	1	2048.7	83.3%	4	R.AIAYLFPSGLFEK.R	2
*	step06.20021.20021.2	4.2454	0.4974	2285.889	2286.532	1	800.3	55.6%	2	R.AIQWGEDGRPFHYLFYTGK.Q	2
*	step03.18414.18414.2	4.9427	0.4254	1789.603	1790.1136	1	2467.2	88.5%	4	R.WLIKEELEEMLVEK.L	2
*	step04.15760.15760.2	2.7008	0.0911	1266.483	1265.4127	2	826.1	77.8%	1	K.EELEEM*LVEK.L	2
*	step02.17320.17320.2	2.7949	0.1706	1400.838	1401.6128	1	1585.6	80.0%	1	K.LSDLDYMQFIR.L	2
*	step02.15395.15395.2	4.15	0.3257	1418.428	1417.6122	1	1215.1	75.0%	2	K.LSDLDYM*QFIR.L	2
*	step04.17191.17191.2	4.1757	0.5974	2183.811	2184.4792	1	781.3	70.6%	2	R.IKVNGIDYQLYFPITQDR.E	2
*	step02.17370.17370.2	4.6419	0.6388	1942.791	1943.1482	1	1291.3	70.0%	2	K.VNGIDYQLYFPITQDR.E	2
*	step05.17796.17796.2	3.1981	0.3808	1566.398	1566.8077	1	540.3	81.8%	2	R.EQLMFPFHFVDR.L	2
*	step05.17132.17132.2	2.987	0.3769	1582.338	1582.8071	1	294.6	72.7%	2	R.EQLM*FPFHFVDR.L	2
*	step02.17688.17688.2	2.6411	0.2521	1872.712	1873.07	1	463.7	64.3%	1	K.ALCSFVTEDEVEWMR.Q	2

gi|13129110|ref|NP_07

25.7%

342

36724

5.2

methylosome protein 50 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11630.11630.2	3.1881	0.4077	1453.443	1453.6053	1	552.8	63.9%	5	R.KET#PPPLVPPAAR.E	2
*	step05.15486.15486.2	3.8728	0.3437	1723.42	1723.912	1	1910.2	81.2%	2	R.YRSDGALLLGASSLSGR.C	2
*	step02.14642.14642.2	4.4387	0.5824	1404.647	1404.5515	1	1751.9	78.6%	2	R.SDGALLLGASSLSGR.C	2
*	step05.18669.18669.2	3.1831	0.4426	1268.564	1268.4812	1	1010.8	88.9%	2	R.CWAGSLWLFK.D	2
*	step04.16226.16226.3	3.6098	0.4642	2901.931	2903.141	1	541.0	32.7%	2	K.FCKYEHDDIVSTVSVLSSGTQAVSGSK.D	3
*	step02.15795.15795.2	5.8896	0.5732	2467.087	2467.6282	1	2822.4	67.4%	2	K.YEHDDIVSTVSVLSSGTQAVSGSK.D	2
*	step04.17182.17182.2	4.1722	0.4595	1664.624	1664.8861	1	2312.0	84.6%	3	K.VWDLAQQVVLSSYR.A	2
*	step03.16027.16027.2	2.3583	0.233	917.325	917.0868	1	549.7	91.7%	1	R.ILLWDTR.C	2

gi|115527078|ref|NP_0

25.6%

258

29207

6.8

spindlin-3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.16680.16680.2	4.2517	0.4036	1856.914	1857.183	1	403.5	53.1%	2	K.GTVLDQVPVNPSLYLIK.Y	2 2
*	step03.14613.14613.2	3.5498	0.5238	2062.734	2062.1848	1	1326.2	68.8%	1	K.AVEHIFETEEGSKNEWR.G	2
	step04.13334.13334.2	2.4805	0.2195	1213.965	1213.4323	1	1124.8	75.0%	1	R.TGMVIHQVEAK.P	2 2
	step04.14898.14898.2	2.7603	0.1077	853.784	854.02747	1	764.6	91.7%	2	K.PSVYFIK.F	2 2 2 2
	step02.18332.18332.2	5.2316	0.4996	1790.601	1789.9641	1	2527.5	88.5%	11	K.FDDDFHIYVYDLVK.T	2 2 2 2

Similarities: gi|112293285|ref|NP_0(4:1)
gi|56682945|ref|NP_00(2:3)
gi|117606320|ref|NP_0(2:3)

U	gi\|153791492\|ref\|NP_0	25	54	25.5%	914	105473	5.6	eukaryotic translation initiation factor 3 subunit C [Homo sapiens]
U	gi\|83700233\|ref\|NP_00	25	54	25.5%	913	105344	5.7	eukaryotic translation initiation factor 3 subunit C [Homo sapiens]
U	gi\|4503525\|ref\|NP_003	25	54	25.5%	913	105344	5.7	eukaryotic translation initiation factor 3 subunit C [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.16458.16458.2	3.7637	0.3769	1291.546	1291.4812	1	1257.4	88.9%	2	K.RFEELTNLIR.T	2
step02.16250.16250.2	3.4026	0.2454	1135.486	1135.2949	1	1312.5	93.8%	2	R.FEELTNLIR.T	2
step02.16425.16425.2	2.9682	0.3962	1238.495	1238.4054	1	1267.6	88.9%	2	K.CLEEFELLGK.A	2
step02.20024.20024.2	5.6197	0.5262	1980.013	1980.1603	1	2732.0	80.0%	3	R.ILADLEDYLNELWEDK.E	2
step03.18669.18669.2	5.5091	0.5029	2295.146	2294.4993	1	1531.0	61.1%	6	R.ILADLEDYLNELWEDKEGK.K	2
step03.11732.11732.1	1.8625	0.3004	1226.564	1227.3046	1	440.3	66.7%	1	R.DFESHITSYK.Q	1
step03.11625.11625.2	2.6767	0.4635	1227.382	1227.3046	1	616.6	72.2%	2	R.DFESHITSYK.Q	2
step04.13443.13443.2	3.2445	0.3438	1168.443	1168.368	1	888.6	80.0%	2	K.GTEITHAVVIK.K	2
step05.13833.13833.2	2.2264	0.1828	1085.387	1085.2822	1	1006.2	81.2%	1	K.KLNEILQAR.G	2
step02.9599.9599.2	3.0826	0.2502	957.232	957.1093	1	1145.5	92.9%	2	K.LNEILQAR.G	2
step04.398.398.3	6.8676	0.5713	2749.431	2748.2114	1	1561.0	39.0%	4	R.AAQIELLQLLVQIAAENNLGEGVIVK.I	3
step03.15327.15327.2	2.9651	0.3348	1061.408	1061.2509	1	1204.1	87.5%	2	R.GCILTLVER.M	2
step02.5780.5780.2	6.4359	0.5158	2137.65	2138.1702	1	3679.5	80.6%	2	K.SEQDQAENEGEDSAVLMER.L	2
step02.5393.5393.2	6.1953	0.5759	2154.635	2154.1697	1	2933.1	72.2%	2	K.SEQDQAENEGEDSAVLM*ER.L	2
step06.19477.19477.3	5.2925	0.3984	2962.164	2963.3845	1	1121.3	38.5%	1	R.DLMLMSHLQDNIQHADPPVQILYNR.T	3
step06.18013.18013.3	4.2152	0.2915	2995.425	2995.3833	1	1067.1	37.5%	2	R.DLMLMSHLQDNIQHADPPVQILYNR.T	3
step05.16170.16170.2	3.5359	0.4844	1297.439	1296.5579	1	1937.0	85.0%	3	R.TMVQLGICAFR.Q	2
step03.12658.12660.3	3.8088	0.3061	1497.855	1497.5955	2	1272.6	48.1%	1	K.DAHNALLDIQSSGR.A	3
step06.18977.18977.3	3.815	0.2232	1311.92	1311.5988	1	2036.2	59.1%	1	R.AKELLGQGLLLR.S	3
step06.18894.18894.2	4.0671	0.3699	1312.713	1311.5988	1	1385.0	86.4%	2	R.AKELLGQGLLLR.S	2
step03.16470.16470.2	3.1656	0.3236	1112.547	1112.3477	1	1276.6	88.9%	2	K.ELLGQGLLLR.S	2
step05.13938.13938.2	2.9594	0.3048	1249.442	1249.3915	1	925.3	77.8%	2	K.TCHSFIINEK.M	2
step03.16734.16734.2	5.5817	0.5679	2557.128	2557.996	1	994.7	52.4%	2	K.MIINEELMASLDQPTQTVVMHR.T	2
step03.16460.16460.2	4.9936	0.5321	2573.71	2573.9954	1	688.5	52.4%	1	K.MIINEELMASLDQPTQTVVM*HR.T	2
step02.13115.13115.2	4.4875	0.431	1755.199	1755.9508	1	793.9	76.7%	4	R.TEPTAQQNLALQLAEK.L	2

gi|21735415|ref|NP_00

25.5%

599

65171

4.6

major centromere autoantigen B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16965.16965.2	2.9544	0.2732	1431.594	1431.7017	1	1283.7	91.7%	3	R.FNIPPSTLSTILK.N	2
*	step04.9922.9922.1	1.8584	0.2774	655.621	655.809	1	340.5	75.0%	1	R.AAGLPVK.G	1
*	step02.17513.17513.2	5.3048	0.5504	2141.732	2141.3037	1	1821.2	75.0%	2	R.IAEELGMDDFTASNGWLDR.F	2
*	step02.15848.15848.2	5.76	0.6201	2156.863	2157.303	1	3193.0	75.0%	2	R.IAEELGM*DDFTASNGWLDR.F	2
*	step06.14466.14466.2	2.7187	0.5192	1128.704	1129.2455	1	817.3	75.0%	4	R.HGVVSCSGVAR.A	2
*	step04.11916.11916.2	4.9363	0.4049	2213.726	2213.3496	1	867.3	58.7%	12	R.TPAAPASPAAVPSEGSGGSTTGWR.A	2
*	step02.13305.13305.2	3.1749	0.3828	1477.028	1477.6359	1	1171.7	73.1%	2	R.LSVLLCANADGSEK.L	2
*	step05.16178.16178.2	4.7154	0.476	2252.955	2253.618	1	855.7	52.4%	5	R.LSVLLCANADGSEKLPPLVAGK.S	2
*	step05.16179.16179.3	3.7697	0.4682	2253.79	2253.618	1	1002.9	36.9%	2	R.LSVLLCANADGSEKLPPLVAGK.S	3
*	step06.16528.16528.1	2.2332	0.3963	794.74	795.0047	1	573.0	71.4%	1	K.LPPLVAGK.S	1
*	step03.9393.9393.2	3.5952	0.25	946.376	946.0833	1	1057.5	83.3%	2	K.GGVTTQALAK.Y	2
*	step05.14615.14615.2	2.438	0.1841	742.247	741.94507	1	556.5	91.7%	2	R.VLLLAGR.L	2
*	step02.8463.8463.1	2.0098	0.3695	1231.805	1232.369	1	235.7	59.1%	2	R.LAAQSLDTSGLR.H	1
*	step02.8421.8421.2	3.1951	0.4311	1232.041	1232.369	1	1779.5	95.5%	2	R.LAAQSLDTSGLR.H	2
*	step02.12123.12123.2	4.7074	0.5311	1622.521	1621.7733	1	1784.6	75.0%	2	R.EAGFGGGPNATITTSLK.S	2
*	step04.15441.15441.2	3.4924	0.4176	1383.462	1383.534	1	402.6	70.0%	2	K.RYLTSFPIDDR.V	2
*	step02.14139.14139.2	2.7558	0.3629	1228.489	1227.3477	1	578.5	83.3%	2	R.YLTSFPIDDR.V	2

U	gi\|16332360\|ref\|NP_27	13	21	25.5%	526	59273	4.6	cell division protein kinase 11B isoform 3 [Homo sapiens]
U	gi\|16332364\|ref\|NP_27	13	21	17.9%	748	87138	5.4	cell division protein kinase 11B isoform 5 [Homo sapiens]
U	gi\|16332362\|ref\|NP_27	13	21	18.2%	737	85906	5.3	cell division protein kinase 11B isoform 4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.8331.8332.2	3.2639	0.4955	1286.523	1286.415	1	1377.3	90.0%	2	R.IEEGTYGVVYR.A	2 2 2
step05.16282.16282.2	2.7428	0.2019	1835.688	1836.2091	1	476.2	50.0%	1	K.SLMETMKQPFLPGEVK.T	2 2 2
step05.14194.14194.2	2.3377	0.1783	1867.47	1868.2079	1	404.8	63.3%	1	K.SLMETMKQPFLPGEVK.T	2 2 2
step05.17133.17133.2	2.9449	0.1797	988.408	988.27313	1	727.6	92.9%	2	K.TLMIQLLR.G	2 2 2
step06.18926.18926.2	2.8939	0.4598	1367.833	1367.6191	1	1518.9	79.2%	1	K.TSNLLLSHAGILK.V	2 2 2
step05.17817.17817.2	2.4821	0.4483	1468.469	1468.7236	1	565.7	68.2%	2	K.AYTPVVVTLWYR.A	2 2
step03.14376.14376.2	2.561	0.2966	912.299	912.10846	1	760.0	93.8%	1	R.APELLLGAK.E	2 2 2
step04.14611.14611.2	3.7025	0.4399	1509.851	1509.6714	1	872.0	81.8%	2	K.MTFSEHPYNNLR.K	2 2 2
step02.17565.17565.2	4.0879	0.4534	1656.699	1656.8843	1	1587.5	78.6%	2	R.FGALLSDQGFDLMNK.F	2 2 2
step02.16244.16244.2	4.7851	0.492	1672.051	1672.8837	1	1378.1	75.0%	2	R.FGALLSDQGFDLM*NK.F	2 2 2
step05.15551.15551.1	1.8266	0.2139	1000.493	1001.1623	5	297.5	71.4%	1	K.FLTYFPGR.R	1 1 1
step03.14259.14259.2	3.1129	0.3346	1565.466	1565.7114	1	1028.7	75.0%	2	R.ISAEDGLKHEYFR.E	2 2 2
step02.17013.17013.2	3.369	0.502	1944.7	1944.2394	1	583.8	56.2%	2	R.ETPLPIDPSM*FPTWPAK.S	2 2 2

Similarities: gi|16332358|ref|NP_27(13:0)
gi|148763345|ref|NP_2(12:1)

gi|16579885|ref|NP_00

25.3%

427

47697

11.1

60S ribosomal protein L4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13945.13945.2	3.1377	0.5879	1581.575	1581.7491	1	2023.2	82.1%	2	R.PLISVYSEKGESSGK.N	2
*	step04.11568.11568.2	2.7102	0.2438	1185.64	1185.2893	1	594.9	65.0%	2	R.SGQGAFGNMCR.G	2
*	step05.17724.17726.2	4.3948	0.5243	1938.056	1938.3145	1	2201.1	75.0%	1	R.YAICSALAASALPALVMSK.G	2
*	step05.16778.16778.2	3.9552	0.3601	1954.563	1954.3138	1	1363.5	66.7%	2	R.YAICSALAASALPALVM*SK.G	2
*	step03.16478.16478.2	3.1848	0.3808	2313.86	2314.66	1	1412.6	68.4%	1	R.IEEVPELPLVVEDKVEGYKK.T	2
*	step02.13728.13728.1	1.8104	0.137	785.677	785.99457	3	289.4	75.0%	1	K.EAVLLLK.K	1
*	step05.14667.14667.2	3.7819	0.3645	1762.801	1762.9816	1	1525.7	82.1%	1	R.RGPCIIYNEDNGIIK.A	2
*	step03.14991.14991.2	3.5907	0.2733	1281.647	1281.4417	1	1203.3	83.3%	1	R.KLDELYGTWR.K	2
*	step03.9572.9572.2	3.2828	0.2393	957.603	957.1093	1	1080.7	85.0%	1	K.AAAAAAALQAK.S	2

gi|310115367|ref|XP_0

25.3%

194

23079

8.3

PREDICTED: protein FAM115A-like isoform 1, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18796.18796.2	2.5021	0.2221	1221.35	1221.3927	3	561.0	70.0%	2	K.GLWGPVHELGR.N	2 2 2
step05.16008.16010.2	3.2725	0.3291	1137.009	1137.3589	1	848.2	83.3%	1	R.ANIALWPPVR.E	2 2 2
step05.19940.19940.2	4.0627	0.4502	1818.608	1819.0967	1	1178.7	78.6%	4	K.NLAPFFEAWAWPIQK.E	2 2 2
step02.16932.16932.2	2.7237	0.3987	1507.888	1507.7118	1	717.0	66.7%	2	K.EVATSLAYLPEWK.E	2 2 2

Similarities: gi|310115369|ref|XP_0(4:0)
gi|7662276|ref|NP_055(4:0)

gi|10801345|ref|NP_03

25.2%

218

25060

4.9

eukaryotic translation initiation factor 3 subunit K [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12282.12282.2	2.5894	0.3874	1319.852	1320.4331	1	784.7	85.0%	1	R.YNPENLATLER.Y	2
*	step02.12233.12234.1	2.0478	0.1674	1321.082	1320.4331	1	227.2	60.0%	1	R.YNPENLATLER.Y	1
*	step02.16424.16424.2	4.9417	0.4428	1563.571	1563.7338	1	2513.3	84.6%	2	K.ENAYDLEANLAVLK.L	2
*	step05.15092.15092.2	4.0302	0.4848	1631.472	1631.8479	1	686.8	73.1%	2	K.ALTNLPHTDFTLCK.C	2
*	step02.20571.20571.2	4.9384	0.5441	1819.68	1820.0999	1	1457.1	73.3%	1	R.WLLAEMLGDLSDSQLK.V	2

U	gi\|13489083\|ref\|NP_06	16	26	25.1%	793	88952	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 5 [Homo sapiens]
U	gi\|255918200\|ref\|NP_0	16	26	25.2%	791	88909	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 3 [Homo sapiens]
U	gi\|255918198\|ref\|NP_0	16	26	23.6%	844	94445	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 2 [Homo sapiens]
U	gi\|255918196\|ref\|NP_0	16	26	23.0%	867	96957	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 1 [Homo sapiens]
U	gi\|255918194\|ref\|NP_0	16	26	22.8%	873	97669	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 6 [Homo sapiens]
U	gi\|255918192\|ref\|NP_0	16	26	22.6%	879	98485	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.16081.16081.2	3.5638	0.3683	1770.561	1770.924	1	1499.5	78.6%	2	K.FDLHSSSHIDTLLER.E	2
	step06.19818.19818.2	2.3839	0.1786	1004.433	1004.29065	4	732.2	92.9%	2	R.KLIEFLLK.A	2
	step03.16960.16960.2	2.5933	0.2062	876.403	876.11774	1	408.2	91.7%	2	K.LIEFLLK.A	2
	step02.19268.19268.2	4.4463	0.3883	2608.866	2608.8503	1	680.9	47.6%	1	K.AECLEDLVSFIIEEPPQDMDEK.I	2
	step02.18966.18966.3	3.8572	0.2924	2624.886	2624.8499	1	815.8	32.1%	1	K.AECLEDLVSFIIEEPPQDM*DEK.I	3
	step04.16186.16188.2	3.5174	0.3413	1217.625	1217.4391	1	1018.1	83.3%	1	R.KPEQIVDFLK.K	2
2	step06.19603.19603.2	2.9927	0.4808	1456.634	1456.7362	1	973.6	83.3%	1	K.HIGTSAIM*DLLLR.L	2 2
	step04.14047.14047.2	2.3514	0.1547	1324.466	1324.5446	1	563.3	70.0%	1	R.LLTCIEPPQPR.Q	2
	step02.17409.17409.2	2.6028	0.2402	2384.774	2385.677	1	518.6	42.5%	1	R.DQMLQIQNSTEPDPLLATLEK.Q	2
	step05.16590.16590.2	3.264	0.2429	1480.4	1480.7328	1	766.0	66.7%	2	R.LGSFHELLLEPPK.N	2
	step02.13922.13922.2	2.9574	0.4128	1263.395	1263.445	1	1182.7	88.9%	2	R.ILEAWEMNEK.K	2
	step05.15173.15173.2	3.5933	0.3502	1269.709	1268.4875	1	817.6	72.7%	4	K.GPNSALVQQLIK.D	2
	step03.14412.14412.2	2.9913	0.4923	1816.587	1816.943	1	943.3	67.9%	2	R.WETFCTSSLGETNKR.N	2
	step02.8200.8200.2	3.3071	0.321	1599.396	1599.6399	1	1266.3	73.1%	1	K.FADQDDIGNVSFDR.V	2
	step01.9003.9003.2	3.7384	0.3236	2222.371	2221.1274	2	382.6	45.1%	1	R.IQQFDDGGS#DEEDIWEEK.H	2
	step02.17826.17826.2	4.0513	0.5264	1865.651	1865.9741	1	1681.3	68.8%	2	K.ETGWASFSEFTSSLSTK.D	2

Similarities: gi|37537701|ref|NP_05(1:15)

gi|68800138|ref|NP_00

25.1%

167

19715

9.1

splicing factor U2AF 35 kDa subunit isoform c [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.16014.16014.2	4.4803	0.5074	2754.872	2755.0037	1	840.4	41.3%	2	K.YGEVEEMNVCDNLGDHLVGNVYVK.F	2 2 2
step02.16310.16310.3	5.9207	0.477	2755.118	2755.0037	1	1795.8	43.5%	2	K.YGEVEEMNVCDNLGDHLVGNVYVK.F	3 3 3
step02.15197.15197.3	6.1967	0.5323	2770.958	2771.003	1	1915.8	42.4%	2	K.YGEVEEM*NVCDNLGDHLVGNVYVK.F	3 3 3
step02.15240.15240.2	4.4807	0.5164	2770.997	2771.003	1	346.2	39.1%	2	K.YGEVEEM*NVCDNLGDHLVGNVYVK.F	2 2 2
step05.16586.16586.3	4.853	0.5002	2116.039	2115.3357	1	935.3	44.1%	2	R.WFNGQPIHAELSPVTDFR.E	3 3 3 3
step05.16565.16565.2	5.6525	0.5368	2116.622	2115.3357	1	1393.7	70.6%	3	R.WFNGQPIHAELSPVTDFR.E	2 2 2 2

Similarities: gi|5803207|ref|NP_006(6:0)
gi|68800128|ref|NP_00(6:0)
gi|310110750|ref|XP_0(2:4)

gi|50592992|ref|NP_00

25.0%

380

43658

6.5

nitrogen permease regulator 2-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19798.19798.2	4.9771	0.5514	1922.989	1923.1935	1	2186.2	80.0%	2	R.IECIFFSEFHPTLGPK.I	2
*	step06.19398.19398.2	5.1502	0.6229	2279.734	2279.6174	1	940.9	61.1%	7	R.ELFDTVQVYIITKPELQNK.L	2
*	step04.17830.17830.2	4.7506	0.565	1782.221	1782.0265	1	2036.7	76.7%	2	R.NALLFNLGFVCDAQAK.T	2
*	step04.18711.18711.2	2.2815	0.1443	2125.841	2126.5493	1	224.2	41.7%	1	K.QKLVPIMTILLEELNASGR.C	2
*	step05.735.735.2	3.8748	0.3498	1869.928	1870.2467	1	1185.1	59.4%	1	K.LVPIMTILLEELNASGR.C	2
*	step04.575.575.3	3.9516	0.5258	1870.744	1870.2467	1	976.5	50.0%	2	K.LVPIMTILLEELNASGR.C	3
*	step04.18962.18962.3	4.1614	0.3993	1886.828	1886.2461	1	2042.8	51.6%	2	K.LVPIM*TILLEELNASGR.C	3
*	step03.18674.18674.2	5.0344	0.4983	1887.03	1886.2461	1	1104.7	68.8%	8	K.LVPIM*TILLEELNASGR.C	2
*	step04.18890.18890.3	5.5843	0.552	3077.723	3078.336	1	1365.3	37.5%	4	K.DKEDFFNSQWDLTTQQILPYIDGFR.H	3

gi|34098946|ref|NP_00

25.0%

324

35924

9.9

nuclease-sensitive element-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.12747.12747.2	3.7689	0.366	1745.628	1745.9144	1	1044.5	75.0%	3	R.NDTKEDVFVHQTAIK.K	2 2 2
	step02.13216.13216.2	4.4724	0.4672	1796.735	1796.8671	1	1641.8	75.0%	4	R.SVGDGETVEFDVVEGEK.G	2 2 2
*	step03.9153.9153.2	3.3788	0.4351	1697.245	1696.8434	1	1809.9	66.7%	1	K.GAEAANVTGPGGVPVQGSK.Y	2
*	step05.12969.12969.3	4.8715	0.4022	3225.632	3225.459	1	620.3	29.3%	1	R.RPQYSNPPVQGEVMEGADNQGAGEQGRPVR.Q	3

Similarities: gi|224586882|ref|NP_0(2:2)
gi|156415990|ref|NP_0(2:2)

gi|11968182|ref|NP_07

25.0%

152

17719

11.0

40S ribosomal protein S18 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16004.16004.2	3.0273	0.3823	948.043	948.18396	1	846.4	93.8%	3	K.IAFAITAIK.G	2
*	step04.13518.13518.2	2.9412	0.3835	1072.495	1072.307	1	1014.9	93.8%	2	R.VITIMQNPR.Q	2
*	step05.11061.11061.2	2.8244	0.3698	1088.373	1088.3064	1	1033.1	93.8%	6	R.VITIM*QNPR.Q	2
*	step03.16334.16334.1	1.8421	0.2576	1060.764	1061.2177	4	182.4	57.1%	1	K.IPDWFLNR.Q	1
*	step03.16327.16327.2	2.8094	0.4162	1061.384	1061.2177	1	571.7	92.9%	2	K.IPDWFLNR.Q	2
*	step02.8804.8804.1	2.598	0.3731	1321.604	1322.449	1	355.0	63.6%	2	K.YSQVLANGLDNK.L	1
*	step02.8037.8037.2	3.5669	0.4707	1323.331	1322.449	1	1479.4	81.8%	5	K.YSQVLANGLDNK.L	2

U	gi\|226246671\|ref\|NP_0	6	25	24.6%	142	16006	9.3	40S ribosomal protein S20 isoform 1 [Homo sapiens]
U	gi\|4506697\|ref\|NP_001	6	25	29.4%	119	13373	9.9	40S ribosomal protein S20 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.11689.11689.2	2.7509	0.2371	1651.189	1649.83	1	555.1	53.6%	4	K.DTGKTPVEPEVAIHR.I	2
step04.12664.12664.2	3.2816	0.2891	1248.347	1248.4132	1	1153.5	90.0%	12	K.TPVEPEVAIHR.I	2
step04.13245.13245.3	4.0872	0.1946	1248.998	1248.4132	1	2133.0	67.5%	2	K.TPVEPEVAIHR.I	3
step02.7994.7994.2	2.4757	0.2397	847.269	846.98834	1	514.3	91.7%	2	K.VCADLIR.G	2
step06.18187.18187.2	3.0637	0.4298	1507.247	1507.7598	1	721.2	62.5%	2	K.RLIDLHSPSEIVK.Q	2
step03.14521.14521.2	3.377	0.412	1351.606	1351.5734	1	740.4	72.7%	3	R.LIDLHSPSEIVK.Q	2

gi|222144293|ref|NP_0

24.5%

538

60222

5.0

importin subunit alpha-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14334.14334.2	3.8464	0.4655	1890.711	1891.1147	1	526.8	47.1%	2	K.EPNPPIDEVISTPGVVAR.F	2
*	step03.386.386.3	4.3219	0.3687	2148.796	2149.5083	1	841.8	41.2%	2	R.DYVLDCNILPPLLQLFSK.Q	3
*	step03.317.317.2	4.5856	0.417	2149.976	2149.5083	1	633.7	61.8%	3	R.DYVLDCNILPPLLQLFSK.Q	2
	step04.16094.16094.2	3.287	0.4921	1304.121	1304.4735	1	1302.1	85.0%	2	R.NAVWALSNLCR.G	2 2 2
	step03.15580.15580.1	2.3615	0.2584	1375.5	1375.6184	1	318.8	55.0%	2	R.LVELLMHNDYK.V	1 1 1
	step03.14578.14578.2	2.5889	0.2405	1391.62	1391.6178	1	833.2	75.0%	1	R.LVELLM*HNDYK.V	2 2 2
	step02.13990.13990.2	3.6589	0.3248	1593.477	1593.7167	1	1733.8	80.8%	2	K.EACWTISNITAGNR.A	2 2
*	step06.22374.22374.2	3.492	0.503	2773.836	2774.2073	1	696.0	43.8%	1	R.AQIQTVIDANIFPALISILQTAEFR.T	2
*	step04.20059.20059.2	5.2229	0.5661	2469.139	2468.922	1	943.8	55.0%	4	K.YLVELGCIKPLCDLLTVMDSK.I	2
*	step03.19786.19786.3	5.2764	0.5512	2469.454	2468.922	1	1294.7	40.0%	3	K.YLVELGCIKPLCDLLTVMDSK.I	3
*	step03.17905.17905.2	4.3306	0.6123	2485.186	2484.9216	1	389.1	45.0%	2	K.YLVELGCIKPLCDLLTVM*DSK.I	2
	step04.17814.17814.2	4.9981	0.4234	1552.822	1552.8436	1	2598.8	84.6%	3	K.IVQVALNGLENILR.L	2 2 2

Similarities: gi|6912478|ref|NP_036(5:7)
gi|39812229|ref|NP_00(4:8)

gi|5730023|ref|NP_006

24.4%

463

51157

5.6

ruvB-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13395.13395.2	2.7692	0.292	1074.772	1075.3076	1	891.3	77.8%	2	R.AAGVVLEM*IR.E	2
*	step04.11683.11683.2	3.0623	0.4205	1112.329	1112.3044	1	1264.8	81.8%	2	R.AVLIAGQPGTGK.T	2
*	step02.14564.14564.2	3.164	0.3317	1502.403	1502.6691	1	785.6	79.2%	2	K.TTEMETIYDLGTK.M	2
*	step02.8400.8400.2	2.6084	0.4059	1518.4	1518.6685	1	1078.6	83.3%	1	K.TTEM*ETIYDLGTK.M	2
*	step04.15688.15688.2	3.629	0.4315	1948.687	1948.1694	1	734.5	65.6%	2	K.EVVHTVSLHEIDVINSR.T	2
*	step04.16358.16358.2	4.4161	0.5408	1870.672	1870.0555	1	1504.4	75.0%	4	R.GTSYQSPHGIPIDLLDR.L	2
*	step03.14570.14570.2	2.7644	0.1862	1695.614	1695.9353	1	779.9	64.3%	2	R.LLIVSTTPYSEKDTK.Q	2
*	step02.16016.16016.2	3.253	0.3968	1229.125	1229.3635	1	974.1	83.3%	2	R.VYSLFLDESR.S	2
*	step02.17418.17418.2	4.1385	0.3899	2239.317	2239.401	1	1366.5	61.1%	2	K.EYQDAFLFNELKGETMDTS.-	2
*	step02.16850.16850.2	4.2749	0.446	2254.714	2255.4004	1	1385.5	61.1%	2	K.EYQDAFLFNELKGETM*DTS.-	2

gi|4506753|ref|NP_003

24.3%

456

50228

6.4

ruvB-like 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8764.8764.2	2.4126	0.3836	1059.651	1060.1832	1	794.2	75.0%	2	K.GLGLDESGLAK.Q	2
*	step02.16558.16558.2	2.6075	0.2166	1231.584	1231.4575	2	870.9	80.0%	1	R.EACGVIVELIK.S	2
*	step05.13282.13282.2	3.3249	0.4056	1081.431	1081.2904	1	699.4	68.2%	2	R.AVLLAGPPGTGK.T	2
*	step04.17397.17397.2	3.6947	0.5012	1386.538	1386.6193	1	1706.9	80.8%	4	K.TALALAIAQELGSK.V	2
*	step02.16029.16029.2	2.3139	0.2242	1277.082	1277.4481	1	606.9	85.0%	2	K.LDPSIFESLQK.E	2
*	step03.17098.17098.2	5.4484	0.558	1689.731	1688.9492	1	1329.9	80.0%	2	R.ALESSIAPIVIFASNR.G	2
*	step03.15879.15879.2	4.656	0.5158	2325.804	2325.5183	1	1014.3	54.8%	2	R.AQTEGINISEEALNHLGEIGTK.T	2
*	step05.17128.17128.2	4.093	0.4448	1532.6	1531.8212	1	803.0	65.4%	3	R.YSVQLLTPANLLAK.I	2

gi|150170706|ref|NP_0

24.3%

185

21252

9.1

anaphase-promoting complex subunit 10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13694.13694.2	2.6743	0.1882	2142.025	2142.2983	5	215.8	41.2%	2	K.TLCIYADYKSDESYTPSK.I	2
*	step05.13404.13404.2	3.1586	0.1556	1441.627	1441.5768	1	875.8	77.3%	3	R.VGNNFHNLQEIR.Q	2
*	step04.15139.15139.2	3.4264	0.3842	1723.83	1723.9504	1	1232.9	78.6%	2	K.IYTPVEESSIGKFPR.C	2

U	gi\|224451080\|ref\|NP_0	24	46	24.2%	1117	124602	5.7	cytospin-A [Homo sapiens]
U	gi\|224451082\|ref\|NP_0	24	46	24.2%	1117	124602	5.7	cytospin-A [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.15730.15730.2	3.6015	0.3521	1572.38	1572.812	1	697.3	63.3%	2	K.KLPSAGQGANDMALAK.R	2
step06.13796.13798.2	2.716	0.3422	1588.419	1588.8115	1	555.7	66.7%	1	K.KLPSAGQGANDM*ALAK.R	2
step05.14908.14908.2	3.1006	0.3837	1001.62	1001.2452	1	700.4	93.8%	2	K.VKDLLTLAK.T	2
step03.15454.15454.2	3.8014	0.4105	1248.357	1248.4132	1	1311.4	90.0%	2	R.LNALGFSLEQR.L	2
step03.13369.13369.2	5.4553	0.577	1852.136	1852.9752	1	2127.2	85.3%	2	R.KGSSGNASEVSVACLTER.I	2
step05.16560.16560.2	4.3672	0.4989	2320.957	2321.6328	1	1776.7	66.7%	1	K.VILMESLCQQSDKLEHFSR.Q	2
step04.16694.16694.3	4.1889	0.4986	2321.291	2321.6328	1	1531.1	51.4%	2	K.VILMESLCQQSDKLEHFSR.Q	3
step03.15896.15896.2	2.5323	0.311	2013.619	2013.1936	1	765.3	56.2%	1	R.SLLDEHHISYVIDEDVK.S	2
step05.14654.14654.2	4.6566	0.4913	1708.646	1708.9404	1	781.8	71.4%	2	R.EQLLGVQQHLSNTLK.M	2
step02.14345.14345.2	5.2872	0.4418	1907.609	1907.1594	1	1821.7	75.0%	3	K.MAEQDNKEAQEMIGALK.E	2
step02.7686.7686.2	3.8349	0.3474	1923.123	1923.1588	1	976.4	78.1%	1	K.MAEQDNKEAQEM*IGALK.E	2
step02.13563.13563.2	2.3204	0.3239	1180.495	1180.3324	1	893.1	80.0%	1	K.AALAATLEEYK.A	2
step03.16753.16753.2	4.92	0.4693	2690.153	2689.9163	1	1501.7	52.2%	2	K.VAELYSIHNSGDKSDIQDLLESVR.L	2
step02.17304.17304.2	3.655	0.3895	1275.55	1275.3906	1	1423.9	80.0%	1	K.SDIQDLLESVR.L	2
step03.13676.13676.2	2.3695	0.2112	1462.577	1462.6943	2	427.4	54.5%	1	K.KQIEDLNMTLEK.L	2
step03.16809.16809.2	6.1135	0.5178	2237.556	2236.4019	1	2068.3	70.6%	3	R.SDMKETIFELEDEVEQHR.A	2
step03.16668.16668.2	5.7372	0.565	1725.705	1724.9366	1	3259.9	85.7%	2	K.LHDNLIISDLENTVK.K	2
step04.16868.16868.2	5.5134	0.5253	1852.74	1853.1096	1	2385.6	80.0%	2	K.LHDNLIISDLENTVKK.L	2
step02.12196.12196.2	3.0697	0.4944	1259.414	1259.4164	1	1233.6	83.3%	2	R.VYNYMNAVER.D	2
step03.13152.13152.2	4.5443	0.518	1799.647	1799.9653	1	1016.4	67.6%	2	K.SFDSASQVPNPAAAAIPR.T	2
step05.11306.11306.2	2.6857	0.2662	957.523	958.15753	1	868.7	81.2%	2	R.TPLSPSPMK.T	2
step05.11325.11325.2	3.4025	0.3813	1226.268	1226.431	1	1402.8	81.8%	6	K.TPPAAAVSPMQR.H	2
step05.9672.9672.2	3.1019	0.444	1242.464	1242.4304	1	1004.5	68.2%	2	K.TPPAAAVSPM*QR.H	2
step06.23357.23357.2	2.6307	0.0889	2006.51	2007.1937	1	510.7	50.0%	1	R.EERKDPLSALAREYGGSK.R	2

gi|38455427|ref|NP_00

24.1%

539

57924

7.8

T-complex protein 1 subunit delta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12802.12802.2	3.696	0.4694	2107.425	2107.3718	1	481.0	47.4%	1	K.M*IQDGKGDVTITNDGATILK.Q	2
*	step06.17873.17873.2	2.6386	0.4743	1458.848	1457.656	1	361.2	58.3%	6	K.GIHPTIISESFQK.A	2
*	step02.8458.8458.2	2.4786	0.3966	1358.44	1358.5228	1	575.7	70.8%	1	K.VIDPATATSVDLR.D	2
*	step02.17504.17504.2	2.3616	0.2442	2060.427	2061.313	4	164.4	38.9%	1	K.LGGTIDDCELVEGLVLTQK.V	2
*	step04.13992.13992.2	3.6547	0.3141	1146.663	1146.3558	1	1198.9	83.3%	2	K.TGCNVLLIQK.S	2
*2	step05.14711.14711.2	2.8361	0.3327	1185.207	1184.3641	1	705.2	88.9%	3	R.SIHDALCVIR.C	2 2
*	step03.16269.16269.2	4.1712	0.4688	1552.387	1551.8125	1	1178.3	76.7%	1	R.ALIAGGGAPEIELALR.L	2
*	step02.19192.19192.3	5.176	0.4791	3033.29	3032.415	1	1560.8	35.7%	2	R.AFADAMEVIPSTLAENAGLNPISTVTELR.N	3
*	step02.18249.18249.3	4.1597	0.3443	3049.286	3048.4146	10	401.4	22.3%	1	R.AFADAM*EVIPSTLAENAGLNPISTVTELR.N	3

Similarities: gi|24307939|ref|NP_03(1:8)

U	gi\|58761496\|ref\|NP_00	8	12	24.1%	320	34225	9.0	heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
U	gi\|58761498\|ref\|NP_00	8	12	24.1%	320	34225	9.0	heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.16737.16737.2	3.4821	0.4274	1913.685	1914.1483	1	1536.8	68.8%	1	R.KLFIGGLSFETTDESLR.S	2 2
	step02.18011.18011.2	5.0958	0.5006	1785.853	1785.9753	1	2439.5	83.3%	2	K.LFIGGLSFETTDESLR.S	2 2
3	step04.14000.14000.1	1.8094	0.1221	733.649	733.9214	2	519.6	75.0%	1	K.IFVGGIK.E	1 1 1 1 1
2	step05.17153.17153.2	4.5691	0.5462	1881.458	1881.0815	1	1469.7	73.3%	3	K.IFVGGIKEDTEEHHLR.D	2 2 2
	step02.16427.16427.2	3.0017	0.3534	1219.496	1219.4336	1	1849.6	94.4%	2	K.IEVIEIMTDR.G	2 2
	step02.16665.16665.2	4.6772	0.5212	1700.652	1700.7859	1	1510.8	78.6%	1	R.GFAFVTFDDHDSVDK.I	2 2
	step03.16545.16545.2	2.7617	0.3902	2282.013	2282.5366	1	212.4	36.8%	1	R.GFAFVTFDDHDSVDKIVIQK.Y	2 2
	step03.11806.11806.2	2.4877	0.1834	1377.525	1376.4552	1	657.7	61.5%	1	R.SSGPYGGGGQYFAK.P	2 2

Similarities: gi|14043072|ref|NP_11(2:6)
gi|14043070|ref|NP_11(8:0)
gi|5803036|ref|NP_006(1:7)
gi|34740329|ref|NP_91(1:7)

gi|213385323|ref|NP_0

23.8%

643

72526

6.7

anaphase-promoting complex subunit 5 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.17376.17376.2	3.1948	0.3039	992.772	992.19684	1	1375.2	93.8%	2	K.TSVVGLFLR.H	2 2
step04.16174.16174.2	2.4942	0.3002	955.806	956.1198	1	519.3	85.7%	2	K.LSFSQVFK.L	2 2
step05.17402.17402.2	5.8776	0.6056	2184.09	2185.3828	1	1783.5	70.6%	3	K.FNPDFAEAHYLSYLNNLR.V	2 2
step06.20038.20038.3	3.9301	0.4911	2052.545	2052.2346	1	1025.0	46.9%	2	R.VQDVFSSTHSLLHYFDR.L	3 3
step06.18758.18758.2	3.2967	0.5023	1373.478	1373.579	1	984.0	77.3%	2	R.YAALNLAALHCR.F	2 2
step04.16459.16459.2	6.1511	0.4214	1875.575	1875.077	1	2518.8	83.3%	1	R.FGHYQQAELALQEAIR.I	2 2
step04.17064.17064.2	4.697	0.4836	1685.65	1685.9688	1	1582.7	76.9%	2	K.LMDALKDSDLLHWK.H	2 2
step04.16335.16335.2	2.2477	0.2123	1701.886	1701.9681	1	754.1	69.2%	1	K.LM*DALKDSDLLHWK.H	2 2
step03.16558.16558.2	3.5644	0.4315	1554.76	1554.77	1	801.2	73.1%	2	K.HSLSELIDISIAQK.T	2 2
step06.20514.20514.2	7.2852	0.6891	2393.897	2393.6804	1	4447.7	81.0%	8	K.YHLADSLVTGITALNSIEGVYR.K	2 2
step04.13114.13114.2	2.4558	0.1655	795.641	796.01294	1	800.1	91.7%	1	R.AM*FLVAK.C	2 2
step03.15615.15615.2	4.0501	0.4669	1714.138	1714.8987	1	1147.9	70.0%	2	K.KAEALEAAIENLNEAK.N	2 2
step03.15638.15638.3	4.2539	0.2802	1714.852	1714.8987	2	1666.7	48.3%	1	K.KAEALEAAIENLNEAK.N	3 3

Similarities: gi|20127553|ref|NP_05(13:0)

U	gi\|17298690\|ref\|NP_05	8	11	23.8%	542	58172	5.3	poly(U)-binding-splicing factor PUF60 isoform b [Homo sapiens]
U	gi\|209862867\|ref\|NP_0	8	11	25.0%	516	55729	5.3	poly(U)-binding-splicing factor PUF60 isoform c [Homo sapiens]
U	gi\|17978512\|ref\|NP_51	8	11	23.1%	559	59876	5.3	poly(U)-binding-splicing factor PUF60 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.14726.14726.2	2.2521	0.3367	1763.044	1763.0281	1	376.9	60.0%	1	K.LGLPPLTPEQQEALQK.A	2
step02.17493.17493.2	3.6454	0.3845	1877.646	1878.0713	1	1175.6	60.0%	1	R.VYVGSIYYELGEDTIR.Q	2
step04.179.179.3	4.684	0.4926	3059.186	3058.4778	1	1431.7	35.2%	1	K.GFAFVEYEVPEAAQLALEQMNSVMLGGR.N	3
step05.16136.16136.2	5.6749	0.556	2363.027	2363.616	1	852.0	64.3%	2	K.VGRPSNIGQAQPIIDQLAEEAR.A	2
step05.16140.16140.3	3.5296	0.2356	2363.426	2363.616	2	1246.5	35.7%	1	K.VGRPSNIGQAQPIIDQLAEEAR.A	3
step02.13139.13139.2	3.4683	0.3279	1820.21	1818.9622	1	861.5	56.7%	2	R.IYVASVHQDLSDDDIK.S	2
step02.13292.13292.2	2.6357	0.4175	1106.23	1106.2089	1	823.0	81.2%	1	K.GYGFIEYEK.A	2
step02.18264.18264.2	5.5562	0.5639	2388.772	2388.5996	1	1709.8	61.9%	2	K.AQSSQDAVSSMNLFDLGGQYLR.V	2

U	gi\|301171345\|ref\|NP_0	6	18	23.8%	383	42954	5.1	tubulin alpha-8 chain isoform 2 [Homo sapiens]
U	gi\|9507215\|ref\|NP_061	6	18	20.3%	449	50094	5.1	tubulin alpha-8 chain isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13572.13572.2	2.6821	0.1924	1719.032	1719.8802	2	258.9	53.8%	2	R.NLDIERPTYTNLNR.L	2 2 2 2 2 2
step05.19497.19497.2	4.5081	0.5039	1489.618	1488.7548	1	1812.5	73.1%	6	R.LISQIVSSITASLR.F	2 2 2 2
step02.18275.18275.2	6.4085	0.5679	2411.873	2410.6665	1	1170.6	60.0%	5	R.FDGALNVDLTEFQTNLVPYPR.I	2 2 2 2 2 2
step04.14516.14516.2	3.7532	0.4283	1825.674	1826.0858	1	822.8	67.6%	2	K.VGINYQPPTVVPGGDLAK.V	2 2 2 2 2 2
step04.16965.16965.2	4.1928	0.3542	1866.329	1866.1254	1	2053.3	71.9%	1	R.AVCMLSNTTAIAEAWAR.L	2 2 2 2 2
step02.13732.13732.2	2.4505	0.279	888.294	888.06573	2	792.2	100.0%	2	K.FDLMYAK.R	2 2 2 2 2 2 2

gi|4759160|ref|NP_004

23.8%

126

13916

10.3

small nuclear ribonucleoprotein Sm D3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13801.13801.2	5.7909	0.5357	2415.582	2415.595	1	2007.9	65.0%	1	K.VLHEAEGHIVTCETNTGEVYR.G	2
*	step04.18142.18142.1	1.845	0.2182	1089.645	1090.4038	1	800.6	75.0%	1	R.FLILPDMLK.N	1
*	step04.18132.18132.2	2.6589	0.1454	1090.533	1090.4038	3	774.4	81.2%	2	R.FLILPDMLK.N	2

gi|4506679|ref|NP_001

23.6%

165

18898

10.2

40S ribosomal protein S10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18456.18456.2	3.2823	0.3937	1110.468	1110.3701	1	1012.0	87.5%	5	R.IAIYELLFK.E	2
*	step06.19090.19090.2	2.6838	0.2956	1734.754	1735.0195	1	355.5	57.1%	5	R.DYLHLPPEIVPATLR.R	2
*	step03.13623.13623.2	4.8896	0.53	1570.571	1570.6881	1	2711.6	89.3%	2	K.KAEAGAGSATEFQFR.G	2
*	step02.9406.9406.2	3.1935	0.3	1442.298	1442.5151	1	711.2	69.2%	1	K.AEAGAGSATEFQFR.G	2

gi|13904870|ref|NP_00

23.5%

204

22876

9.7

40S ribosomal protein S5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17430.17430.2	4.961	0.5598	2324.192	2324.5286	1	1649.2	63.2%	3	K.WSTDDVQINDISLQDYIAVK.E	2
*	step05.16454.16454.2	5.1781	0.5069	1502.591	1502.7366	1	1756.8	83.3%	1	R.VNQAIWLLCTGAR.E	2
*	step02.18935.18935.1	2.295	0.368	1632.89	1632.831	1	594.2	57.1%	1	K.TIAECLADELINAAK.G	1
*	step02.18920.18920.3	5.1728	0.4314	1633.47	1632.831	1	3249.0	64.3%	2	K.TIAECLADELINAAK.G	3
*	step02.18899.18899.2	5.2887	0.4512	1633.695	1632.831	1	2737.5	78.6%	2	K.TIAECLADELINAAK.G	2

gi|4557703|ref|NP_000

23.4%

645

65865

8.0

keratin 2a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.10382.10382.2	4.154	0.3914	1256.297	1255.3195	1	1453.8	73.1%	2	R.GFSSGSAVVSGGSR.R	2 2
step05.16068.16068.2	2.5453	0.2857	1840.315	1839.9895	1	577.9	42.9%	1	K.SISISVAGGGGGFGAAGGFGGR.G	2 2
step03.12042.12042.2	4.6013	0.1195	1477.65	1476.6593	1	1995.4	90.9%	7	R.FLEQQNQVLQTK.W	2 2 2
step02.8726.8726.2	3.35	0.406	1038.269	1038.1361	1	831.4	93.8%	2	R.YLDGLTAER.T	2 2
step02.15359.15359.2	4.069	0.5157	2256.704	2257.421	1	931.4	55.6%	2	R.TSQNSELNNMQDLVEDYKK.K	2 2
step02.15360.15360.3	3.6971	0.3375	2257.241	2257.421	6	512.3	34.7%	1	R.TSQNSELNNMQDLVEDYKK.K	3 3
step03.12480.12480.2	3.435	0.2047	1337.405	1337.5035	4	714.6	68.2%	2	R.TAAENDFVTLKK.D	2 2
step02.18021.18021.2	3.8129	0.2799	1461.563	1461.6846	1	1547.8	86.4%	2	K.VDLLNQEIEFLK.V	2 2
step02.18066.18066.1	2.2392	0.09	1329.837	1330.5093	1	555.3	72.7%	1	R.NLDLDSIIAEVK.A	1 1 1 1 1 1 1 1
step02.8338.8338.1	2.1387	0.2167	973.708	974.0935	1	314.1	78.6%	2	K.IEISELNR.V	1 1 1
step02.8330.8330.2	3.0095	0.1861	974.406	974.0935	1	681.6	92.9%	2	K.IEISELNR.V	2 2 2
step02.7820.7820.2	3.1355	0.253	1330.566	1330.3864	1	1521.1	81.8%	1	K.NVQDAIADAEQR.G	2 2
step03.15588.15588.2	5.1831	0.3669	1615.605	1614.7823	1	1871.4	84.6%	3	R.NKLNDLEEALQQAK.E	2 2
step03.17439.17439.2	3.0941	0.3372	2200.362	2199.4075	1	302.4	44.4%	1	R.NKLNDLEEALQQAKEDLAR.L	2 2
step02.14264.14264.2	3.9759	0.3495	1372.51	1372.5063	1	2016.8	81.8%	2	K.LNDLEEALQQAK.E	2 2

U	gi\|46389550\|ref\|NP_99	2	2	23.4%	137	15281	6.0	alpha-endosulfine isoform 1 [Homo sapiens]
U	gi\|4758272\|ref\|NP_004	2	2	26.4%	121	13389	7.2	alpha-endosulfine isoform 3 [Homo sapiens]
U	gi\|46389558\|ref\|NP_99	2	2	27.4%	117	12818	8.7	alpha-endosulfine isoform 6 [Homo sapiens]
U	gi\|46389556\|ref\|NP_99	2	2	24.1%	133	14710	7.8	alpha-endosulfine isoform 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.18942.18942.3	3.6354	0.1247	2973.594	2973.0134	125	547.1	17.9%	1	K.NLVTGDHIPTPQDLPQRKS#S#LVTS#K.L	3
	step03.12016.12016.2	2.5529	0.0802	1536.896	1536.4979	47	118.0	28.8%	1	K.S#S#LVTSKLAGGQVE.-	2

U	gi\|18105045\|ref\|NP_54	2	69	23.4%	128	13906	10.9	histone H2A type 1-H [Homo sapiens]
U	gi\|4504239\|ref\|NP_003	2	69	23.1%	130	14091	10.9	histone H2A type 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14096.14096.2	3.7268	0.4017	1273.559	1273.4178	1	650.5	80.0%	2	R.NDEELNKLLGK.V	2 2 2 2
	step06.22686.22686.2	5.115	0.5264	1932.785	1932.3394	1	1503.2	75.0%	67	K.VTIAQGGVLPNIQAVLLPK.K	2 2 2 2 2

Similarities: gi|106775678|ref|NP_0(2:0)
gi|10645195|ref|NP_06(1:1)
gi|10800130|ref|NP_06(2:0)
gi|10800132|ref|NP_06(2:0)

gi|4506715|ref|NP_001

23.2%

7841

10.7

40S ribosomal protein S28 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16498.16500.2	4.1124	0.511	1770.84	1770.9655	1	845.6	66.7%	1	K.GPVREGDVLTLLESER.E	2
*	step02.17225.17225.1	2.1956	0.4314	1360.84	1361.4803	1	345.6	68.2%	1	R.EGDVLTLLESER.E	1
*	step02.17204.17204.2	3.954	0.395	1361.581	1361.4803	1	1627.1	81.8%	2	R.EGDVLTLLESER.E	2

gi|54112117|ref|NP_03

1304

145830

7.1

splicing factor 3B subunit 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14295.14295.3	4.3582	0.4259	3066.966	3067.1804	1	999.7	33.0%	2	K.KAALDEAQGVGLDSTGYYDQEIYGGSDSR.F	3 3
	step02.13832.13832.2	3.3645	0.5194	2938.408	2939.0076	1	588.3	37.0%	1	K.AALDEAQGVGLDSTGYYDQEIYGGSDSR.F	2 2
*	step06.16776.16776.2	5.0514	0.4139	2011.643	2011.1841	1	1325.9	61.8%	1	K.KLSSWDQAETPGHTPSLR.W	2
*	step04.14296.14296.2	2.262	0.1558	2302.679	2303.5378	1	523.1	40.5%	1	K.SRWDETPASQMGGSTPVLTPGK.T	2
*	step02.8214.8214.2	3.1162	0.2918	2075.154	2076.2732	1	845.9	52.6%	1	R.WDETPASQM*GGSTPVLTPGK.T	2
*	step03.15745.15745.2	5.0781	0.5578	2112.94	2112.3054	1	2124.5	73.5%	2	R.NRPLSDEELDAMFPEGYK.V	2
*	step02.17411.17411.2	3.4109	0.2607	2638.271	2638.8694	1	697.2	47.7%	2	K.SVNDQPSGNLPFLKPDDIQYFDK.L	2
*	step02.13985.13985.2	4.4469	0.4401	2088.213	2088.2588	1	1117.2	64.7%	2	K.LLVDVDESTLSPEEQKER.K	2
*	step03.20514.20514.2	4.4833	0.5606	2816.141	2817.2095	1	667.6	43.8%	1	R.EFGAGPLFNQILPLLMSPTLEDQER.H	2
*	step03.19402.19402.2	4.9931	0.6087	2833.286	2833.2087	1	739.9	47.9%	1	R.EFGAGPLFNQILPLLM*SPTLEDQER.H	2
*	step02.19653.19653.2	5.641	0.5006	2035.891	2035.3685	1	1770.8	81.2%	4	K.ILVVIEPLLIDEDYYAR.V	2
*	step03.17758.17758.2	4.9634	0.3349	1838.256	1838.0518	1	1555.8	70.0%	2	R.SLVEIIEHGLVDEQQK.V	2
*	step03.17776.17776.3	4.3688	0.46	1838.837	1838.0518	1	2382.0	58.3%	2	R.SLVEIIEHGLVDEQQK.V	3
*	step03.18433.18433.2	6.4228	0.5348	2239.936	2238.5474	1	941.6	69.4%	2	K.AIGYLIPLMDAEYANYYTR.E	2
*	step03.16957.16957.2	5.2894	0.489	2255.048	2254.5466	1	918.0	66.7%	2	K.AIGYLIPLM*DAEYANYYTR.E	2
*	step03.16746.16746.2	2.511	0.2372	1092.451	1092.3116	1	655.6	75.0%	2	K.TEILPPFFK.H	2
*	step02.8526.8526.2	2.8319	0.2638	916.103	916.0572	1	1364.3	93.8%	2	K.VGAAEIISR.I	2
*	step03.7938.7938.2	4.2715	0.4465	1723.767	1722.8777	1	1472.3	80.8%	2	R.IVDDLKDEAEQYRK.M	2
*	step06.17786.17786.2	2.2821	0.3391	1298.481	1297.5923	1	429.3	75.0%	1	K.M*TPPIKDLLPR.L	2
*	step04.19260.19260.2	3.385	0.3604	1278.497	1278.5558	1	986.3	88.9%	3	R.ICFELLELLK.A	2
*	step06.17678.17678.2	3.0705	0.291	1342.829	1341.5403	1	1474.7	81.8%	1	R.RATVNTFGYIAK.A	2
*	step03.13875.13875.2	2.4342	0.2568	1310.4	1310.5245	1	524.7	72.7%	1	R.VPELNVQNGVLK.S	2
*	step05.16211.16211.2	4.0696	0.5578	2194.724	2195.4622	1	2127.9	69.4%	1	K.IYNSIYIGSQDALIAHYPR.I	2

Similarities: gi|54112119|ref|NP_00(2:21)

gi|20127479|ref|NP_00

930

103533

6.0

RNA-binding protein 10 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14783.14783.3	5.3357	0.5528	3111.289	3112.1484	1	1220.9	35.0%	2	R.TEQGEEEEEEEDEEEEEKASNIVMLR.M	3
*	step04.13719.13719.1	2.3893	0.3285	903.588	904.1131	2	347.3	71.4%	2	K.ASNIVMLR.M	1
*	step04.13707.13707.2	2.9883	0.3422	904.393	904.1131	1	799.0	92.9%	2	K.ASNIVMLR.M	2
*	step04.12295.12295.2	2.9897	0.3188	919.894	920.1125	2	619.7	85.7%	2	K.ASNIVM*LR.M	2
*	step02.7661.7661.2	2.7181	0.3819	1360.285	1360.519	1	532.9	86.4%	1	R.MLPQAATEDDIR.G	2
	step04.17055.17055.3	4.3246	0.4294	1726.078	1725.8849	1	1847.7	53.6%	2	R.GFAFVEFSHLQDATR.W	3 3
	step06.19393.19393.2	4.9472	0.4288	1726.639	1725.8849	1	2628.9	85.7%	3	R.GFAFVEFSHLQDATR.W	2 2
	step05.15593.15593.2	4.5969	0.4395	1770.429	1770.0059	1	1339.0	82.1%	2	R.WMEANQHSLNILGQK.V	2 2
	step05.15018.15018.2	4.3988	0.4041	1786.579	1786.0052	1	744.6	75.0%	2	R.WM*EANQHSLNILGQK.V	2 2
	step02.10823.10823.2	3.4503	0.2897	1192.416	1192.2968	1	1148.9	87.5%	2	K.INEDWLCNK.C	2 2
	step02.8974.8974.2	2.8481	0.2948	1198.554	1198.3542	1	742.9	75.0%	3	R.LDQQTLPLGGR.E	2 2
	step06.20870.20870.3	3.8557	0.3966	2828.741	2829.182	1	906.2	26.9%	2	R.NLNPHSTMDSILGALAPYAVLSSSNVR.V	3 3
	step06.20050.20050.2	5.5184	0.6354	2844.202	2845.1812	1	1687.7	57.7%	2	R.NLNPHSTM*DSILGALAPYAVLSSSNVR.V	2 2
	step03.12270.12270.2	2.7945	0.4077	1517.528	1516.6372	1	573.7	61.5%	2	R.TYVPALEQSADGHK.E	2 2
	step03.12825.12825.2	5.0835	0.5776	2187.639	2187.352	1	1108.8	62.5%	2	R.TYVPALEQSADGHKETGAPSK.E	2 2
	step04.14292.14292.2	2.6772	0.391	1149.513	1149.2816	1	717.0	83.3%	2	K.NSFQPISSLR.D	2 2
	step02.8372.8372.2	3.4054	0.2615	1440.376	1439.5496	1	967.6	80.8%	2	R.ESATADAGYAILEK.K	2 2
	step03.11902.11904.2	2.3836	0.1099	1384.501	1384.5587	1	697.3	68.2%	1	R.EKYGIPEPPEPK.R	2 2
	step03.13957.13957.2	4.818	0.5803	1856.714	1857.0137	1	1795.1	71.9%	2	R.KYGGISTASVDFEQPTR.D	2 2
	step04.11809.11809.2	2.3008	0.1117	997.029	997.21716	1	1010.8	100.0%	1	R.MLQAMGWK.E	2 2
	step04.13971.13971.2	2.5359	0.2867	1974.931	1975.1022	1	453.9	47.1%	1	R.GSSYGVTSTESYKETLHK.T	2 2

Similarities: gi|23111018|ref|NP_69(16:5)

gi|20070344|ref|NP_07

718

81036

7.3

threonyl-tRNA synthetase, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18732.18732.2	4.7543	0.4001	1504.491	1504.7543	1	2684.7	87.5%	2	R.LGLFEELWAAQVK.R	2
*	step02.15461.15461.2	4.2906	0.4331	1719.921	1719.9219	1	1064.2	67.9%	2	K.IDAVAWNTTPYQLAR.Q	2
*	step04.15252.15252.2	3.0971	0.394	1163.605	1163.3083	1	855.8	88.9%	2	K.LLSNSSSLWR.S	2
*	step03.16273.16273.2	3.5397	0.219	1421.635	1420.6357	1	771.6	75.0%	2	R.VSGISFPTTELLR.V	2
*	step04.18990.18990.2	5.005	0.4671	2487.95	2488.774	1	1444.7	63.2%	4	K.EQELFFFHELSPGSCFFLPR.G	2
*	step04.19003.19003.3	4.3838	0.3543	2488.574	2488.774	1	1277.2	42.1%	3	K.EQELFFFHELSPGSCFFLPR.G	3
*	step04.17622.17622.2	4.4426	0.3947	1166.477	1166.397	1	2027.5	94.4%	4	R.VYNALVAFIR.A	2
*	step04.14190.14190.1	2.0893	0.2294	894.621	895.0348	1	356.3	71.4%	2	K.TPTLFSTK.L	1
*	step04.14192.14192.2	2.3389	0.2167	895.081	895.0348	1	611.6	92.9%	1	K.TPTLFSTK.L	2
*	step05.13887.13887.2	2.242	0.2145	999.685	1000.1359	1	1052.6	81.2%	1	R.LADFGALHR.A	2
*	step05.18318.18318.3	4.6924	0.2064	2801.878	2803.1558	1	938.9	34.4%	1	R.LALSTRPSGFLGDPCLWDQAEQVLK.Q	3
*	step04.18116.18116.2	2.8881	0.2974	2803.1	2803.1558	6	172.6	31.2%	2	R.LALSTRPSGFLGDPCLWDQAEQVLK.Q	2
*	step02.16818.16818.2	3.6986	0.4121	2086.539	2087.1895	1	853.5	58.3%	2	K.EFGEPWDLNSGDGAFYGPK.I	2
*	step03.14416.14416.2	3.5745	0.4896	1205.103	1204.3921	1	1483.9	86.4%	1	R.LLGVLAESCGGK.W	2
*	step02.15204.15204.2	3.3189	0.3365	1413.509	1413.5602	1	738.7	72.7%	1	R.LGEWDLPEAVQR.L	2

gi|5031741|ref|NP_005

412

45746

6.5

dnaJ homolog subfamily A member 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15969.15969.2	2.4551	0.2991	1782.724	1782.9747	1	433.8	50.0%	1	K.EISFAYEVLSNPEKR.E	2
*	step03.20426.20426.3	6.733	0.5634	2994.022	2993.2397	1	2807.1	34.5%	5	R.EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR.S	3
*	step03.18592.18592.3	6.2373	0.5903	3025.089	3025.2385	1	2289.2	34.5%	2	R.EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR.S	3
*	step02.13664.13664.2	3.2516	0.4016	1138.238	1138.2524	1	1394.3	88.9%	2	K.VSLEDLYNGK.T	2
*	step02.18648.18648.2	2.6824	0.4506	2641.05	2641.9546	1	629.4	45.8%	1	R.ITFTGEADQAPGVEPGDIVLLLQEK.E	2
*	step02.18627.18627.3	5.3085	0.481	2642.721	2641.9546	1	1644.0	37.5%	1	R.ITFTGEADQAPGVEPGDIVLLLQEK.E	3
*	step04.19130.19130.2	5.2702	0.6002	1731.557	1731.0211	1	1531.1	71.4%	5	K.IGLVEALCGFQFTFK.H	2

U	gi\|73622130\|ref\|NP_00	2	6	23.0%	152	16932	8.2	BolA-like protein 2 [Homo sapiens]
U	gi\|85797673\|ref\|NP_00	2	6	23.0%	152	16932	8.2	bolA-like protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.7683.7683.2	5.9146	0.6084	1871.679	1870.9524	1	2404.2	83.3%	2	R.DLEAEHVEVEDTTLNR.C	2
	step06.19570.19570.2	4.8972	0.5282	2219.827	2220.5066	1	1608.3	58.3%	4	R.LVNACLAEELPHIHAFEQK.T	2

U	gi\|14165464\|ref\|NP_11	8	15	22.9%	550	59037	9.2	polypyrimidine tract-binding protein 1 isoform b [Homo sapiens]
U	gi\|4506243\|ref\|NP_002	8	15	22.6%	557	59633	9.2	polypyrimidine tract-binding protein 1 isoform a [Homo sapiens]
U	gi\|14165466\|ref\|NP_11	8	15	23.7%	531	57221	9.2	polypyrimidine tract-binding protein 1 isoform c [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.18333.18333.2	5.893	0.6333	2114.04	2113.4824	1	2378.5	71.1%	3	R.KLPIDVTEGEVISLGLPFGK.V	2
2	step04.15950.15950.2	3.1206	0.2802	931.994	932.20636	1	752.2	92.9%	2	K.VTNLLMLK.G	2 2 2
2	step04.15302.15302.2	3.3864	0.2907	948.205	948.20575	1	835.8	92.9%	2	K.VTNLLM*LK.G	2 2 2
	step06.17951.17951.2	2.8323	0.3594	1432.426	1432.6083	1	699.7	81.8%	2	R.GQPIYIQFSNHK.E	2
	step05.16918.16919.2	6.1523	0.5961	2243.971	2244.4517	1	1231.9	63.2%	2	K.NNQFQALLQYADPVSAQHAK.L	2
	step02.14008.14008.2	4.022	0.4237	1898.689	1899.0822	1	1084.8	63.3%	1	K.LSLDGQNIYNACCTLR.I	2
	step06.19690.19690.2	5.6874	0.5841	2275.85	2276.6213	1	1436.9	65.9%	1	R.IAIPGLAGAGNSVLLVSNLNPER.V	2
	step06.19325.19325.3	4.1689	0.2904	2995.886	2996.3196	1	808.4	32.7%	2	K.NFQNIFPPSATLHLSNIPPSVSEEDLK.V	3

Similarities: gi|10863997|ref|NP_06(2:6)
gi|255003738|ref|NP_0(2:6)

U	gi\|83641874\|ref\|NP_11	11	30	22.9%	476	54164	5.6	probable serine carboxypeptidase CPVL precursor [Homo sapiens]
U	gi\|83641876\|ref\|NP_06	11	30	22.9%	476	54164	5.6	probable serine carboxypeptidase CPVL precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.1629.1629.3	4.8511	0.4632	2123.757	2123.4343	1	3363.5	57.8%	2	R.DLYSALIQFFQIFPEYK.N	3
step06.1718.1718.2	4.6999	0.4646	2123.947	2123.4343	1	1171.8	71.9%	10	R.DLYSALIQFFQIFPEYK.N	2
step02.8433.8433.2	3.3547	0.3211	1565.378	1565.622	1	2112.0	80.8%	2	K.NNDFYVTGESYAGK.Y	2
step03.17982.17982.2	4.7304	0.4124	1668.59	1668.8733	1	1503.5	79.2%	4	R.KQNWFEAFEILDK.L	2
step02.8328.8328.2	4.0245	0.4741	1546.766	1545.6655	1	1073.3	86.4%	1	R.CTEPEDQLYYVK.F	2
step03.15432.15432.2	2.2519	0.2752	961.091	961.1396	1	489.1	85.7%	1	K.FLSLPEVR.Q	2
step05.18257.18257.2	3.9401	0.5461	2729.144	2729.1038	1	518.6	45.2%	1	K.YLREDTVQSVKPWLTEIMNNYK.V	2
step03.17365.17365.2	5.291	0.51	2296.975	2296.5852	1	636.0	55.6%	2	R.EDTVQSVKPWLTEIMNNYK.V	2
step02.7624.7624.2	3.2662	0.3948	1097.497	1097.1604	1	1546.5	94.4%	1	K.SDSEVAGYIR.Q	2
step06.17358.17358.2	3.1169	0.3586	1423.59	1423.6013	1	794.1	66.7%	4	R.GGGHILPYDQPLR.A	2
step05.14631.14631.3	3.8798	0.2543	1424.094	1423.6013	1	1443.3	54.2%	2	R.GGGHILPYDQPLR.A	3

U	gi\|16753227\|ref\|NP_00	6	9	22.9%	288	32728	10.6	60S ribosomal protein L6 [Homo sapiens]
U	gi\|67189747\|ref\|NP_00	6	9	22.9%	288	32728	10.6	60S ribosomal protein L6 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.8006.8006.2	2.2889	0.0934	1155.341	1154.1898	37	530.1	54.2%	1	K.VEKPDT#KEK.K	2
step04.11188.11188.1	1.9899	0.199	697.631	697.8491	1	126.1	70.0%	1	R.NPVLVR.G	1
step05.12300.12300.2	2.2655	0.28	1284.613	1285.5149	1	574.2	58.3%	1	K.VLATVTKPVGGDK.N	2
step06.20981.20981.2	3.9837	0.3995	1526.74	1526.8461	1	1177.2	82.1%	2	R.ASITPGTILIILTGR.H	2
step05.15098.15098.2	2.368	0.4337	1159.015	1159.3628	1	288.3	88.9%	1	K.AIPQLQGYLR.S	2
step05.16122.16122.2	2.9898	0.4481	1448.741	1447.6628	1	816.0	70.8%	3	R.SVFALTNGIYPHK.L	2

U	gi\|117190174\|ref\|NP_0	6	12	22.9%	293	32338	5.1	heterogeneous nuclear ribonucleoproteins C1/C2 isoform b [Homo sapiens]
U	gi\|117190254\|ref\|NP_0	6	12	22.9%	293	32338	5.1	heterogeneous nuclear ribonucleoproteins C1/C2 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.16540.16540.2	3.1288	0.3349	1317.604	1317.6018	1	1245.4	77.3%	2	R.VFIGNLNTLVVK.K	2 2 2
step03.15612.15612.2	3.7224	0.4612	1330.411	1330.4728	1	1635.9	85.0%	3	K.GFAFVQYVNER.N	2 2
step02.16576.16576.2	5.5167	0.47	1684.71	1683.9944	1	3027.3	86.7%	2	R.MIAGQVLDINLAAEPK.V	2 2
step02.15358.15358.2	5.6695	0.402	1700.661	1699.9938	1	2141.7	76.7%	2	R.M*IAGQVLDINLAAEPK.V	2 2
step02.15518.15518.2	5.1894	0.575	2118.668	2119.2102	1	1580.7	64.7%	2	R.SAAEM*YGSSFDLDYDFQR.D	2
step02.15180.15180.2	2.4655	0.3503	1160.72	1160.2996	3	528.7	77.8%	1	K.VDSLLENLEK.I	2 2 2

Similarities: gi|117189975|ref|NP_1(5:1)
gi|226052117|ref|NP_0(2:4)

gi|50592994|ref|NP_00

22.9%

105

11737

4.9

thioredoxin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13102.13102.2	3.3371	0.3202	1337.128	1337.4172	1	1438.8	75.0%	2	K.TAFQEALDAAGDK.L	2
*	step02.16020.16020.2	2.6603	0.3285	1259.463	1259.4312	1	1491.6	85.0%	2	K.EKLEATINELV.-	2

U	gi\|33286420\|ref\|NP_87	8	10	22.8%	531	58062	7.7	pyruvate kinase isozymes M1/M2 isoform M1 [Homo sapiens]
U	gi\|33286422\|ref\|NP_87	8	10	22.8%	531	58062	7.7	pyruvate kinase isozymes M1/M2 isoform M1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.8428.8428.2	3.0739	0.3307	1198.373	1198.351	1	1087.9	85.0%	2	R.LDIDSPPITAR.N	2 2 2
step03.16689.16689.2	3.6207	0.3978	2466.796	2466.7715	1	353.8	40.9%	1	R.TATESFASDPILYRPVAVALDTK.G	2 2 2 2
step04.17211.17211.3	5.3865	0.4033	3018.825	3019.3977	1	957.8	36.1%	1	R.TATESFASDPILYRPVAVALDTKGPEIR.T	3 3 3 3
step02.14229.14229.2	3.3914	0.2872	1781.607	1780.914	1	755.1	61.8%	1	K.GADFLVTEVENGGSLGSK.K	2 2 2 2
step02.19893.19893.3	4.6448	0.473	1877.327	1877.11	1	1710.9	46.7%	2	K.FGVEQDVDM*VFASFIR.K	3 3 3 3
step06.17114.17114.2	3.1423	0.3749	1909.868	1910.2828	1	419.0	53.1%	1	R.AGKPVICATQMLESMIK.K	2 2
step03.17558.17558.2	4.6753	0.4861	2559.253	2558.864	1	1123.2	57.1%	1	R.GIFPVLCKDPVQEAWAEDVDLR.V	2 2
step04.11298.11298.2	2.303	0.3777	996.756	996.16583	1	672.0	87.5%	1	R.VNFAM*NVGK.A	2 2

Similarities: gi|310128738|ref|XP_0(4:4)
gi|33286418|ref|NP_00(8:0)
gi|310128730|ref|XP_0(5:3)

U	gi\|219555707\|ref\|NP_0	4	6	22.8%	184	20170	7.0	eukaryotic translation initiation factor 5A-1 isoform A [Homo sapiens]
U	gi\|4503545\|ref\|NP_001	4	6	27.3%	154	16832	5.2	eukaryotic translation initiation factor 5A-1 isoform B [Homo sapiens]
U	gi\|219555712\|ref\|NP_0	4	6	27.3%	154	16832	5.2	eukaryotic translation initiation factor 5A-1 isoform B [Homo sapiens]
U	gi\|219555710\|ref\|NP_0	4	6	27.3%	154	16832	5.2	eukaryotic translation initiation factor 5A-1 isoform B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.14560.14560.1	1.8372	0.2157	776.57	776.9462	3	325.8	75.0%	1	K.NGFVVLK.G	1 1
step06.19769.19769.2	3.5356	0.4589	1299.047	1299.5433	1	1621.8	90.9%	2	K.VHLVGIDIFTGK.K	2 2
step02.18990.18990.2	4.957	0.4903	2582.328	2581.8193	1	1328.6	54.5%	2	R.NDFQLIGIQDGYLSLLQDSGEVR.E	2
step02.19002.19002.3	4.8909	0.2842	2582.878	2581.8193	1	2072.9	39.8%	1	R.NDFQLIGIQDGYLSLLQDSGEVR.E	3

Similarities: gi|153791632|ref|NP_0(2:2)

gi|40018640|ref|NP_07

22.4%

531

60577

9.6

parafibromin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16637.16638.2	3.2545	0.1859	1882.803	1883.0062	1	769.5	50.0%	1	K.DLLGYLNGEASTSASIDR.S	2
*	step03.13806.13806.2	2.8316	0.2476	1084.459	1084.2511	1	410.0	83.3%	2	R.SAPLEIGLQR.S	2
*	step02.15466.15466.2	3.609	0.2911	1650.986	1649.8218	1	1427.4	67.9%	1	R.STIKTDLDDDITALK.Q	2
*	step02.8045.8045.2	3.6145	0.4023	1220.135	1220.3086	1	1532.5	90.0%	2	K.TDLDDDITALK.Q	2
*	step05.18498.18498.1	2.4035	0.2415	1132.716	1133.3652	1	640.6	77.8%	1	K.NIFAILQSVK.A	1
*	step05.18476.18476.2	3.6395	0.3995	1134.6	1133.3652	1	915.2	83.3%	2	K.NIFAILQSVK.A	2
*	step06.13604.13604.2	2.3869	0.138	1901.657	1901.1161	12	202.4	41.2%	1	R.APEQRPAPNAAPVDPTLR.T	2
*	step02.11229.11229.2	3.186	0.3307	1837.716	1837.0474	1	437.0	46.9%	2	K.DQM*QPGGTAISVTVPYR.V	2
*	step06.19432.19432.2	3.8039	0.3986	1576.458	1576.8654	1	1361.8	73.1%	2	R.VVAVFVQGPAWQFK.G	2
*	step03.19323.19323.2	3.7544	0.4351	1898.81	1899.18	1	746.8	65.6%	2	K.GWPWLLPDGSPVDIFAK.I	2

gi|16554607|ref|NP_06

22.4%

201

22999

8.0

28S ribosomal protein S10, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15951.15951.2	5.9253	0.4914	2047.946	2047.3345	1	1771.8	79.4%	2	K.DLTKPVVTISDEPDILYK.R	2
*	step03.12870.12870.2	3.0432	0.2384	1336.502	1336.5188	2	472.2	65.0%	2	K.TQLEQLPEHIK.E	2
*	step03.16354.16354.3	5.3415	0.5147	3240.033	3239.5322	1	951.6	29.8%	2	K.TQLEQLPEHIKEPIWETLSEEKEESKS.-	3

U	gi\|208022622\|ref\|NP_0	3	5	22.4%	156	17965	9.6	ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
U	gi\|4506713\|ref\|NP_002	3	5	22.4%	156	17965	9.6	ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
U	gi\|294459921\|ref\|NP_0	3	5	22.4%	156	17965	9.6	ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.13857.13857.2	3.4705	0.408	1788.654	1788.9744	1	998.5	70.0%	2	K.TITLEVEPSDTIENVK.A	2
step02.14976.14976.2	2.8917	0.5188	2172.592	2173.2927	1	534.2	61.1%	1	R.ECPSDECGAGVFMASHFDR.H	2
step02.12154.12154.2	3.1907	0.3893	2190.379	2189.292	1	408.7	61.1%	2	R.ECPSDECGAGVFM*ASHFDR.H	2

U	gi\|21327708\|ref\|NP_63	7	16	22.3%	391	45374	4.5	nucleosome assembly protein 1-like 1 [Homo sapiens]
U	gi\|4758756\|ref\|NP_004	7	16	22.3%	391	45374	4.5	nucleosome assembly protein 1-like 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16701.16702.2	4.4623	0.459	1860.94	1861.0853	1	999.2	65.6%	3	R.LDGLVETPTGYIESLPR.V	2
step03.16125.16125.2	2.2621	0.1959	1357.936	1357.5781	1	886.9	75.0%	1	K.YAVLYQPLFDK.R	2
step05.16307.16307.2	3.1451	0.4241	1513.484	1513.7644	1	1316.4	81.8%	2	K.YAVLYQPLFDKR.F	2
step05.19989.19990.2	2.7261	0.3158	1337.646	1337.59	1	398.0	75.0%	5	K.GIPEFWLTVFK.N	2
step02.17681.17681.2	4.678	0.3954	2095.785	2096.3474	1	1218.9	55.9%	2	K.NVDLLSDMVQEHDEPILK.H	2
step02.15245.15245.2	4.6884	0.4733	2112.76	2112.347	1	888.0	64.7%	2	K.NVDLLSDM*VQEHDEPILK.H	2
step03.17884.17884.3	4.5194	0.4875	3442.122	3441.766	1	608.4	32.1%	1	K.FSDAGQPM*SFVLEFHFEPNEYFTNEVLTK.T	3

gi|4506625|ref|NP_000

22.3%

148

16561

11.0

60S ribosomal protein L27a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19029.19029.2	5.1184	0.5132	2637.964	2637.9229	1	1316.9	54.8%	2	R.NQSFCPTVNLDKLWTLVSEQTR.V	2
*	step05.19006.19006.3	4.2467	0.3387	2638.062	2637.9229	1	1199.7	36.9%	2	R.NQSFCPTVNLDKLWTLVSEQTR.V	3
*	step03.15295.15295.2	2.9977	0.3457	1233.688	1233.3986	1	611.1	83.3%	2	K.LWTLVSEQTR.V	2
*	step03.14316.14316.2	3.7166	0.489	1112.462	1112.3044	1	827.0	95.0%	1	K.TGAAPIIDVVR.S	2

gi|7705425|ref|NP_057

22.3%

130

14502

9.8

28S ribosomal protein S17, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16771.16771.2	5.2244	0.6381	2321.0	2321.611	1	3574.2	73.7%	2	K.TYFAHDALQQCTVGDIVLLR.A	2
*	step03.15394.15394.2	3.5943	0.4045	1086.195	1086.2655	1	969.0	87.5%	2	K.HELAEIVFK.V	2

gi|46367787|ref|NP_00

22.2%

636

70671

9.5

polyadenylate-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.18424.18424.2	2.4263	0.29	1158.577	1158.3749	1	527.1	80.0%	1	K.FSPAGPILSIR.V	2 2 2
	step05.15000.15000.2	2.3319	0.1253	2085.794	2086.2527	8	112.7	32.4%	1	R.RSLGYAYVNFQQPADAER.A	2 2
	step02.13986.13986.2	5.8624	0.4928	1930.676	1930.0663	1	2099.0	75.0%	2	R.SLGYAYVNFQQPADAER.A	2 2
	step02.13346.13346.2	2.3369	0.3167	1283.341	1283.4761	1	770.5	80.0%	1	R.ALDTM*NFDVIK.G	2 2
	step04.15231.15231.2	3.2457	0.2952	935.036	935.1021	1	837.6	93.8%	2	K.SGVGNIFIK.N	2 2
	step02.18570.18570.2	4.8904	0.6105	1808.755	1808.0176	1	2210.4	80.0%	1	K.ALYDTFSAFGNILSCK.V	2 2
	step04.14637.14637.2	2.5465	0.2147	1213.629	1213.4072	1	562.8	72.2%	1	R.AKEFTNVYIK.N	2 2
*	step05.15428.15428.2	3.5232	0.4074	1413.581	1413.6	1	1126.1	79.2%	1	R.KEFSPFGTITSAK.V	2
*	step02.15376.15376.2	2.5252	0.4007	1285.467	1285.4271	1	904.8	72.7%	1	K.EFSPFGTITSAK.V	2
	step02.16569.16569.2	5.4448	0.5424	1664.59	1663.8021	1	1642.5	82.1%	3	K.GFGFVCFSSPEEATK.A	2 2 2 2
	step06.18928.18928.2	3.922	0.499	1543.805	1543.8783	1	660.7	73.1%	4	R.IVATKPLYVALAQR.K	2 2
	step03.18175.18175.3	4.5306	0.3265	2757.952	2758.162	1	1164.5	35.9%	2	K.ITGMLLEIDNSELLHM*LESPESLR.S	3 3

Similarities: gi|208431833|ref|NP_0(7:5)
gi|45238849|ref|NP_11(3:9)
gi|185135971|ref|NP_0(3:9)

U	gi\|310118953\|ref\|XP_0	5	11	22.2%	387	42377	7.4	PREDICTED: anaphase-promoting complex subunit 1-like isoform 2 [Homo sapiens]
U	gi\|310118955\|ref\|XP_0	5	11	23.4%	368	40442	7.1	PREDICTED: anaphase-promoting complex subunit 1-like isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15371.15371.2	4.4606	0.5313	2175.658	2176.3677	1	1135.3	70.6%	2	R.VNVVQYPELSDHEFIEEK.E	2 2 2 2
step05.13154.13154.2	2.3385	0.1709	931.583	931.10846	5	399.4	75.0%	1	R.LLQLCQR.T	2 2
step04.16596.16596.3	4.5201	0.3599	3329.045	3329.6455	1	498.7	27.4%	2	R.NTTVDLNSGNIDVPPNMTSWASFHNGVAAGLK.I	3 3 3
step05.15680.15680.2	3.7742	0.4942	1402.586	1402.6204	1	855.6	81.8%	3	K.LATLNIHDYLTK.G	2 2
step06.19237.19237.2	3.0788	0.3103	1701.815	1700.9817	1	477.9	53.1%	3	K.GHEM*TSIGLLLGVSAAK.L	2 2 2

Similarities: gi|12056971|ref|NP_07(5:0)
gi|310118949|ref|XP_0(3:2)
gi|169164061|ref|XP_0(1:4)

U	gi\|310128730\|ref\|XP_0	5	7	22.2%	329	35882	6.7	PREDICTED: pyruvate kinase isozymes M1/M2-like isoform 2, partial [Homo sapiens]
U	gi\|310128736\|ref\|XP_0	5	7	26.0%	281	30720	7.0	PREDICTED: pyruvate kinase isozymes M1/M2-like isoform 1 [Homo sapiens]
U	gi\|310128734\|ref\|XP_0	5	7	26.0%	281	30720	7.0	PREDICTED: pyruvate kinase isozymes M1/M2-like isoform 3 [Homo sapiens]
U	gi\|310128732\|ref\|XP_0	5	7	22.2%	329	35882	6.7	PREDICTED: pyruvate kinase isozymes M1/M2-like isoform 4, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.8428.8428.2	3.0739	0.3307	1198.373	1198.351	1	1087.9	85.0%	2	R.LDIDSPPITAR.N	2 2 2
step03.16689.16689.2	3.6207	0.3978	2466.796	2466.7715	1	353.8	40.9%	1	R.TATESFASDPILYRPVAVALDTK.G	2 2 2 2
step04.17211.17211.3	5.3865	0.4033	3018.825	3019.3977	1	957.8	36.1%	1	R.TATESFASDPILYRPVAVALDTKGPEIR.T	3 3 3 3
step02.14229.14229.2	3.3914	0.2872	1781.607	1780.914	1	755.1	61.8%	1	K.GADFLVTEVENGGSLGSK.K	2 2 2 2
step02.19893.19893.3	4.6448	0.473	1877.327	1877.11	1	1710.9	46.7%	2	K.FGVEQDVDM*VFASFIR.K	3 3 3 3

Similarities: gi|310128738|ref|XP_0(4:1)
gi|33286418|ref|NP_00(5:0)
gi|33286420|ref|NP_87(5:0)

gi|42476169|ref|NP_06

22.0%

531

59976

4.6

RNA polymerase II-associated factor 1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13817.13817.2	2.8619	0.3452	1438.965	1439.5927	1	713.6	75.0%	1	R.IDPNVLLDPADEK.L	2
*	step02.8603.8603.2	3.2393	0.3736	1445.507	1445.5972	1	1537.2	83.3%	2	K.LLEEEIQAPTSSK.R	2
*	step03.12688.12688.2	3.2751	0.2585	1601.469	1601.7836	1	1103.5	69.2%	2	K.LLEEEIQAPTSSKR.S	2
*	step03.12835.12835.2	2.8797	0.4034	1388.382	1388.5074	1	993.2	80.0%	2	R.KTEYISTEFNR.Y	2
*	step03.17091.17091.2	4.0327	0.4239	1606.559	1605.922	1	1147.7	76.9%	2	R.VTPVEVMPVFPDFK.M	2
*	step03.15920.15920.2	2.3068	0.2302	1621.505	1621.9214	2	373.8	53.8%	1	R.VTPVEVM*PVFPDFK.M	2
*	step02.16245.16245.2	4.329	0.4516	2106.925	2106.3806	1	1868.6	73.5%	2	K.M*WINPCAQVIFDSDPAPK.D	3 2
*	step02.19344.19344.2	5.1126	0.5246	2550.042	2548.873	1	922.0	42.9%	3	R.GMMDEEGNQFVAYFLPVEETLK.K	2
*2	step02.18992.18992.2	5.4847	0.5506	2564.143	2564.8726	1	1431.4	57.1%	1	R.GMM*DEEGNQFVAYFLPVEETLK.K	2
*2	step02.18992.18992.2	5.4847	0.5506	2564.143	2564.8726	1	1431.4	57.1%	1	R.GM*MDEEGNQFVAYFLPVEETLK.K	2
*	step02.18792.18792.3	4.3105	0.26	2580.569	2580.8718	1	963.5	38.1%	1	R.GMMDEEGNQFVAYFLPVEETLK.K	3
*	step02.18758.18758.2	3.8059	0.4219	1485.657	1485.6233	1	1741.9	85.0%	2	K.GYEENYFFIFR.E	2
*	step04.14478.14478.2	2.5945	0.2606	1357.714	1357.5812	1	736.3	65.4%	1	K.AGVQSGTNALLVVK.H	2

U	gi\|187830823\|ref\|NP_0	7	13	22.0%	346	38501	6.0	cellular tumor antigen p53 isoform c [Homo sapiens]
U	gi\|187830855\|ref\|NP_0	7	13	22.3%	341	37826	5.8	cellular tumor antigen p53 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.11874.11875.2	2.8633	0.3049	1079.749	1079.1467	1	480.9	81.2%	2	K.TYQGSYGFR.L	2 2
step06.18054.18054.2	3.4044	0.4361	1032.326	1031.19	1	1498.1	94.4%	2	R.LGFLHSGTAK.S	2 2
step03.10759.10759.2	3.4319	0.4885	1341.487	1341.4857	1	1040.8	77.3%	2	K.SVTCTYSPALNK.M	2 2
step04.12764.12764.2	2.9079	0.2879	898.227	898.09875	1	730.5	100.0%	2	K.MFCQLAK.T	2 2 2 2
step04.15536.15536.2	3.3185	0.3019	1911.868	1912.129	1	851.9	65.6%	1	K.TCPVQLWVDSTPPPGTR.V	2 2 2 2
step03.11002.11002.1	1.8058	0.1391	696.796	696.8814	1	533.3	80.0%	1	R.AMAIYK.Q	1 1 1 1
step03.12678.12678.2	4.078	0.3765	1666.658	1666.8108	1	481.5	64.3%	3	R.CSDSDGLAPPQHLIR.V	2 2 2 2

Similarities: gi|187830894|ref|NP_0(4:3)
gi|120407068|ref|NP_0(7:0)
gi|187830901|ref|NP_0(4:3)

gi|13027604|ref|NP_07

22.0%

218

25650

10.0

28S ribosomal protein S34, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17198.17198.3	4.5367	0.4772	2219.666	2219.3958	1	914.7	40.3%	1	R.DSQLYAVDYETLTRPFSGR.R	3
*	step02.17174.17174.2	3.1823	0.3676	2219.724	2219.3958	1	222.1	44.4%	3	R.DSQLYAVDYETLTRPFSGR.R	2
*	step06.19529.19529.1	1.994	0.227	872.717	873.07715	1	199.9	71.4%	1	R.LPLFGLGR.L	1
*	step06.19523.19523.2	2.6303	0.3759	873.23	873.07715	1	803.6	92.9%	2	R.LPLFGLGR.L	2
*	step04.17199.17199.2	5.0415	0.5727	1864.591	1864.0048	1	1990.8	87.5%	2	K.SWLWQHDEPCYWR.L	2
*	step05.17283.17283.2	2.972	0.1746	937.149	936.1317	1	466.6	85.7%	4	K.AWGILTFK.G	2

U	gi\|270265835\|ref\|NP_0	34	64	21.7%	1782	199748	6.0	cullin-7 isoform 1 [Homo sapiens]
U	gi\|41872646\|ref\|NP_05	34	64	22.8%	1698	191159	5.9	cullin-7 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18308.18308.2	4.399	0.5211	1747.797	1748.0183	1	1208.9	70.0%	2	R.VPLGPGLHAYPDELIR.Q	2
step05.16865.16865.2	3.2042	0.4069	1228.446	1228.4885	1	954.9	83.3%	2	K.AEHILLWMSK.D	2
step02.12332.12332.2	5.8159	0.565	2389.986	2388.5945	1	1554.7	63.0%	2	K.MLGEDGQVIGPSQESAGEVGALDK.S	2
step02.7937.7937.2	3.1086	0.2593	2403.735	2404.594	1	770.8	52.2%	1	K.M*LGEDGQVIGPSQESAGEVGALDK.S	2
step06.21162.21162.2	5.6236	0.4878	2031.843	2032.4164	1	2758.0	75.0%	5	R.VLDLLMHMLSSPDYQIR.W	2
step05.18584.18584.2	4.3072	0.1584	2047.811	2048.4158	1	945.5	65.6%	3	R.VLDLLM*HMLSSPDYQIR.W	2
step05.17600.17600.2	4.9977	0.2012	2047.853	2048.4158	1	610.9	65.6%	2	R.VLDLLMHM*LSSPDYQIR.W	2
step05.16478.16478.2	4.1624	0.5506	2063.548	2064.4153	1	470.7	62.5%	2	R.VLDLLMHMLSSPDYQIR.W	2
step04.16394.16394.2	2.263	0.1576	806.395	806.0275	1	395.5	91.7%	1	R.VLFSLVK.R	2
step02.14110.14110.2	4.5274	0.522	1579.619	1578.707	1	1616.4	80.8%	2	R.SEFASGNTYALYVR.D	2
step02.13796.13796.2	5.7196	0.4839	1976.447	1977.0521	1	2460.4	87.5%	3	R.MLDDYEEISAGDEGEFR.Q	2 2
step04.13195.13195.2	2.5758	0.2659	1162.499	1162.3138	2	486.9	75.0%	2	R.DLINCHVYK.K	2
step02.18642.18642.3	5.6176	0.5637	3388.618	3388.726	1	1968.4	33.1%	2	K.YGPEALAGNQAYPSLLEAQEDVLLLDAQAQAK.D	3
step03.9386.9386.1	2.0678	0.3516	991.224	991.12256	1	410.4	55.6%	1	R.LVEGYGPAGK.I	1
step02.17258.17258.2	5.5568	0.5254	1988.681	1989.1703	1	2218.2	76.5%	2	K.ILLDLEQALSSEGTQENK.V	2
step02.17264.17264.3	3.9083	0.2853	1989.054	1989.1703	1	942.3	44.1%	2	K.ILLDLEQALSSEGTQENK.V	3
step05.20091.20091.2	4.0086	0.484	1544.63	1544.8217	1	1400.6	81.8%	4	R.EVLQELIFFLHR.L	2
step02.14354.14354.2	3.2611	0.2961	1319.542	1319.4915	1	884.0	72.7%	2	R.DYAVVLNQLGAR.D	2
step03.15858.15858.2	3.195	0.2687	1071.035	1071.2955	1	932.3	93.8%	2	R.VILLENLTR.F	2
step06.20086.20086.2	2.7652	0.3499	1072.892	1073.3148	1	396.8	85.7%	1	R.FWPIIQIR.I	2 2
step06.18089.18089.2	2.4706	0.1864	913.329	913.0566	1	815.4	85.7%	2	R.SLLHLSSR.L	2
step02.11870.11870.2	3.6154	0.3528	1375.467	1375.5087	1	620.4	87.5%	1	R.FLPDDEAAQALGK.T	2 2
step04.13552.13552.2	2.6113	0.4037	1159.824	1160.2214	1	926.2	88.9%	1	R.SHDWSSLATR.G	2
step04.16923.16923.2	6.1954	0.4654	2299.625	2299.4775	1	2865.6	75.0%	2	R.YCEHFNILQNSSSELFGPR.A	2
step04.16933.16933.3	5.3599	0.4179	2299.905	2299.4775	1	1968.4	45.8%	2	R.YCEHFNILQNSSSELFGPR.A	3
step06.19820.19822.2	5.42	0.4331	1732.236	1732.0537	1	3231.1	78.1%	2	R.AAFLLALQNGCAGALLK.L	2
step05.12124.12124.2	3.3402	0.4328	1477.434	1477.709	1	776.8	75.0%	1	R.LPQQM*LQSLSTSK.E	2
step04.11743.11743.2	2.8665	0.2342	931.219	930.08386	1	664.4	88.9%	1	K.IQVGLGASGK.E	2
step06.17102.17102.2	2.615	0.2243	1816.343	1817.079	1	554.2	43.8%	1	R.GPLDLHEQKDIPGGVLK.I	2
step02.13520.13520.3	4.8418	0.4447	2244.441	2244.4436	1	1655.2	47.4%	1	R.LIPPQTYLQAEGEDGQNLEK.R	3
step05.16818.16818.1	2.4263	0.371	1114.706	1115.345	1	145.7	68.8%	2	R.NLLNCLIVR.I	1
step05.16790.16790.2	3.2232	0.2907	1115.555	1115.345	1	914.8	87.5%	2	R.NLLNCLIVR.I	2
step06.21418.21418.2	5.3061	0.5163	2019.721	2019.2728	1	1783.0	66.7%	2	K.GSACSSTDVLSCILHLLGK.G	2
step04.14698.14698.2	5.9614	0.5872	1882.388	1881.0287	1	1209.5	75.0%	1	R.GVPYASCTATQSFSTFR.-	2

Similarities: gi|24307991|ref|NP_05(3:31)

gi|13699824|ref|NP_00

21.6%

1056

119159

5.6

kinesin-like protein KIF11 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18440.18440.2	5.2182	0.5526	2216.799	2217.3767	1	2142.1	66.7%	2	R.SPNEEYTWEEDPLAGIIPR.T	2
*	step03.164.164.2	5.9705	0.4823	2782.025	2783.0369	1	1462.1	56.5%	4	K.VSLLEIYNEELFDLLNPSSDVSER.L	2
*	step03.173.173.3	5.6334	0.4711	2783.431	2783.0369	1	1946.5	42.4%	2	K.VSLLEIYNEELFDLLNPSSDVSER.L	3
*	step03.10933.10933.2	2.7481	0.1824	1403.247	1403.5438	1	799.8	75.0%	1	R.TTAATLM*NAYSSR.S	2
*	step02.15884.15884.2	4.1963	0.2654	1470.892	1471.6411	1	1591.4	80.8%	2	K.LNLVDLAGSENIGR.S	2
*	step02.14613.14614.2	3.8684	0.4569	1486.874	1486.6558	1	1606.7	76.9%	3	R.EAGNINQSLLTLGR.V	2
*	step04.18771.18771.2	3.7234	0.3675	2832.145	2832.1558	1	576.1	32.0%	2	R.TSIIATISPASLNLEETLSTLEYAHR.A	2
*	step02.18003.18003.2	4.1423	0.3453	1672.181	1671.9137	1	2147.8	76.9%	1	K.LTVQEEQIVELIEK.I	2
*	step03.19030.19030.3	4.779	0.2125	3095.951	3096.4094	1	1058.3	35.0%	2	K.IGAVEEELNRVTELFMDNKNELDQCK.S	3
*	step02.8464.8464.2	5.14	0.576	1644.567	1643.7391	1	1665.4	75.0%	4	K.AVDQHNAEAQDIFGK.N	2
*	step03.18567.18567.2	3.0627	0.347	1679.544	1679.9194	1	1242.1	73.1%	2	K.NLNSLFNNMEELIK.D	2
*	step03.20175.20175.2	4.0821	0.3682	1270.117	1270.5433	1	1536.0	85.0%	2	K.TVLQELINVLK.T	2
*	step02.8334.8334.2	4.892	0.5476	1533.346	1532.5869	1	2038.3	91.7%	2	K.FCADSDGFSQELR.N	2
*	step02.17346.17346.3	5.6238	0.5411	2906.634	2907.0784	1	1578.7	38.5%	2	R.EQELHNLLEVVSQCCEASSSDITEK.S	3

gi|37537701|ref|NP_05

21.6%

932

101246

4.9

serine/threonine-protein phosphatase 6 regulatory subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.23822.23822.3	4.1433	0.4158	3449.272	3449.8926	1	1050.4	30.8%	1	R.LGGDESLLSLLYDFLDHEPPLNPLLASFFSK.T	3
*2	step06.19603.19603.2	2.9927	0.4808	1456.634	1456.7362	1	973.6	83.3%	1	K.HIGTSALM*DLLLR.L	2 2
*	step02.19388.19388.3	5.6672	0.4813	3369.304	3369.6697	1	1338.4	37.9%	2	R.DQGSQLQEALEPDPLLTALESQDCVEQLLK.N	3
*	step03.20104.20104.3	4.1761	0.3025	2974.332	2973.2996	1	802.8	26.0%	1	K.NM*FDGDRTESCLVSGTQVLLTLLETR.R	3
*	step02.15986.15986.2	3.2848	0.2832	1694.767	1694.8243	2	562.9	53.3%	1	R.VGTEGLVDSFSQGLER.S	2
*	step04.15140.15140.2	4.1049	0.5127	1602.681	1602.7732	1	2192.0	82.1%	2	R.SYAVSSSVLHGIEPR.L	2
*	step05.16569.16569.2	4.5488	0.6113	2526.898	2526.8503	1	917.7	52.3%	2	R.SLETPQPAASLPDNTMVTHLFQK.C	2
*	step03.12831.12831.2	3.7414	0.3878	1227.071	1227.3955	1	1159.3	85.0%	2	R.IANAVVQNLER.G	2
*	step02.14828.14828.2	2.8267	0.2247	2341.321	2341.297	1	247.8	44.4%	1	R.IQPFDDDEDEDIWEDSDTR.C	2
*	step02.8303.8303.2	2.5815	0.3535	1691.583	1691.7772	1	785.6	56.2%	1	R.DVGSSVWAAGTSAPEEK.G	2

Similarities: gi|13489083|ref|NP_06(1:9)

U	gi\|14110414\|ref\|NP_00	7	12	21.6%	306	32835	8.2	heterogeneous nuclear ribonucleoprotein D0 isoform c [Homo sapiens]
U	gi\|51477708\|ref\|NP_00	7	12	23.0%	287	30672	8.4	heterogeneous nuclear ribonucleoprotein D0 isoform d [Homo sapiens]
U	gi\|14110420\|ref\|NP_11	7	12	18.6%	355	38434	7.8	heterogeneous nuclear ribonucleoprotein D0 isoform a [Homo sapiens]
U	gi\|14110417\|ref\|NP_11	7	12	19.6%	336	36272	8.1	heterogeneous nuclear ribonucleoprotein D0 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step02.8010.8010.2	3.4091	0.431	1169.094	1168.3151	1	1138.0	88.9%	1	K.FGEVVDCTLK.L	2 2 2
	step05.18005.18005.1	1.8947	0.1588	914.587	915.11255	1	691.4	78.6%	2	R.GFGFVLFK.E	1 1
	step05.18018.18018.2	3.048	0.3606	915.541	915.11255	1	713.8	92.9%	2	R.GFGFVLFK.E	2 2
	step02.12563.12563.2	3.1498	0.3675	1489.766	1489.6516	1	938.7	65.4%	2	K.IFVGGLSPDTPEEK.I	2
	step02.17784.17784.2	4.4901	0.4835	2161.8	2162.3613	1	1295.7	63.9%	1	R.EYFGGFGEVESIELPMDNK.T	2
	step02.16906.16906.2	3.4953	0.3909	2177.813	2178.3606	1	747.8	47.2%	2	R.EYFGGFGEVESIELPM*DNK.T	2
	step05.16692.16692.2	3.8011	0.5207	1859.699	1860.1356	1	976.3	67.9%	2	R.GFCFITFKEEEPVKK.I	2

Similarities: gi|55956919|ref|NP_11(1:6)
gi|14110407|ref|NP_11(3:4)

U	gi\|32455264\|ref\|NP_85	4	7	21.6%	199	22110	8.1	peroxiredoxin-1 [Homo sapiens]
U	gi\|4505591\|ref\|NP_002	4	7	21.6%	199	22110	8.1	peroxiredoxin-1 [Homo sapiens]
U	gi\|32455266\|ref\|NP_85	4	7	21.6%	199	22110	8.1	peroxiredoxin-1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.8312.8312.2	2.7436	0.3719	1165.439	1165.3445	1	706.6	75.0%	1	K.ATAVMPDGQFK.D	2
step02.12002.12002.2	2.2373	0.2412	1108.382	1108.2694	1	868.4	88.9%	1	R.TIAQDYGVLK.A	2
step04.17247.17247.2	3.2577	0.4428	1360.807	1360.6266	1	1547.3	81.8%	3	R.GLFIIDDKGILR.Q	2 2
step03.14504.14504.2	3.2462	0.3981	1196.793	1197.3647	1	1194.6	88.9%	2	R.LVQAFQFTDK.H	2

Similarities: gi|5453549|ref|NP_006(1:3)

gi|310133085|ref|XP_0

21.6%

102

11494

9.7

PREDICTED: 60S ribosomal protein L3-like, partial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.18381.18381.2	5.2007	0.6594	2439.087	2438.7864	1	1548.3	54.8%	4	K.SINPLGGFVHYGEVTNDFVMLK.G	2 2
	step05.17673.17673.3	4.5277	0.5062	2455.175	2454.786	1	1554.3	46.4%	1	K.SINPLGGFVHYGEVTNDFVM*LK.G	3 3

Similarities: gi|4506649|ref|NP_000(2:0)

U	gi\|187830901\|ref\|NP_0	4	7	21.5%	209	23726	7.9	cellular tumor antigen p53 isoform e [Homo sapiens]
U	gi\|187830909\|ref\|NP_0	4	7	21.0%	214	24401	8.0	cellular tumor antigen p53 isoform f [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12764.12764.2	2.9079	0.2879	898.227	898.09875	1	730.5	100.0%	2	-.MFCQLAK.T	2 2 2 2
step04.15536.15536.2	3.3185	0.3019	1911.868	1912.129	1	851.9	65.6%	1	K.TCPVQLWVDSTPPPGTR.V	2 2 2 2
step03.11002.11002.1	1.8058	0.1391	696.796	696.8814	1	533.3	80.0%	1	R.AMAIYK.Q	1 1 1 1
step03.12678.12678.2	4.078	0.3765	1666.658	1666.8108	1	481.5	64.3%	3	R.CSDSDGLAPPQHLIR.V	2 2 2 2

Similarities: gi|187830894|ref|NP_0(4:0)
gi|120407068|ref|NP_0(4:0)
gi|187830823|ref|NP_0(4:0)

U	gi\|284813529\|ref\|NP_0	23	43	21.4%	1506	168936	5.1	protein VPRBP isoform 2 [Homo sapiens]
U	gi\|7662316\|ref\|NP_055	23	43	21.4%	1507	169007	5.1	protein VPRBP isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.17988.17988.3	6.9201	0.4447	2983.126	2983.3457	1	2092.4	37.0%	1	K.AELTTLLEQWEKEHGSGQDMVPILTR.M	3
step03.16274.16274.2	2.5408	0.1736	1412.193	1412.6338	1	270.9	63.6%	1	R.ADPECMLGHLLR.I	2
step02.19684.19684.2	4.8111	0.5049	2016.956	2017.4182	1	1309.2	76.5%	4	R.LLLDIMPGLETAVVFQEK.E	2
step05.15420.15420.2	3.2928	0.365	1468.0	1468.7267	1	1248.3	72.7%	1	R.LRELQLQEVALR.Q	2
step02.14076.14076.2	3.0621	0.2284	1200.769	1199.3821	1	1396.1	88.9%	2	R.ELQLQEVALR.Q	2
step06.21647.21647.2	4.0486	0.3458	2953.701	2953.4875	1	542.9	41.7%	1	R.LILQYLTPLGEYQELLPIFM*QLGSR.E	2
step06.16669.16669.2	2.9839	0.4395	1536.739	1536.7563	1	1158.4	73.1%	2	R.TEGGILVHPQPPYK.A	2
step04.14527.14527.2	3.6996	0.3342	1390.525	1390.5931	1	2156.1	86.4%	2	K.MWNVVQSNNGIK.V	2
step04.13267.13267.2	3.2951	0.3564	1406.462	1406.5925	1	1552.4	86.4%	2	K.M*WNVVQSNNGIK.V	2
step05.17846.17846.2	3.3077	0.4225	986.802	986.2736	1	709.9	93.8%	2	K.VLLSLLSIK.M	2
step06.18640.18640.2	4.4787	0.4552	1709.694	1710.0253	1	977.8	76.9%	2	K.LPLFSSCQIQQLM*K.E	2
step06.18136.18136.2	4.5161	0.4627	1626.697	1626.9225	1	751.3	73.3%	2	R.VSGKPLLIGTDVSLAR.L	2
step02.10470.10470.2	2.9759	0.4079	1090.346	1090.2524	1	1805.9	85.0%	2	K.GLGETATVLTK.E	2
step05.15560.15560.3	3.9987	0.513	2885.474	2884.214	1	1145.6	30.4%	1	K.EADLPMTAASHSSAFTPVTAAASPVSLPR.T	3
step05.14958.14958.3	6.0534	0.5478	2900.993	2900.2136	1	1429.4	34.8%	2	K.EADLPM*TAASHSSAFTPVTAAASPVSLPR.T	3
step04.19282.19282.2	3.1149	0.319	2032.679	2033.2075	1	448.0	43.8%	3	R.HLPS#PPTLDSIITEYLR.E	2
step02.7908.7908.2	3.6672	0.4969	1952.454	1951.9692	1	830.3	53.1%	2	R.EANEDESGFTCCAFSAR.E	2
step05.16083.16083.2	3.5222	0.2999	1369.522	1369.6488	1	1760.8	90.9%	2	R.FLMLGTCTGQLK.L	2
step05.15011.15011.2	2.6965	0.2595	1385.46	1385.6482	1	819.8	72.7%	2	R.FLM*LGTCTGQLK.L	2
step04.16178.16178.3	5.0363	0.5144	3124.515	3125.3044	1	1391.9	40.4%	2	K.LYNVFSGQEEASYNCHNSAITHLEPSR.D	3
step03.16905.16905.2	3.1415	0.297	1636.775	1636.8727	1	1473.5	76.9%	2	K.LLTLFNPDLANNYK.R	2
step02.18485.18485.2	5.7899	0.5478	2535.902	2535.7441	1	1861.3	61.9%	2	R.NCATFNPTDDLVLNDGVLWDVR.S	2
step03.14721.14721.2	2.8716	0.525	1797.928	1798.0293	1	1049.3	60.0%	1	R.TFNATDYKPIATIDVK.R	2

U	gi\|4506005\|ref\|NP_002	5	10	21.4%	327	37187	6.2	serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform 1 [Homo sapiens]
U	gi\|46249376\|ref\|NP_99	5	10	21.4%	327	37187	6.2	serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.19149.19149.2	5.5711	0.4905	2197.865	2197.6025	1	1789.2	72.2%	1	K.SREIFLSQPILLELEAPLK.I	2 2
step03.19170.19170.2	4.9794	0.3613	1953.294	1954.3386	1	1265.8	71.9%	3	R.EIFLSQPILLELEAPLK.I	2 2
step02.19498.19498.2	2.4949	0.4178	2583.318	2583.8337	1	641.8	45.2%	1	R.LFEYGGFPPEANYLFLGDYVDR.G	2
step06.19913.19913.2	2.7402	0.2031	1440.798	1440.7135	1	848.0	80.0%	1	K.IKYPENFFLLR.G	2 2 2
step02.18498.18498.2	5.811	0.5545	2115.898	2115.3557	1	1609.9	67.6%	4	K.TFTDCFNCLPIAAIVDEK.I	2 2 2

Similarities: gi|4506003|ref|NP_002(4:1)
gi|45827798|ref|NP_99(2:3)

gi|4506661|ref|NP_000

21.4%

266

29996

10.6

60S ribosomal protein L7a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15068.15068.2	2.6122	0.2921	1075.267	1074.2979	3	444.1	75.0%	1	K.KVVNPLFEK.R	2
*	step04.16095.16095.2	3.9882	0.5482	1571.99	1570.7744	1	1593.4	84.6%	2	K.VPPAINQFTQALDR.Q	2
*	step02.12084.12084.2	4.1171	0.3185	1346.589	1346.512	1	1104.4	79.2%	2	R.AGVNTVTTLVENK.K	2
*	step04.14563.14563.2	2.6356	0.2354	1474.771	1474.6849	2	438.1	53.8%	3	R.AGVNTVTTLVENKK.A	2
*	step03.13008.13008.2	5.1526	0.5782	2142.293	2142.3462	1	1125.0	57.9%	2	K.TCTTVAFTQVNSEDKGALAK.L	2

gi|4507789|ref|NP_003

21.4%

154

17862

8.5

ubiquitin-conjugating enzyme E2 L3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16661.16661.2	3.2269	0.2646	1790.79	1791.0815	1	1621.5	78.6%	2	R.IEINFPAEYPFKPPK.I	2
*	step06.18792.18792.2	4.6614	0.4907	1999.633	1999.293	1	1233.9	70.6%	1	K.GQVCLPVISAENWKPATK.T	2

U	gi\|14043070\|ref\|NP_11	9	14	21.2%	372	38747	9.1	heterogeneous nuclear ribonucleoprotein A1 isoform b [Homo sapiens]
U	gi\|4504445\|ref\|NP_002	9	14	24.7%	320	34196	9.2	heterogeneous nuclear ribonucleoprotein A1 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.16737.16737.2	3.4821	0.4274	1913.685	1914.1483	1	1536.8	68.8%	1	R.KLFIGGLSFETTDESLR.S	2 2
	step02.18011.18011.2	5.0958	0.5006	1785.853	1785.9753	1	2439.5	83.3%	2	K.LFIGGLSFETTDESLR.S	2 2
3	step04.14000.14000.1	1.8094	0.1221	733.649	733.9214	2	519.6	75.0%	1	K.IFVGGIK.E	1 1 1 1 1
2	step05.17153.17153.2	4.5691	0.5462	1881.458	1881.0815	1	1469.7	73.3%	3	K.IFVGGIKEDTEEHHLR.D	2 2 2
	step02.16427.16427.2	3.0017	0.3534	1219.496	1219.4336	1	1849.6	94.4%	2	K.IEVIEIMTDR.G	2 2
	step02.16665.16665.2	4.6772	0.5212	1700.652	1700.7859	1	1510.8	78.6%	1	R.GFAFVTFDDHDSVDK.I	2 2
	step03.16545.16545.2	2.7617	0.3902	2282.013	2282.5366	1	212.4	36.8%	1	R.GFAFVTFDDHDSVDKIVIQK.Y	2 2
	step03.11806.11806.2	2.4877	0.1834	1377.525	1376.4552	1	657.7	61.5%	1	R.SSGPYGGGGQYFAK.P	2 2
	step06.16642.16642.2	3.9405	0.415	1629.492	1629.7572	1	920.3	60.0%	2	R.SSGPYGGGGQYFAKPR.N	2

Similarities: gi|14043072|ref|NP_11(2:7)
gi|58761496|ref|NP_00(8:1)
gi|5803036|ref|NP_006(1:8)
gi|34740329|ref|NP_91(1:8)

U	gi\|4506003\|ref\|NP_002	5	10	21.2%	330	37512	6.3	serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform 1 [Homo sapiens]
U	gi\|56790945\|ref\|NP_00	5	10	20.5%	341	38631	6.6	serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform 3 [Homo sapiens]
U	gi\|4506007\|ref\|NP_002	5	10	21.7%	323	36984	6.5	serine/threonine-protein phosphatase PP1-gamma catalytic subunit [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.19149.19149.2	5.5711	0.4905	2197.865	2197.6025	1	1789.2	72.2%	1	K.SREIFLSQPILLELEAPLK.I	2 2
step03.19170.19170.2	4.9794	0.3613	1953.294	1954.3386	1	1265.8	71.9%	3	R.EIFLSQPILLELEAPLK.I	2 2
step02.19050.19050.2	3.5272	0.4733	2600.571	2599.8333	1	393.8	42.9%	1	R.LFEYGGFPPESNYLFLGDYVDR.G	2 2
step06.19913.19913.2	2.7402	0.2031	1440.798	1440.7135	1	848.0	80.0%	1	K.IKYPENFFLLR.G	2 2 2
step02.18498.18498.2	5.811	0.5545	2115.898	2115.3557	1	1609.9	67.6%	4	K.TFTDCFNCLPIAAIVDEK.I	2 2 2

Similarities: gi|4506005|ref|NP_002(4:1)
gi|45827798|ref|NP_99(3:2)

gi|170763500|ref|NP_0

21.0%

290

33489

4.3

protein SET isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.13215.13215.2	4.761	0.5355	2195.898	2196.2742	1	944.8	70.6%	4	K.EQQEAIEHIDEVQNEIDR.L	2 2
step02.13227.13227.3	4.81	0.3651	2196.717	2196.2742	1	1743.9	47.1%	2	K.EQQEAIEHIDEVQNEIDR.L	3 3
step02.18881.18881.3	6.049	0.4654	3450.815	3451.6543	1	2111.8	33.0%	8	K.EQQEAIEHIDEVQNEIDRLNEQASEEILK.V	3 3
step02.7736.7736.1	2.8192	0.1697	1273.664	1274.4026	1	673.1	75.0%	1	R.LNEQASEEILK.V	1 1
step02.13442.13442.2	5.5421	0.4093	1759.929	1758.9514	1	2117.7	82.1%	8	R.LNEQASEEILKVEQK.Y	2 2
step02.13214.13214.3	3.9848	0.3757	1760.007	1758.9514	1	598.9	44.6%	1	R.LNEQASEEILKVEQK.Y	3 3
step04.7164.7164.2	3.7964	0.3978	1209.415	1209.3274	1	1053.9	88.9%	29	R.VEVTEFEDIK.S	2 2 2
step02.12539.12539.1	2.2956	0.0915	1209.739	1209.3274	6	678.0	66.7%	1	R.VEVTEFEDIK.S	1 1 1
step02.13983.13983.2	3.7541	0.439	1672.632	1672.8171	1	1088.8	76.9%	2	R.VEVTEFEDIKSGYR.I	2 2 2
step05.17264.17264.2	5.0603	0.3714	2304.829	2305.4424	1	1194.3	61.8%	8	K.SGYRIDFYFDENPYFENK.V	2 2
step04.17250.17250.3	5.4607	0.4296	2305.778	2305.4424	1	2021.8	45.6%	1	K.SGYRIDFYFDENPYFENK.V	3 3
step02.17306.17307.1	3.4001	0.0877	1841.541	1841.9528	1	671.3	61.5%	1	R.IDFYFDENPYFENK.V	1 1
step02.17313.17313.3	4.638	0.448	1842.26	1841.9528	1	1801.5	51.9%	2	R.IDFYFDENPYFENK.V	3 3
step03.16548.16549.2	5.3452	0.4236	1842.685	1841.9528	1	2287.2	80.8%	10	R.IDFYFDENPYFENK.V	2 2

Similarities: gi|170763498|ref|NP_0(14:0)
gi|310114661|ref|XP_0(3:11)

gi|4506619|ref|NP_000

21.0%

157

17779

11.3

60S ribosomal protein L24 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14799.14799.2	2.8638	0.1932	1465.475	1465.6902	1	1180.3	86.4%	1	-.M*KVELCSFSGYK.I	2
*	step05.15586.15586.2	2.4578	0.226	967.421	967.1458	1	743.3	92.9%	1	K.VFQFLNAK.C	2
*	step02.15742.15742.2	4.4449	0.4836	1263.515	1262.5016	1	1778.4	87.5%	2	R.AITGASLADIMAK.R	2
*	step02.12119.12119.2	3.9102	0.492	1278.355	1278.501	1	1816.7	87.5%	2	R.AITGASLADIM*AK.R	2

gi|4503509|ref|NP_003

1382

166569

6.8

eukaryotic translation initiation factor 3 subunit A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.9726.9726.1	1.8191	0.2505	1006.609	1007.122	1	475.2	68.8%	1	R.ANEFLEVGK.K	1
*	step02.9910.9910.2	2.7332	0.3052	1007.324	1007.122	2	703.0	68.8%	3	R.ANEFLEVGK.K	2
*	step04.17272.17272.3	3.5515	0.1863	1521.116	1520.8187	2	1293.1	52.1%	1	K.KQPALDVLYDVMK.S	3
*	step04.15661.15661.2	3.4729	0.4835	1536.684	1536.8181	1	1236.2	87.5%	2	K.KQPALDVLYDVM*K.S	2
*	step04.14708.14709.2	3.8626	0.4746	1334.683	1334.5046	1	1395.9	85.0%	7	R.LYHDIAQQAFK.F	2
*	step05.13691.13691.3	3.6256	0.3837	1335.074	1334.5046	1	2034.0	62.5%	1	R.LYHDIAQQAFK.F	3
*	step04.13646.13646.1	2.0073	0.2013	987.508	988.11536	1	225.3	75.0%	2	K.FCLQYTR.K	1
*	step02.18940.18940.3	5.688	0.4647	2126.282	2125.4304	1	2571.6	51.5%	1	R.LVQLDSAISM*ELWQEAFK.A	3
*	step03.15918.15918.2	3.7738	0.3777	1416.616	1416.6039	1	891.9	75.0%	2	K.AVEDIHGLFSLSK.K	2
*	step06.20172.20172.2	2.9452	0.3418	1411.304	1411.5507	1	1294.1	75.0%	1	K.SGNALFHASTLHR.L	2
*	step05.17037.17037.2	2.3332	0.2556	1523.67	1523.8422	1	480.5	57.7%	2	R.VLLATLSIPITPER.T	2
*	step02.16157.16157.1	2.2057	0.1863	1246.263	1246.499	3	820.1	65.0%	1	R.LLDMDGIIVEK.Q	1
*	step02.16114.16114.2	2.951	0.3795	1246.571	1246.499	1	988.1	85.0%	2	R.LLDMDGIIVEK.Q	2
*	step02.9028.9028.2	2.292	0.2007	1262.426	1262.4984	1	832.6	75.0%	1	R.LLDM*DGIIVEK.Q	2
*	step03.13230.13230.2	3.0348	0.3702	1047.112	1047.2543	1	963.2	93.8%	2	R.IGLINDM*VR.F	2
*	step06.20939.20939.2	4.9894	0.4849	1781.734	1781.0004	1	2086.3	73.1%	11	K.DLYNWLEVEFNPLK.L	2
*	step03.15534.15534.3	4.3334	0.4104	2796.591	2796.0852	1	1363.5	40.9%	1	R.EQPEKEPELQQYVPQLQNNTILR.L	3
*	step03.15565.15565.2	3.5525	0.4738	2796.832	2796.0852	1	525.8	47.7%	1	R.EQPEKEPELQQYVPQLQNNTILR.L	2
*	step04.17194.17196.2	4.9416	0.5987	1940.551	1940.189	1	2274.2	76.7%	4	R.LLQQVSQIYQSIEFSR.L	2
*	step04.18787.18787.2	3.8709	0.3945	1736.239	1736.0043	1	673.6	78.6%	2	R.LTSLVPFVDAFQLER.A	2
*	step02.14124.14124.2	3.1643	0.6076	1445.485	1445.559	1	1423.9	87.5%	2	R.TLSFGSDLNYATR.E	2
*	step03.13492.13492.2	2.9773	0.3535	2005.558	2006.2292	1	781.2	70.6%	2	R.EDAPIGPHLQSMPSEQIR.N	2
*	step04.15249.15249.2	3.4831	0.3892	1263.516	1263.4896	1	1565.8	86.4%	3	R.NQLTAMSSVLAK.A	2
*	step04.11948.11948.2	3.0772	0.4058	1279.334	1279.489	1	981.1	81.8%	2	R.NQLTAM*SSVLAK.A	2
*	step02.18782.18782.2	5.8967	0.488	2467.886	2468.7612	1	1452.1	60.0%	2	K.AFKDIDIEDLEELDPDFIMAK.Q	2
*	step02.18776.18776.3	5.0483	0.3464	2468.413	2468.7612	1	2028.4	43.8%	2	K.AFKDIDIEDLEELDPDFIMAK.Q	3
*	step02.18330.18330.2	5.4106	0.5146	2485.128	2484.7605	1	1064.5	60.0%	2	K.AFKDIDIEDLEELDPDFIM*AK.Q	2
*	step02.18722.18722.2	3.6253	0.4834	2121.722	2122.3354	1	1312.2	61.8%	1	K.DIDIEDLEELDPDFIMAK.Q	2
*	step02.18170.18170.2	5.3914	0.6085	2138.618	2138.3347	1	1710.0	73.5%	2	K.DIDIEDLEELDPDFIM*AK.Q	2
*	step04.15709.15709.2	3.0073	0.2577	1111.401	1111.3596	1	1063.1	93.8%	2	K.RLEEIPLIK.S	2
*	step02.14794.14794.2	2.8162	0.1819	955.341	955.1733	1	679.6	92.9%	2	R.LEEIPLIK.S	2
*	step02.14247.14247.2	4.4347	0.5096	1849.275	1849.9998	1	2157.6	84.6%	1	R.IKDMDLWEQQEEER.I	2
*	step03.11235.11235.2	2.5042	0.3298	992.313	992.1755	3	365.8	85.7%	1	R.ITTMQLER.E	2
*	step02.14105.14105.1	1.8874	0.2611	780.619	780.95844	1	227.4	80.0%	2	R.DLFVMR.L	1

gi|23111018|ref|NP_69

852

94370

6.7

RNA-binding protein 10 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.17055.17055.3	4.3246	0.4294	1726.078	1725.8849	1	1847.7	53.6%	2	R.GFAFVEFSHLQDATR.W	3 3
step06.19393.19393.2	4.9472	0.4288	1726.639	1725.8849	1	2628.9	85.7%	3	R.GFAFVEFSHLQDATR.W	2 2
step05.15593.15593.2	4.5969	0.4395	1770.429	1770.0059	1	1339.0	82.1%	2	R.WMEANQHSLNILGQK.V	2 2
step05.15018.15018.2	4.3988	0.4041	1786.579	1786.0052	1	744.6	75.0%	2	R.WM*EANQHSLNILGQK.V	2 2
step02.10823.10823.2	3.4503	0.2897	1192.416	1192.2968	1	1148.9	87.5%	2	K.INEDWLCNK.C	2 2
step02.8974.8974.2	2.8481	0.2948	1198.554	1198.3542	1	742.9	75.0%	3	R.LDQQTLPLGGR.E	2 2
step06.20870.20870.3	3.8557	0.3966	2828.741	2829.182	1	906.2	26.9%	2	R.NLNPHSTMDSILGALAPYAVLSSSNVR.V	3 3
step06.20050.20050.2	5.5184	0.6354	2844.202	2845.1812	1	1687.7	57.7%	2	R.NLNPHSTM*DSILGALAPYAVLSSSNVR.V	2 2
step03.12270.12270.2	2.7945	0.4077	1517.528	1516.6372	1	573.7	61.5%	2	R.TYVPALEQSADGHK.E	2 2
step03.12825.12825.2	5.0835	0.5776	2187.639	2187.352	1	1108.8	62.5%	2	R.TYVPALEQSADGHKETGAPSK.E	2 2
step04.14292.14292.2	2.6772	0.391	1149.513	1149.2816	1	717.0	83.3%	2	K.NSFQPISSLR.D	2 2
step02.8372.8372.2	3.4054	0.2615	1440.376	1439.5496	1	967.6	80.8%	2	R.ESATADAGYAILEK.K	2 2
step03.11902.11904.2	2.3836	0.1099	1384.501	1384.5587	1	697.3	68.2%	1	R.EKYGIPEPPEPK.R	2 2
step03.13957.13957.2	4.818	0.5803	1856.714	1857.0137	1	1795.1	71.9%	2	R.KYGGISTASVDFEQPTR.D	2 2
step04.11809.11809.2	2.3008	0.1117	997.029	997.21716	1	1010.8	100.0%	1	R.MLQAMGWK.E	2 2
step04.13971.13971.2	2.5359	0.2867	1974.931	1975.1022	1	453.9	47.1%	1	R.GSSYGVTSTESYKETLHK.T	2 2

Similarities: gi|20127479|ref|NP_00(16:0)

gi|24234747|ref|NP_00

390

43062

5.3

interleukin enhancer-binding factor 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16743.16743.2	4.0505	0.4633	2255.809	2256.5022	1	889.2	50.0%	1	K.RNQDLAPNSAEQASILSLVTK.I	2
*	step02.17114.17114.2	6.0745	0.6146	2099.953	2100.316	1	1059.8	71.1%	2	R.NQDLAPNSAEQASILSLVTK.I	2
*	step02.18983.18983.3	4.4011	0.3713	2584.721	2583.9216	1	976.5	33.0%	1	K.INNVIDNLIVAPGTFEVQIEEVR.Q	3
*	step04.17053.17053.2	4.6008	0.5423	1411.588	1410.684	1	1540.1	84.6%	3	K.ILPTLEAVAALGNK.V	2
*	step06.17909.17909.2	2.3922	0.2274	1237.497	1237.5166	2	623.8	80.0%	2	K.ILITTVPPNLR.K	2
*	step02.9450.9450.2	3.1189	0.2684	1426.86	1426.5126	1	686.6	68.2%	2	R.WFEENASQSTVK.V	2

gi|68800128|ref|NP_00

240

27882

8.7

splicing factor U2AF 35 kDa subunit isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.14257.14257.2	2.236	0.4373	1065.723	1065.1965	1	476.4	78.6%	2	K.VNCSFYFK.I	2 2
step04.16014.16014.2	4.4803	0.5074	2754.872	2755.0037	1	840.4	41.3%	2	K.YGEVEEMNVCDNLGDHLVGNVYVK.F	2 2 2
step02.16310.16310.3	5.9207	0.477	2755.118	2755.0037	1	1795.8	43.5%	2	K.YGEVEEMNVCDNLGDHLVGNVYVK.F	3 3 3
step02.15197.15197.3	6.1967	0.5323	2770.958	2771.003	1	1915.8	42.4%	2	K.YGEVEEM*NVCDNLGDHLVGNVYVK.F	3 3 3
step02.15240.15240.2	4.4807	0.5164	2770.997	2771.003	1	346.2	39.1%	2	K.YGEVEEM*NVCDNLGDHLVGNVYVK.F	2 2 2
step05.16586.16586.3	4.853	0.5002	2116.039	2115.3357	1	935.3	44.1%	2	R.WFNGQPIHAELSPVTDFR.E	3 3 3 3
step05.16565.16565.2	5.6525	0.5368	2116.622	2115.3357	1	1393.7	70.6%	3	R.WFNGQPIHAELSPVTDFR.E	2 2 2 2

Similarities: gi|5803207|ref|NP_006(7:0)
gi|68800138|ref|NP_00(6:1)
gi|310110750|ref|XP_0(2:5)

U	gi\|13027644\|ref\|NP_07	4	6	20.8%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|4507135\|ref\|NP_003	4	6	20.8%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|4507125\|ref\|NP_003	4	6	21.6%	231	23656	10.9	small nuclear ribonucleoprotein-associated proteins B and B' isoform B [Homo sapiens]
U	gi\|38150007\|ref\|NP_93	4	6	20.8%	240	24610	11.2	small nuclear ribonucleoprotein-associated proteins B and B' isoform B' [Homo sapiens]
U	gi\|13027650\|ref\|NP_07	4	6	20.8%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|13027648\|ref\|NP_07	4	6	20.8%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|13027646\|ref\|NP_07	4	6	20.8%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.15602.15602.1	2.2983	0.1887	826.578	826.0173	6	336.2	75.0%	2	R.IFIGTFK.A	1
step05.16085.16085.2	2.857	0.3507	1850.9	1852.092	1	472.8	53.8%	2	K.HMNLILCDCDEFRK.I	2
step06.19765.19765.2	3.1296	0.3999	883.174	883.1566	1	751.1	92.9%	1	R.VLGLVLLR.G	2
step03.12190.12190.2	3.6557	0.5422	2185.79	2185.4443	1	414.8	50.0%	1	R.GENLVSM*TVEGPPPKDTGIAR.V	2

U	gi\|33239451\|ref\|NP_87	5	9	20.7%	261	28769	4.7	proliferating cell nuclear antigen [Homo sapiens]
U	gi\|4505641\|ref\|NP_002	5	9	20.7%	261	28769	4.7	proliferating cell nuclear antigen [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13963.13963.2	3.0919	0.442	1382.617	1382.6327	1	1409.0	79.2%	2	R.NLAM*GVNLTSMSK.I	2
step04.12272.12272.2	3.2895	0.4625	1398.219	1398.6322	1	925.4	75.0%	2	R.NLAMGVNLTSMSK.I	2
step02.16325.16325.2	4.0857	0.4163	2482.646	2482.7827	1	986.5	55.0%	2	K.LM*DLDVEQLGIPEQEYSCVVK.M	2
step02.8793.8793.2	3.1649	0.3715	1294.849	1294.3956	1	993.0	70.8%	1	K.FSASGELGNGNIK.L	2
step04.16348.16348.1	2.0809	0.2413	932.589	933.0847	1	459.5	75.0%	2	R.YLNFFTK.A	1

gi|4503471|ref|NP_001

462

50141

9.0

elongation factor 1-alpha 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14970.14970.2	2.4066	0.3023	1405.766	1405.5828	1	963.8	72.7%	1	K.YYVTIIDAPGHR.D	2
	step05.16241.16241.2	3.2175	0.4841	1315.76	1315.5427	1	558.0	81.8%	4	R.EHALLAYTLGVK.Q	2 2
*	step06.20177.20178.3	5.1877	0.5322	3023.764	3023.3813	1	902.3	29.6%	2	K.DGNASGTTLLEALDCILPPTRPTDKPLR.L	3
	step03.13389.13389.1	1.9176	0.1808	975.607	976.151	1	528.5	78.6%	1	R.LPLQDVYK.I	1 1
	step03.13358.13358.2	2.6467	0.2547	976.277	976.151	1	445.8	85.7%	1	R.LPLQDVYK.I	2 2
	step05.12908.12908.2	3.5255	0.4125	1026.397	1026.2148	1	1108.8	90.0%	2	K.IGGIGTVPVGR.V	2 2
*	step05.16665.16665.2	4.7257	0.5315	2516.108	2516.9817	1	824.6	54.3%	3	R.VETGVLKPGMVVTFAPVNVTTEVK.S	2
*	step05.16667.16667.3	3.8793	0.3409	2517.232	2516.9817	2	561.2	28.3%	1	R.VETGVLKPGMVVTFAPVNVTTEVK.S	3
*	step05.15968.15968.2	4.3987	0.4359	2532.826	2532.981	1	807.9	56.5%	2	R.VETGVLKPGM*VVTFAPVNVTTEVK.S	2

Similarities: gi|4503475|ref|NP_001(4:5)

U	gi\|18375623\|ref\|NP_54	8	12	20.6%	428	48991	5.7	spliceosome RNA helicase BAT1 [Homo sapiens]
U	gi\|4758112\|ref\|NP_004	8	12	20.6%	428	48991	5.7	spliceosome RNA helicase BAT1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14019.14019.2	2.3336	0.4003	1297.702	1297.4012	1	846.5	77.3%	1	K.GSYVSIHSSGFR.D	2 2
step04.16902.16902.2	2.3649	0.17	1245.106	1244.5077	2	843.1	77.8%	2	R.DFLLKPELLR.A	2 2
step06.19754.19754.2	2.2696	0.1872	1138.453	1138.3835	1	597.5	65.0%	1	K.VAVFFGGLSIK.K	2
step06.18775.18775.2	3.0997	0.3892	1463.318	1463.7054	1	665.3	72.7%	2	K.LTLHGLQQYYVK.L	2 2
step05.16350.16350.1	2.0108	0.2044	1103.721	1104.3271	1	251.9	66.7%	1	R.ILVATNLFGR.G	1 1
step05.16310.16310.2	3.3741	0.4672	1104.363	1104.3271	1	1216.3	94.4%	2	R.ILVATNLFGR.G	2 2
step02.15960.15960.2	4.5837	0.5472	2301.085	2301.477	1	1424.2	66.7%	1	R.VNIAFNYDMPEDSDTYLHR.V	2
step02.14596.14596.2	4.0171	0.3868	1480.517	1480.6017	1	1817.0	76.9%	2	K.GLAITFVSDENDAK.I	2 2

Similarities: gi|21040371|ref|NP_00(6:2)

gi|83715985|ref|NP_00

252

25984

7.2

3-hydroxyacyl-CoA dehydrogenase type-2 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15947.15947.2	2.7148	0.204	1184.765	1185.4652	3	820.7	72.7%	1	K.GGIVGMTLPIAR.D	2 2
step05.15594.15594.2	2.4471	0.1852	1622.634	1622.8428	1	1164.1	73.1%	1	K.VCNFLASQVPFPSR.L	2 2
step03.20468.20468.3	5.3402	0.4483	2879.757	2880.2468	1	1883.0	36.0%	1	R.LGDPAEYAHLVQAIIENPFLNGEVIR.L	3 3

Similarities: gi|4758504|ref|NP_004(3:0)

gi|18104948|ref|NP_00

160

18565

10.5

60S ribosomal protein L21 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14489.14489.2	5.0311	0.3924	1641.803	1641.8958	1	2897.2	89.3%	2	R.VYNVTQHAVGIVVNK.Q	2
*	step02.17333.17333.2	3.5742	0.4889	2094.185	2095.358	1	913.7	58.8%	2	R.TNGKEPELLEPIPYEFM*A.-	2

gi|4506623|ref|NP_000

136

15798

10.6

60S ribosomal protein L27 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14781.14781.2	2.461	0.3328	827.118	827.0499	1	630.2	85.7%	3	K.VVLVLAGR.Y	2
*	step05.14424.14424.2	2.5065	0.3007	1408.093	1408.6102	1	1319.1	80.0%	2	K.VYNYNHLMPTR.Y	2
*	step05.12918.12918.2	2.2815	0.3223	1424.7	1424.6096	1	447.5	65.0%	1	K.VYNYNHLM*PTR.Y	2
*	step02.12364.12364.2	2.5328	0.4721	1050.27	1050.1868	1	750.5	81.2%	2	R.YSVDIPLDK.T	2

gi|16950603|ref|NP_06

20.4%

323

36844

8.2

28S ribosomal protein S35, mitochondrial isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.16162.16162.3	3.7947	0.2903	2941.032	2941.133	1	908.4	28.3%	1	K.HCEALKDFCTEWPAALDSDEKCEK.H	3
*	step03.18949.18949.2	3.6206	0.4539	1203.507	1203.4773	1	1143.3	88.9%	4	R.NILETLLQMK.A	2
*	step03.17403.17403.2	2.8621	0.371	1218.869	1219.4767	1	1261.1	83.3%	2	R.NILETLLQM*K.A	2
*	step03.14023.14023.2	4.0799	0.4362	1519.72	1519.746	1	1068.9	79.2%	2	K.NMEINKEELLGTK.E	2
*	step03.12566.12566.2	4.3376	0.5624	2197.858	2198.33	1	1681.5	66.7%	1	K.SVVSLKNEEENENSISQYK.E	2

U	gi\|4505409\|ref\|NP_002	3	4	20.4%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]
U	gi\|66392227\|ref\|NP_00	3	4	20.4%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]
U	gi\|66392205\|ref\|NP_00	3	4	20.4%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]
U	gi\|66392192\|ref\|NP_00	3	4	20.4%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14110.14110.2	2.9181	0.3992	1345.534	1345.572	1	638.6	68.2%	2	R.TFIAIKPDGVQR.G	2 2 2
step04.18736.18736.2	3.3645	0.4088	2111.285	2110.4856	1	636.1	41.7%	1	K.YM*NSGPVVAMVWEGLNVVK.T	2 2
step04.17144.17144.2	5.4022	0.537	2125.834	2126.485	1	1604.3	66.7%	1	K.YMNSGPVVAMVWEGLNVVK.T	2 2

Similarities: gi|66392203|ref|NP_00(3:0)
gi|38045913|ref|NP_93(1:2)

U	gi\|74099697\|ref\|NP_00	7	19	20.3%	449	49264	6.3	heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
U	gi\|9624998\|ref\|NP_062	7	19	20.3%	449	49264	6.3	heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.14928.14928.2	3.1223	0.5555	1508.637	1508.6752	1	487.7	79.2%	2	R.GLPWSCSADEVMR.F	2
step02.16731.16731.2	5.8707	0.4305	1843.742	1842.9838	1	2725.2	75.0%	3	R.STGEAFVQFASQEIAEK.A	2 2
step02.12504.12504.2	3.0292	0.4065	1602.305	1602.7039	1	772.3	70.8%	2	R.DLNYCFSGMSDHR.Y	2 2
step02.18735.18735.2	5.1293	0.4717	2030.671	2030.2493	1	1442.4	65.6%	4	R.ATENDIYNFFSPLNPMR.V	2
step02.18094.18094.2	4.1256	0.4171	2046.775	2046.2487	1	1084.4	59.4%	2	R.ATENDIYNFFSPLNPM*R.V	2
step03.10220.10220.2	2.9718	0.4468	1093.169	1093.2181	1	1178.7	83.3%	5	R.VHIEIGPDGR.V	2 2 2
step02.14379.14379.2	4.9742	0.5758	2162.781	2163.3508	1	1389.4	57.5%	1	R.VTGEADVEFATHEDAVAAMAK.D	2

Similarities: gi|148470397|ref|NP_0(1:6)
gi|5031753|ref|NP_005(3:4)

gi|13654237|ref|NP_00

131

20.2%

4128

469093

7.1

DNA-dependent protein kinase catalytic subunit isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.19008.19008.2	4.9894	0.563	2621.1	2620.9768	1	1061.2	47.9%	2	R.GLGQECVLSSSPAVLALQTSLVFSR.D	2 2 2
	step04.17581.17581.2	2.3443	0.1261	1285.819	1284.6067	1	504.0	75.0%	1	K.CKIPALDLLIK.L	2 2 2
	step03.20211.20211.2	4.6191	0.5528	2859.357	2859.2495	1	715.9	45.8%	3	K.VYELLGLLGEVHPSEMINNAENLFR.A	2 2 2
	step03.20233.20234.3	6.6657	0.5783	2859.518	2859.2495	1	1952.3	44.8%	5	K.VYELLGLLGEVHPSEMINNAENLFR.A	3 3 3
	step03.18820.18820.2	3.1997	0.3509	2874.505	2875.2488	1	272.6	35.4%	1	K.VYELLGLLGEVHPSEM*INNAENLFR.A	2 2 2
	step05.14724.14724.2	2.4297	0.1602	971.375	971.2125	1	1004.1	75.0%	2	K.LPVLAGCLK.G	2 2 2
	step04.16987.16987.2	4.0427	0.3775	1241.4	1240.4244	1	1080.8	80.0%	2	K.GLSSLLCNFTK.S	2 2 2
	step04.12260.12260.2	2.3448	0.3369	934.246	934.0742	1	760.2	100.0%	1	R.YAVPSAGLR.L	2 2 2
	step03.17482.17484.2	3.8052	0.4213	1150.535	1150.3495	1	1739.1	85.0%	1	K.AALSALESFLK.Q	2 2 2
	step04.15607.15607.1	1.9776	0.2194	832.841	833.053	11	692.3	71.4%	1	K.VFLALAAK.G	1 1 1
	step05.14940.14940.2	3.7221	0.4287	1444.056	1444.7255	1	1635.0	73.1%	1	R.VVQMLGSLGGQINK.N	2 2 2
	step06.21038.21038.2	2.9556	0.4714	1706.118	1705.1	1	710.8	76.9%	2	R.EMKPVIFLDVFLPR.V	2 2 2
	step06.20617.20617.2	2.8549	0.4561	1721.727	1721.0994	1	234.2	65.4%	1	R.EM*KPVIFLDVFLPR.V	2 2 2
	step03.11295.11295.2	4.4342	0.3898	2100.412	2100.3613	1	791.6	66.7%	2	K.ATQMPEGGQGAPPMYQLYK.R	2 2 2
	step04.1362.1362.3	4.3252	0.3625	2947.626	2946.2988	1	1317.1	32.7%	1	K.KFESQDTVALLEAILDGIVDPVDSTLR.D	3 3
	step03.1748.1748.2	3.9223	0.4685	2819.051	2818.1257	1	757.3	38.0%	1	K.FESQDTVALLEAILDGIVDPVDSTLR.D	2 2
	step06.19043.19043.2	3.7954	0.5807	1374.401	1374.6118	1	1820.2	81.8%	1	R.LYSLALHPNAFK.R	2 2 2
	step04.18181.18181.2	3.1208	0.3418	1617.605	1617.9043	1	279.6	71.4%	3	R.GFPPSASLCLLDLVK.W	2 2 2
	step03.20013.20013.2	5.5097	0.5391	2076.695	2077.4321	1	1472.1	63.9%	3	K.AVAFFLESIAMHDIIAAEK.C	2 2 2
	step03.18910.18910.2	5.0052	0.4919	2093.366	2093.4316	1	702.5	58.3%	2	K.AVAFFLESIAM*HDIIAAEK.C	2 2 2
	step02.16952.16952.2	4.7376	0.4861	1984.933	1985.2467	1	1644.4	75.0%	2	R.IM*EFTTTLLNTSPEGWK.L	2 2 2
	step03.12794.12794.2	2.2789	0.1114	996.463	997.1303	16	510.6	71.4%	1	K.DILETHLR.E	2 2 2
	step02.19038.19038.2	2.5197	0.3624	1990.448	1991.2528	1	537.6	47.1%	1	K.NLDLAVLELMQSSVDNTK.M	2 2 2
	step02.16908.16908.2	3.0203	0.4523	2006.678	2007.2522	1	555.6	58.8%	2	K.NLDLAVLELM*QSSVDNTK.M	2 2 2
	step06.18589.18589.2	2.5317	0.2225	1211.499	1211.4377	2	500.0	66.7%	2	K.LATTILQHWK.K	2 2 2
	step05.15814.15814.2	2.2427	0.2531	946.556	946.233	1	1550.7	100.0%	1	K.M*AVLALLAK.I	2 2 2
	step06.19374.19374.2	3.4961	0.4303	1785.554	1785.1035	1	543.3	64.3%	3	R.VLEQLIVAHFPM*QSR.E	2 2 2
	step04.1583.1583.3	3.5305	0.1447	2711.262	2710.197	1	832.5	30.7%	1	K.FLDALELSQSPMLLELMTEVLCR.E	3 3 3
	step04.19648.19648.2	4.8972	0.4071	1446.541	1445.7283	1	1724.9	81.8%	5	K.NLLIFENLIDLK.R	2 2 2
	step02.16317.16317.2	3.4148	0.3696	1609.45	1609.8276	1	1201.6	79.2%	2	R.YNFPVEVEVPMER.K	2 2 2
	step04.16244.16244.2	3.8347	0.3725	1680.785	1679.9408	1	853.4	61.5%	4	K.LVINTEEVFRPYAK.H	2 2 2
	step05.15960.15960.2	2.8415	0.2768	895.833	895.14453	2	420.1	91.7%	1	R.LLNFLM*K.H	2 2 2
	step02.9600.9600.2	2.3598	0.2891	1024.011	1024.146	3	617.8	71.4%	1	K.DCLSIPYR.L	2 2 2
	step03.17736.17736.2	5.0202	0.5571	1646.704	1646.9008	1	1840.9	80.8%	2	R.KNILEESLCELVAK.Q	2 2 2
	step04.17268.17268.2	4.5635	0.431	2085.751	2086.3274	1	992.9	64.7%	3	R.ELLNPVVEFVSHPSTTCR.E	2 2 2
	step03.18871.18871.2	4.8902	0.458	2119.975	2120.4783	1	2284.8	69.4%	2	K.DVLIQGLIDENPGLQLIIR.N	2 2 2
	step02.19544.19544.3	6.2852	0.4481	2121.609	2120.4783	1	3046.6	50.0%	2	K.DVLIQGLIDENPGLQLIIR.N	3 3 3
	step05.15935.15935.2	3.2696	0.4148	1219.591	1219.455	1	941.5	80.0%	1	R.LLALNSLYSPK.I	2 2 2
	step03.10838.10838.2	4.3403	0.5817	1918.683	1919.002	1	732.8	62.5%	2	R.ATQQQHDFTLTQTADGR.S	2 2 2
	step03.17157.17157.3	5.874	0.5042	3236.426	3236.447	1	1420.8	36.2%	1	R.SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK.R	3 3 3
	step03.13794.13794.2	3.3767	0.3093	1136.451	1136.2828	1	1381.6	83.3%	2	R.HGDLPDIQIK.H	2 2 2
	step05.19323.19323.2	3.3079	0.4172	1340.291	1340.5922	1	605.1	81.8%	2	K.QLFSSLFSGILK.E	2 2 2
	step02.15105.15105.2	3.3127	0.1726	957.187	957.14923	1	657.7	92.9%	2	R.LLEEALLR.L	2 2 2
	step02.18764.18764.2	5.7581	0.4636	1905.819	1905.1813	1	3000.2	78.1%	2	K.LLLQGEADQSLLTFIDK.A	2 2 2
	step06.21887.21887.2	4.6996	0.472	2181.867	2182.5017	1	2210.3	66.7%	3	K.LQSVQALTEIQEFISFISK.Q	2 2 2
	step04.13881.13881.2	2.5616	0.3538	1018.479	1018.15125	1	625.1	92.9%	2	R.LLNTWTNR.Y	2 2 2
	step02.19373.19373.2	4.2842	0.3806	1734.364	1734.9785	1	1398.8	84.6%	2	K.MDPMNIWDDIITNR.C	2 2 2
	step02.17627.17627.2	2.8695	0.1845	1768.041	1766.9774	1	806.2	65.4%	1	K.MDPMNIWDDIITNR.C	2 2 2
	step03.662.662.2	2.209	0.1172	3056.348	3055.902	1	543.6	22.5%	1	K.IEEKLT#PLPEDNS#MNVDQDGDPS#DR.M	2 2 2
	step02.5682.5682.2	3.5913	0.4906	2332.408	2332.4016	1	451.0	45.0%	2	K.LTPLPEDNSM*NVDQDGDPSDR.M	2 2 2
	step02.15363.15363.2	4.677	0.4078	1807.38	1806.9733	1	2577.9	78.6%	1	R.MEVQEQEEDISSLIR.S	2 2 2
	step01.9988.9988.1	2.2353	0.1301	1161.56	1160.3308	18	370.2	58.3%	4	K.MKMIDS#ARK.Q	1 1 1
	step02.15644.15645.2	4.0544	0.5667	1768.699	1769.931	1	1929.6	76.7%	2	K.TVSLLDENNVSSYLSK.N	2 2
	step04.13040.13040.2	2.7664	0.289	920.294	920.0907	1	587.8	92.9%	2	K.VIAGLYQR.A	2 2 2
	step02.16396.16396.2	4.0227	0.4338	2632.799	2633.8894	1	1608.2	54.3%	1	R.KEEENASVIDSAELQAYPALVVEK.M	2 2
	step06.2117.2117.3	5.1783	0.5193	3004.42	3004.383	1	1380.2	31.7%	2	K.SKLDQGGVIQDFINALDQLSNPELLFK.D	3 3 3
	step04.2548.2548.2	5.2018	0.5312	2789.033	2789.1326	1	1401.4	47.9%	4	K.LDQGGVIQDFINALDQLSNPELLFK.D	2 2 2
	step03.2489.2489.3	5.5261	0.5041	2789.584	2789.1326	1	1647.4	40.6%	2	K.LDQGGVIQDFINALDQLSNPELLFK.D	3 3 3
	step04.13126.13126.1	1.8016	0.1411	840.481	840.9888	1	455.3	75.0%	1	K.FIQTFGK.E	1 1 1
	step02.18998.18998.2	4.8524	0.5181	1638.8	1637.9225	1	2664.4	84.6%	1	K.LSDFNDITNMLLLK.M	2 2 2
	step02.17644.17644.2	4.499	0.4418	1654.171	1653.9219	1	1878.4	84.6%	2	K.LSDFNDITNM*LLLK.M	2 2 2
	step02.8067.8067.2	2.7817	0.1997	1391.449	1391.4681	1	569.9	72.7%	1	R.NELEIPGQYDGR.G	2 2 2
*	step04.170.170.2	5.2593	0.5015	1629.678	1629.9216	1	1550.0	80.8%	4	R.LGLIEWLENTVTLK.D	2
*	step02.13806.13806.2	3.3447	0.4193	1421.657	1421.5991	1	1024.8	81.8%	2	K.DLLLNTMSQEEK.A	2
	step03.14443.14443.2	2.2409	0.1852	1508.346	1508.6932	1	783.5	63.6%	1	R.APPCEYKDWLTK.M	2 2 2
	step04.14854.14854.2	2.5301	0.1162	1344.34	1344.5847	2	364.8	70.0%	1	K.HDVGAYM*LMYK.G	2 2 2
	step03.16047.16047.2	2.427	0.4105	1322.69	1323.5436	1	1070.5	86.4%	1	R.MSTSPEAFLALR.S	2 2 2
	step02.17742.17742.2	3.7285	0.4179	1637.714	1637.8793	1	1198.0	82.1%	2	R.SDPGLLTNTMDVFVK.E	2 2 2
	step03.15902.15902.2	4.4967	0.5086	2122.875	2122.4014	1	1841.6	65.8%	3	K.LAGANPAVITCDELLLGHEK.A	2 2 2

Similarities: gi|126032350|ref|NP_0(67:2)
gi|113430845|ref|XP_0(63:6)

gi|169217473|ref|XP_0

20.2%

168

19270

5.5

PREDICTED: anaphase-promoting complex subunit 1-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15308.15308.2	3.242	0.3061	1481.603	1481.6531	1	1052.4	63.6%	2	R.EMSETSELWQIK.L	2 2 2
step04.17280.17280.2	3.171	0.274	1097.787	1098.2762	1	1162.8	93.8%	4	K.LVLEFFSSR.S	2 2 2
step04.17683.17684.2	4.0639	0.4682	1481.744	1481.7842	1	1314.1	83.3%	2	R.GLFMNSEFLPVVK.C	2 2 2
step04.16990.16990.2	3.2958	0.3873	1497.442	1497.7836	1	1382.7	83.3%	2	R.GLFM*NSEFLPVVK.C	2 2 2

Similarities: gi|12056971|ref|NP_07(4:0)
gi|310118949|ref|XP_0(4:0)

gi|4506629|ref|NP_000

20.1%

159

17752

11.7

60S ribosomal protein L29 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.20292.20292.2	3.0392	0.1839	1917.741	1918.0834	1	385.0	43.8%	1	K.MQANNAKAMS#ARAEAIK.A	2
*	step04.8774.8774.2	4.8575	0.4033	1379.527	1378.559	1	958.2	82.1%	4	K.AQAAAPASVPAQAPK.R	2

gi|54112119|ref|NP_00

20.1%

144

16020

4.8

splicing factor 3B subunit 1 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14295.14295.3	4.3582	0.4259	3066.966	3067.1804	1	999.7	33.0%	2	K.KAALDEAQGVGLDSTGYYDQEIYGGSDSR.F	3 3
	step02.13832.13832.2	3.3645	0.5194	2938.408	2939.0076	1	588.3	37.0%	1	K.AALDEAQGVGLDSTGYYDQEIYGGSDSR.F	2 2

Similarities: gi|54112117|ref|NP_03(2:0)

gi|4502643|ref|NP_001

20.0%

531

58024

6.7

T-complex protein 1 subunit zeta isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18614.18614.2	5.5799	0.5404	2545.253	2545.8252	1	2532.9	60.4%	2	K.VATAQDDITGDGTTSNVLIIGELLK.Q	2
*	step02.18615.18615.3	3.6057	0.3196	2546.45	2545.8252	1	1573.9	33.3%	1	K.VATAQDDITGDGTTSNVLIIGELLK.Q	3
	step04.1584.1584.3	4.3194	0.4233	2207.058	2207.5527	1	853.4	35.0%	2	K.VHAELADVLTEAVVDSILAIK.K	3 3
	step03.12180.12180.2	3.9057	0.2831	1666.559	1666.8507	1	1040.4	71.4%	1	K.VCGDSDKGFVVINQK.G	2 2
	step02.17123.17123.2	2.5035	0.1754	1263.597	1263.4214	1	1031.9	81.8%	2	K.GIDPFSLDALSK.E	2 2
	step04.19758.19758.2	4.3423	0.3741	1768.826	1769.1206	1	1488.3	71.9%	3	R.AQLGVQAFADALLIIPK.V	2 2
	step02.15375.15375.2	5.402	0.3928	1763.819	1762.9849	1	2405.4	80.0%	2	K.VLAQNSGFDLQETLVK.I	2 2

Similarities: gi|58331171|ref|NP_00(5:2)

gi|23308577|ref|NP_00

19.9%

533

56651

6.7

D-3-phosphoglycerate dehydrogenase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8955.8955.2	3.6257	0.4075	1299.545	1299.4984	1	2024.3	86.4%	1	K.ILQDGGLQVVEK.Q	2
*	step02.7695.7695.2	3.3234	0.3193	1489.873	1489.5702	1	1063.8	75.0%	2	R.AGTGVDNVDLEAATR.K	2
*	step05.16270.16270.1	1.9478	0.2823	899.677	900.1009	1	167.7	62.5%	2	K.TLGILGLGR.I	1
*	step05.16254.16254.2	3.0795	0.1786	900.493	900.1009	1	967.8	93.8%	2	K.TLGILGLGR.I	2
*	step02.13438.13438.2	3.0628	0.3189	1100.423	1100.2506	1	1530.2	85.0%	2	R.GGIVDEGALLR.A	2
*	step03.13610.13610.2	2.8084	0.4246	1346.664	1346.5552	1	738.6	70.8%	2	K.GTIQVITQGTSLK.N	2
*	step05.17753.17753.2	2.522	0.4135	1625.911	1626.916	1	310.5	56.7%	2	K.NAGNCLSPAVIVGLLK.E	2
*	step03.18159.18159.1	2.0433	0.3212	986.83	987.22015	1	291.2	78.6%	1	R.DLPLLLFR.T	1
*	step03.18157.18157.2	2.2194	0.2799	987.459	987.22015	1	692.5	85.7%	1	R.DLPLLLFR.T	2
*	step03.19579.19579.2	6.2315	0.5146	2274.003	2273.6597	1	1959.3	71.4%	2	R.TQTSDPAMLPTMIGLLAEAGVR.L	2

gi|15431310|ref|NP_00

19.9%

472

51622

5.2

keratin, type I cytoskeletal 14 [Homo sapiens] keratin 14; cytokeratin 14 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.11058.11058.2	3.5874	0.6031	1427.762	1426.514	1	1084.4	67.9%	2	R.APSTYGGGLSVSSSR.F	2
step04.14545.14545.2	2.3952	0.1011	1064.806	1065.2478	1	1066.5	87.5%	2	R.LASYLDKVR.A	2 2 2 2 2
step02.13582.13582.2	2.9821	0.4259	1030.23	1030.2002	1	1047.2	93.8%	4	R.VLDELTLAR.A	2 2 2 2
step02.20410.20410.2	2.3723	0.2241	2139.884	2140.4402	13	164.2	41.2%	4	R.ADLEM*QIESLKEELAYLK.K	2
step02.16371.16371.2	3.2216	0.4059	1173.554	1173.2554	1	1215.9	81.2%	4	K.DAEEWFFTK.T	2
step04.670.670.3	4.4724	0.3732	2740.98	2740.1433	1	986.5	35.2%	2	R.YCMQLAQIQEMIGSVEEQLAQLR.C	3
step03.13960.13960.2	3.1251	0.3723	1380.598	1380.5316	1	884.8	80.0%	4	K.TRLEQEIATYR.R	2 2 2 2 2 2

U	gi\|30089997\|ref\|NP_81	4	7	19.9%	387	43236	6.1	actin-like protein 6A isoform 2 [Homo sapiens]
U	gi\|4757718\|ref\|NP_004	4	7	17.9%	429	47461	5.6	actin-like protein 6A isoform 1 [Homo sapiens]
U	gi\|30089999\|ref\|NP_82	4	7	19.9%	387	43236	6.1	actin-like protein 6A isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.16350.16350.2	5.2426	0.5473	2025.661	2026.2622	1	709.9	58.8%	2	K.SEASLHPVLMSEAPWNTR.A	2
step06.20602.20602.2	2.2791	0.1342	2274.149	2274.6594	6	259.9	35.3%	1	K.LTELMFEHYNIPAFFLCK.T	2
step04.14689.14689.2	2.8788	0.4553	1121.407	1121.2715	4	443.6	65.0%	2	K.TAVLTAFANGR.S	2
step05.16198.16198.3	7.6091	0.4896	3093.94	3093.48	1	2850.6	38.8%	2	R.STGLILDSGATHTTAIPVHDGYVLQQGIVK.S	3

U	gi\|10800140\|ref\|NP_06	5	19	19.8%	126	13950	10.3	histone H2B type 1-B [Homo sapiens]
U	gi\|4504277\|ref\|NP_003	5	19	19.8%	126	13920	10.3	histone H2B type 2-E [Homo sapiens]
U	gi\|28173554\|ref\|NP_77	5	19	19.8%	126	13908	10.3	histone H2B type 3-B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.14054.14054.2	2.7376	0.2361	1280.166	1280.4504	1	829.6	83.3%	2	R.KESYSIYVYK.V	2
step04.18811.18811.2	4.981	0.5479	1745.1	1745.0166	1	2180.7	78.6%	6	K.AMGIMNSFVNDIFER.I	2 2
step03.16980.16980.2	4.3022	0.1707	1760.545	1761.016	1	1996.1	78.6%	2	K.AMGIM*NSFVNDIFER.I	2 2
step03.17802.17802.2	4.6268	0.2368	1760.752	1761.016	1	2555.1	85.7%	2	K.AM*GIMNSFVNDIFER.I	2 2
step03.16410.16410.2	4.899	0.5424	1776.676	1777.0154	1	1700.8	75.0%	7	K.AMGIMNSFVNDIFER.I	2 2

Similarities: gi|10800138|ref|NP_06(4:1)

gi|126032350|ref|NP_0

125

19.7%

4097

465505

7.2

DNA-dependent protein kinase catalytic subunit isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.19008.19008.2	4.9894	0.563	2621.1	2620.9768	1	1061.2	47.9%	2	R.GLGQECVLSSSPAVLALQTSLVFSR.D	2 2 2
step04.17581.17581.2	2.3443	0.1261	1285.819	1284.6067	1	504.0	75.0%	1	K.CKIPALDLLIK.L	2 2 2
step03.20211.20211.2	4.6191	0.5528	2859.357	2859.2495	1	715.9	45.8%	3	K.VYELLGLLGEVHPSEMINNAENLFR.A	2 2 2
step03.20233.20234.3	6.6657	0.5783	2859.518	2859.2495	1	1952.3	44.8%	5	K.VYELLGLLGEVHPSEMINNAENLFR.A	3 3 3
step03.18820.18820.2	3.1997	0.3509	2874.505	2875.2488	1	272.6	35.4%	1	K.VYELLGLLGEVHPSEM*INNAENLFR.A	2 2 2
step05.14724.14724.2	2.4297	0.1602	971.375	971.2125	1	1004.1	75.0%	2	K.LPVLAGCLK.G	2 2 2
step04.16987.16987.2	4.0427	0.3775	1241.4	1240.4244	1	1080.8	80.0%	2	K.GLSSLLCNFTK.S	2 2 2
step04.12260.12260.2	2.3448	0.3369	934.246	934.0742	1	760.2	100.0%	1	R.YAVPSAGLR.L	2 2 2
step03.17482.17484.2	3.8052	0.4213	1150.535	1150.3495	1	1739.1	85.0%	1	K.AALSALESFLK.Q	2 2 2
step04.15607.15607.1	1.9776	0.2194	832.841	833.053	11	692.3	71.4%	1	K.VFLALAAK.G	1 1 1
step05.14940.14940.2	3.7221	0.4287	1444.056	1444.7255	1	1635.0	73.1%	1	R.VVQMLGSLGGQINK.N	2 2 2
step06.21038.21038.2	2.9556	0.4714	1706.118	1705.1	1	710.8	76.9%	2	R.EMKPVIFLDVFLPR.V	2 2 2
step06.20617.20617.2	2.8549	0.4561	1721.727	1721.0994	1	234.2	65.4%	1	R.EM*KPVIFLDVFLPR.V	2 2 2
step03.11295.11295.2	4.4342	0.3898	2100.412	2100.3613	1	791.6	66.7%	2	K.ATQMPEGGQGAPPMYQLYK.R	2 2 2
step04.1362.1362.3	4.3252	0.3625	2947.626	2946.2988	1	1317.1	32.7%	1	K.KFESQDTVALLEAILDGIVDPVDSTLR.D	3 3
step03.1748.1748.2	3.9223	0.4685	2819.051	2818.1257	1	757.3	38.0%	1	K.FESQDTVALLEAILDGIVDPVDSTLR.D	2 2
step06.19043.19043.2	3.7954	0.5807	1374.401	1374.6118	1	1820.2	81.8%	1	R.LYSLALHPNAFK.R	2 2 2
step04.18181.18181.2	3.1208	0.3418	1617.605	1617.9043	1	279.6	71.4%	3	R.GFPPSASLCLLDLVK.W	2 2 2
step03.20013.20013.2	5.5097	0.5391	2076.695	2077.4321	1	1472.1	63.9%	3	K.AVAFFLESIAMHDIIAAEK.C	2 2 2
step03.18910.18910.2	5.0052	0.4919	2093.366	2093.4316	1	702.5	58.3%	2	K.AVAFFLESIAM*HDIIAAEK.C	2 2 2
step02.16952.16952.2	4.7376	0.4861	1984.933	1985.2467	1	1644.4	75.0%	2	R.IM*EFTTTLLNTSPEGWK.L	2 2 2
step03.12794.12794.2	2.2789	0.1114	996.463	997.1303	16	510.6	71.4%	1	K.DILETHLR.E	2 2 2
step02.19038.19038.2	2.5197	0.3624	1990.448	1991.2528	1	537.6	47.1%	1	K.NLDLAVLELMQSSVDNTK.M	2 2 2
step02.16908.16908.2	3.0203	0.4523	2006.678	2007.2522	1	555.6	58.8%	2	K.NLDLAVLELM*QSSVDNTK.M	2 2 2
step06.18589.18589.2	2.5317	0.2225	1211.499	1211.4377	2	500.0	66.7%	2	K.LATTILQHWK.K	2 2 2
step05.15814.15814.2	2.2427	0.2531	946.556	946.233	1	1550.7	100.0%	1	K.M*AVLALLAK.I	2 2 2
step06.19374.19374.2	3.4961	0.4303	1785.554	1785.1035	1	543.3	64.3%	3	R.VLEQLIVAHFPM*QSR.E	2 2 2
step04.1583.1583.3	3.5305	0.1447	2711.262	2710.197	1	832.5	30.7%	1	K.FLDALELSQSPMLLELMTEVLCR.E	3 3 3
step04.19648.19648.2	4.8972	0.4071	1446.541	1445.7283	1	1724.9	81.8%	5	K.NLLIFENLIDLK.R	2 2 2
step02.16317.16317.2	3.4148	0.3696	1609.45	1609.8276	1	1201.6	79.2%	2	R.YNFPVEVEVPMER.K	2 2 2
step04.16244.16244.2	3.8347	0.3725	1680.785	1679.9408	1	853.4	61.5%	4	K.LVINTEEVFRPYAK.H	2 2 2
step05.15960.15960.2	2.8415	0.2768	895.833	895.14453	2	420.1	91.7%	1	R.LLNFLM*K.H	2 2 2
step02.9600.9600.2	2.3598	0.2891	1024.011	1024.146	3	617.8	71.4%	1	K.DCLSIPYR.L	2 2 2
step03.17736.17736.2	5.0202	0.5571	1646.704	1646.9008	1	1840.9	80.8%	2	R.KNILEESLCELVAK.Q	2 2 2
step04.17268.17268.2	4.5635	0.431	2085.751	2086.3274	1	992.9	64.7%	3	R.ELLNPVVEFVSHPSTTCR.E	2 2 2
step03.18871.18871.2	4.8902	0.458	2119.975	2120.4783	1	2284.8	69.4%	2	K.DVLIQGLIDENPGLQLIIR.N	2 2 2
step02.19544.19544.3	6.2852	0.4481	2121.609	2120.4783	1	3046.6	50.0%	2	K.DVLIQGLIDENPGLQLIIR.N	3 3 3
step05.15935.15935.2	3.2696	0.4148	1219.591	1219.455	1	941.5	80.0%	1	R.LLALNSLYSPK.I	2 2 2
step03.10838.10838.2	4.3403	0.5817	1918.683	1919.002	1	732.8	62.5%	2	R.ATQQQHDFTLTQTADGR.S	2 2 2
step03.17157.17157.3	5.874	0.5042	3236.426	3236.447	1	1420.8	36.2%	1	R.SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK.R	3 3 3
step03.13794.13794.2	3.3767	0.3093	1136.451	1136.2828	1	1381.6	83.3%	2	R.HGDLPDIQIK.H	2 2 2
step05.19323.19323.2	3.3079	0.4172	1340.291	1340.5922	1	605.1	81.8%	2	K.QLFSSLFSGILK.E	2 2 2
step02.15105.15105.2	3.3127	0.1726	957.187	957.14923	1	657.7	92.9%	2	R.LLEEALLR.L	2 2 2
step02.18764.18764.2	5.7581	0.4636	1905.819	1905.1813	1	3000.2	78.1%	2	K.LLLQGEADQSLLTFIDK.A	2 2 2
step06.21887.21887.2	4.6996	0.472	2181.867	2182.5017	1	2210.3	66.7%	3	K.LQSVQALTEIQEFISFISK.Q	2 2 2
step04.13881.13881.2	2.5616	0.3538	1018.479	1018.15125	1	625.1	92.9%	2	R.LLNTWTNR.Y	2 2 2
step02.19373.19373.2	4.2842	0.3806	1734.364	1734.9785	1	1398.8	84.6%	2	K.MDPMNIWDDIITNR.C	2 2 2
step02.17627.17627.2	2.8695	0.1845	1768.041	1766.9774	1	806.2	65.4%	1	K.MDPMNIWDDIITNR.C	2 2 2
step03.662.662.2	2.209	0.1172	3056.348	3055.902	1	543.6	22.5%	1	K.IEEKLT#PLPEDNS#MNVDQDGDPS#DR.M	2 2 2
step02.5682.5682.2	3.5913	0.4906	2332.408	2332.4016	1	451.0	45.0%	2	K.LTPLPEDNSM*NVDQDGDPSDR.M	2 2 2
step02.15363.15363.2	4.677	0.4078	1807.38	1806.9733	1	2577.9	78.6%	1	R.MEVQEQEEDISSLIR.S	2 2 2
step01.9988.9988.1	2.2353	0.1301	1161.56	1160.3308	18	370.2	58.3%	4	K.MKMIDS#ARK.Q	1 1 1
step02.15644.15645.2	4.0544	0.5667	1768.699	1769.931	1	1929.6	76.7%	2	K.TVSLLDENNVSSYLSK.N	2 2
step04.13040.13040.2	2.7664	0.289	920.294	920.0907	1	587.8	92.9%	2	K.VIAGLYQR.A	2 2 2
step02.16396.16396.2	4.0227	0.4338	2632.799	2633.8894	1	1608.2	54.3%	1	R.KEEENASVIDSAELQAYPALVVEK.M	2 2
step06.2117.2117.3	5.1783	0.5193	3004.42	3004.383	1	1380.2	31.7%	2	K.SKLDQGGVIQDFINALDQLSNPELLFK.D	3 3 3
step04.2548.2548.2	5.2018	0.5312	2789.033	2789.1326	1	1401.4	47.9%	4	K.LDQGGVIQDFINALDQLSNPELLFK.D	2 2 2
step03.2489.2489.3	5.5261	0.5041	2789.584	2789.1326	1	1647.4	40.6%	2	K.LDQGGVIQDFINALDQLSNPELLFK.D	3 3 3
step04.13126.13126.1	1.8016	0.1411	840.481	840.9888	1	455.3	75.0%	1	K.FIQTFGK.E	1 1 1
step02.18998.18998.2	4.8524	0.5181	1638.8	1637.9225	1	2664.4	84.6%	1	K.LSDFNDITNMLLLK.M	2 2 2
step02.17644.17644.2	4.499	0.4418	1654.171	1653.9219	1	1878.4	84.6%	2	K.LSDFNDITNM*LLLK.M	2 2 2
step02.8067.8067.2	2.7817	0.1997	1391.449	1391.4681	1	569.9	72.7%	1	R.NELEIPGQYDGR.G	2 2 2
step03.14443.14443.2	2.2409	0.1852	1508.346	1508.6932	1	783.5	63.6%	1	R.APPCEYKDWLTK.M	2 2 2
step04.14854.14854.2	2.5301	0.1162	1344.34	1344.5847	2	364.8	70.0%	1	K.HDVGAYM*LMYK.G	2 2 2
step03.16047.16047.2	2.427	0.4105	1322.69	1323.5436	1	1070.5	86.4%	1	R.MSTSPEAFLALR.S	2 2 2
step02.17742.17742.2	3.7285	0.4179	1637.714	1637.8793	1	1198.0	82.1%	2	R.SDPGLLTNTMDVFVK.E	2 2 2
step03.15902.15902.2	4.4967	0.5086	2122.875	2122.4014	1	1841.6	65.8%	3	K.LAGANPAVITCDELLLGHEK.A	2 2 2

Similarities: gi|13654237|ref|NP_00(67:0)
gi|113430845|ref|XP_0(63:4)

U	gi\|66346679\|ref\|NP_00	9	15	19.6%	408	44965	8.6	plasminogen activator inhibitor 1 RNA-binding protein isoform 1 [Homo sapiens]
U	gi\|66346685\|ref\|NP_05	9	15	20.7%	387	42427	8.4	plasminogen activator inhibitor 1 RNA-binding protein isoform 4 [Homo sapiens]
U	gi\|66346683\|ref\|NP_00	9	15	20.4%	393	43135	8.4	plasminogen activator inhibitor 1 RNA-binding protein isoform 3 [Homo sapiens]
U	gi\|66346681\|ref\|NP_00	9	15	19.9%	402	44257	8.7	plasminogen activator inhibitor 1 RNA-binding protein isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.16308.16308.2	2.323	0.1874	1351.492	1350.5886	44	372.6	54.2%	1	R.KNPLPPSVGVVDK.K	2
step06.16039.16039.2	2.9614	0.2757	1350.601	1350.5886	1	459.8	70.8%	2	K.NPLPPSVGVVDKK.E	2
step05.13698.13698.2	2.5148	0.2088	977.448	977.1423	1	361.0	71.4%	1	R.AKVEFNIR.K	2
step05.7931.7931.2	3.3499	0.48	2112.45	2113.2136	1	1459.4	70.6%	2	K.SKSEEAHAEDSVMDHHFR.K	2
step04.7338.7338.2	4.9408	0.527	2129.421	2129.2131	1	1215.7	73.5%	2	K.SKSEEAHAEDSVM*DHHFR.K	2
step03.8181.8181.2	4.293	0.4817	1898.704	1897.9631	1	786.7	66.7%	2	K.SEEAHAEDSVMDHHFR.K	2
step03.16492.16492.2	4.6622	0.5002	2088.669	2089.2947	1	1840.2	75.0%	1	R.KPANDITSQLEINFGDLGR.P	2
step02.13906.13906.2	4.0626	0.5157	2105.67	2105.2014	1	987.5	55.0%	3	R.TDKSSASAPDVDDPEAFPALA.-	2
step01.9140.9140.2	2.2221	0.2741	1760.163	1760.8364	1	1071.6	67.6%	1	K.SSASAPDVDDPEAFPALA.-	2

U	gi\|310110326\|ref\|XP_0	3	18	19.6%	168	19300	4.8	PREDICTED: s-phase kinase-associated protein 1-like isoform 2 [Homo sapiens]
U	gi\|310129506\|ref\|XP_0	3	18	20.2%	163	18703	4.7	PREDICTED: s-phase kinase-associated protein 1-like isoform 1 [Homo sapiens]
U	gi\|310129504\|ref\|XP_0	3	18	19.6%	168	19300	4.8	PREDICTED: s-phase kinase-associated protein 1-like isoform 2 [Homo sapiens]
U	gi\|310122854\|ref\|XP_0	3	18	20.2%	163	18703	4.7	PREDICTED: s-phase kinase-associated protein 1-like isoform 1 [Homo sapiens]
U	gi\|310122852\|ref\|XP_0	3	18	19.6%	168	19300	4.8	PREDICTED: s-phase kinase-associated protein 1-like isoform 2 [Homo sapiens]
U	gi\|310110328\|ref\|XP_0	3	18	20.2%	163	18703	4.7	PREDICTED: s-phase kinase-associated protein 1-like isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17265.17265.2	3.6014	0.2169	1762.985	1762.9435	1	1106.7	69.2%	4	K.RTDDIPVWDQEFLK.V	2 2
step02.20526.20526.3	4.7406	0.4458	2137.834	2137.461	1	2072.5	50.0%	1	K.VDQGTLFELILAANYLDIK.G	3 3
step06.21061.21061.2	4.7883	0.5134	2138.532	2137.461	1	1906.0	61.1%	13	K.VDQGTLFELILAANYLDIK.G	2 2

Similarities: gi|25777711|ref|NP_00(3:0)

gi|20270253|ref|NP_11

19.3%

757

86360

5.2

activating signal cointegrator 1 complex subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18719.18719.2	3.6423	0.332	1561.534	1561.7179	1	1057.5	87.5%	2	K.DNIPALVEEYLER.A	2
*	step03.18812.18812.2	3.8819	0.505	2041.087	2040.307	1	575.0	55.9%	2	R.ATFVANDLDWLLALPHDK.F	2
*	step02.7882.7883.2	4.8902	0.5279	1866.911	1867.0702	1	1101.4	71.9%	2	R.KFDEGVASAPEVVDM*QK.R	2
*	step05.17878.17878.2	2.7504	0.335	983.512	983.1884	1	615.8	85.7%	1	R.SVFLTFLR.M	2
*	step06.21410.21410.3	3.8718	0.2549	2685.443	2686.0125	2	590.5	28.4%	1	K.DHFISPSAFGEILYNNFLFDIPK.I	3
*	step03.18106.18106.2	2.8615	0.3793	1178.512	1178.4395	1	1049.1	88.9%	1	K.ILDLCVLFGK.G	2
*	step03.338.339.2	6.0056	0.5129	2896.924	2897.14	1	3043.9	58.0%	3	R.DYDALFPVAEDISLLQQASSVLDETR.T	2
*	step03.324.326.3	6.2379	0.5839	2897.472	2897.14	1	2730.8	44.0%	2	R.DYDALFPVAEDISLLQQASSVLDETR.T	3
*	step02.19768.19768.2	4.0291	0.4895	1908.621	1909.0886	1	2490.6	75.0%	2	R.TAYILQAVESAWEGVDR.R	2
*	step03.16256.16256.2	3.8671	0.4465	1755.829	1754.84	1	1041.6	73.1%	2	R.HNVFQNDEFDVFSR.D	2

gi|48762932|ref|NP_00

19.2%

548

59621

5.6

T-complex protein 1 subunit theta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14672.14672.2	3.2841	0.4764	1308.378	1308.424	1	955.8	85.0%	1	K.HFSGLEEAVYR.N	2
*	step02.16079.16079.2	3.2222	0.2383	1334.759	1334.546	1	1480.4	81.8%	1	K.LFVTNDAATILR.E	2
*	step02.15982.15982.2	4.4176	0.5696	1833.776	1833.0889	1	992.9	66.7%	1	K.IAVYSCPFDGMITETK.G	2
*	step02.13542.13542.2	3.8216	0.4577	1848.707	1849.0883	1	1210.0	73.3%	2	K.IAVYSCPFDGM*ITETK.G	2
*	step02.8096.8096.2	3.5117	0.503	1373.264	1373.5375	1	1576.5	85.7%	2	K.AIADTGANVVVTGGK.V	2
*	step04.14108.14108.2	2.6926	0.1873	925.442	925.13074	1	1027.6	91.7%	2	K.YNIM*LVR.L	2
*	step04.10851.10851.2	2.3652	0.3247	886.419	886.0311	1	585.7	81.2%	3	K.TVGATALPR.L	2
*	step02.14324.14324.2	3.7047	0.3654	1151.571	1151.296	1	1439.8	94.4%	2	K.FAEAFEAIPR.A	2
*	step02.17033.17033.2	2.2837	0.226	1555.853	1555.775	1	1008.2	76.9%	1	K.DM*LEAGILDTYLGK.Y	2
*	step04.13570.13570.2	3.5165	0.4562	1128.901	1129.3351	1	875.8	90.0%	4	K.LATNAAVTVLR.V	2

gi|24307971|ref|NP_05

19.2%

464

54003

6.8

serine/threonine-protein kinase 38-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17665.17665.2	4.8591	0.5193	2121.002	2120.3506	1	1611.8	68.8%	1	K.LTLENFYSNLILQHEER.E	2
*	step04.6741.6741.2	3.0505	0.1831	1948.519	1949.1696	1	575.2	50.0%	2	K.KLEVAMEEEGLADEEKK.L	2
	step02.14492.14492.2	3.8147	0.4756	1211.491	1211.3832	1	1675.3	90.0%	2	K.LSDFGLCTGLK.K	2 2
*	step05.14567.14567.2	5.2249	0.5813	2079.554	2079.2388	1	911.0	67.6%	1	R.NLTHNPPSDFSFQNMNSK.R	2
*	step05.17370.17370.2	2.4963	0.1873	1726.689	1726.8746	1	424.6	53.8%	1	K.GHPFFEGVDWEHIR.E	2
*	step05.16644.16644.2	3.7625	0.3545	1564.044	1564.765	1	1317.7	81.8%	2	K.SKDWVFLNYTYK.R	2

Similarities: gi|6005814|ref|NP_009(1:5)

U	gi\|47458043\|ref\|NP_99	6	10	19.2%	385	42984	7.2	armadillo repeat-containing protein 8 isoform 3 [Homo sapiens]
U	gi\|47458045\|ref\|NP_05	6	10	19.2%	385	42984	7.2	armadillo repeat-containing protein 8 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15660.15660.2	3.9865	0.4731	1123.022	1123.3737	1	1739.1	90.0%	2	K.ANLIVLGAVPR.L	2 2
step04.16040.16040.2	3.6187	0.4668	2037.672	2038.2266	1	1483.3	71.4%	2	R.YTQEYICQIFSHCCK.G	2 2
step03.11846.11846.2	2.4015	0.1645	1362.568	1361.5901	1	439.0	72.7%	1	R.DKPIEMQLTSAK.C	2 2
step02.18100.18100.2	4.0401	0.4883	2145.715	2146.383	1	1245.0	63.9%	1	R.VEGAETLAYLIEPDVELQR.I	2 2
step02.18123.18123.3	3.514	0.323	2145.749	2146.383	1	1347.6	40.3%	1	R.VEGAETLAYLIEPDVELQR.I	3 3
step06.21238.21238.2	4.4458	0.517	1938.933	1939.2643	1	701.2	62.5%	3	R.IASITDHLIAM*LADYFK.Y	2 2

Similarities: gi|32526896|ref|NP_05(6:0)

U	gi\|20336746\|ref\|NP_61	3	4	19.2%	369	39183	9.8	core histone macro-H2A.1 isoform 1 [Homo sapiens]
U	gi\|93141020\|ref\|NP_00	3	4	19.1%	371	39489	9.8	core histone macro-H2A.1 isoform 2 [Homo sapiens]
U	gi\|93141018\|ref\|NP_61	3	4	19.1%	372	39617	9.8	core histone macro-H2A.1 isoform 3 [Homo sapiens]
U	gi\|4758496\|ref\|NP_004	3	4	19.1%	371	39489	9.8	core histone macro-H2A.1 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.2640.2640.3	3.9931	0.1145	2978.38	2977.4675	1	1085.7	30.4%	1	R.IGVGAPVYMAAVLEYLTAEILELAGNAAR.D	3
step02.12423.12423.2	2.7372	0.0819	2127.605	2128.2366	1	379.4	38.1%	1	K.AASADSTTEGTPADGFTVLSTK.S	2
step06.17954.17954.2	4.1954	0.383	1816.709	1817.0391	1	1431.7	63.2%	2	K.NGPLEVAGAAVSAGHGLPAK.F	2

gi|223890243|ref|NP_0

19.2%

214

24604

10.1

60S ribosomal protein L10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18060.18060.3	4.8799	0.4642	3083.055	3084.311	1	1959.7	33.7%	2	K.VDEFPLCGHMVSDEYEQLSSEALEAAR.I	3
*	step02.18089.18089.2	3.801	0.4968	3083.828	3084.311	1	1123.5	42.3%	1	K.VDEFPLCGHMVSDEYEQLSSEALEAAR.I	2
*	step02.17472.17474.3	5.4598	0.5542	3099.679	3100.3103	1	1690.1	33.7%	1	K.VDEFPLCGHM*VSDEYEQLSSEALEAAR.I	3
*	step02.16035.16035.2	4.4443	0.5192	1701.681	1701.8387	1	1295.2	73.1%	2	K.FNADEFEDMVAEKR.L	2
*	step02.13625.13625.2	3.3186	0.3344	1718.45	1717.8383	1	374.7	65.4%	1	K.FNADEFEDM*VAEKR.L	2

gi|54112121|ref|NP_03

19.1%

1217

135577

5.3

splicing factor 3B subunit 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17062.17062.2	3.671	0.4683	1299.571	1299.5668	1	1707.5	88.9%	2	-.MFLYNLTLQR.A	2
*	step05.15956.15956.2	3.5144	0.4835	1315.627	1315.5662	1	1296.9	88.9%	2	-.M*FLYNLTLQR.A	2
7	step03.15396.15396.1	2.0486	0.1443	756.736	756.9565	3	335.2	80.0%	2	K.ILELLR.P	1 1 1 1 1 1 1 1 1
7	step03.15391.15391.2	2.2222	0.1225	757.284	756.9565	1	366.8	90.0%	1	K.ILELLR.P	2 2 2 2 2 2 2 2 2
*	step03.13084.13084.2	2.8331	0.3203	962.263	962.1893	1	951.7	93.8%	1	R.AVMISAIEK.Q	2
*	step03.10809.10809.2	2.6046	0.3218	978.371	978.1887	1	882.6	87.5%	2	R.AVM*ISAIEK.Q	2
*	step04.14978.14978.2	2.6002	0.1825	890.805	891.09247	1	469.5	91.7%	2	K.LVYILNR.D	2
*	step02.8970.8970.2	2.8649	0.3718	1490.841	1489.6101	1	711.6	65.4%	1	R.TVLDPVTGDLSDTR.T	2
*	step03.11169.11169.2	3.0434	0.332	1425.748	1424.6298	1	583.0	70.8%	2	R.M*QGQEAVLAMSSR.S	2
*	step05.17412.17412.2	4.7941	0.4917	1922.62	1922.2185	1	922.2	59.4%	2	K.LGAVFNQVAFPLQYTPR.K	2
*	step01.6155.6155.2	2.4691	0.1684	1840.074	1839.9404	2	752.7	56.7%	2	K.QQMAEEM*VEAAGEDER.E	2
*	step02.20174.20174.3	5.843	0.4096	2535.12	2534.8691	1	2330.4	45.7%	2	R.ELAAEMAAAFLNENLPESIFGAPK.A	3
*	step02.20171.20171.2	5.6025	0.4703	2536.006	2534.8691	1	839.3	47.8%	2	R.ELAAEMAAAFLNENLPESIFGAPK.A	2
*	step02.19031.19031.2	2.7005	0.2451	2550.004	2550.8687	1	846.4	41.3%	1	R.ELAAEM*AAAFLNENLPESIFGAPK.A	2
*	step02.19042.19042.3	3.9079	0.3093	2550.65	2550.8687	1	1208.7	37.0%	1	R.ELAAEM*AAAFLNENLPESIFGAPK.A	3
*	step02.17730.17730.2	5.0666	0.5795	1787.025	1785.977	1	2357.0	80.0%	2	R.FSNTGEDWYVLVGVAK.D	2
*	step03.14107.14107.2	2.846	0.4377	1192.552	1192.345	1	1001.0	90.0%	1	R.SVAGGFVYTYK.L	2
*	step03.14763.14763.2	3.5091	0.4364	1682.718	1682.9015	1	828.9	63.3%	2	K.TPVEEVPAAIAPFQGR.V	2
*	step02.16859.16859.3	3.5727	0.3626	1810.891	1809.957	1	1276.1	46.4%	1	R.NENQLIIFADDTYPR.W	3
*	step02.17060.17060.2	5.4131	0.4478	1926.766	1927.1007	1	2319.0	73.5%	2	R.WVTTASLLDYDTVAGADK.F	2
*	step04.13821.13821.2	3.1851	0.3877	964.727	965.12494	1	864.4	92.9%	2	K.FGNICVVR.L	2
*	step02.14387.14387.2	3.5421	0.2981	2110.363	2111.2693	3	333.9	50.0%	1	K.NVIDGDLCEQFNSMEPNK.Q	2
*	step02.7709.7709.2	3.5901	0.2546	1700.658	1700.8289	1	862.6	67.9%	2	K.NVSEELDRTPPEVSK.K	2

gi|116812577|ref|NP_0

19.1%

392

46514

10.0

putative RNA-binding protein Luc7-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12015.12015.2	2.6697	0.4068	1239.691	1239.4484	1	993.9	70.0%	1	R.AM*LDQLMGTSR.D	2
*	step06.17423.17423.2	4.4404	0.4319	1866.169	1867.0433	1	2599.6	80.0%	2	K.SHLLNCCPHDVLSGTR.M	2
*	step02.13293.13293.2	2.973	0.277	2448.468	2448.6467	1	357.2	38.1%	1	K.VEQLGAEGNVEESQKVMDEVEK.A	2
	step03.14066.14066.2	2.9304	0.1937	2064.543	2065.2202	1	414.7	46.9%	2	R.VCEVCSAYLGLHDNDRR.L	2 2
*	step06.20276.20276.2	3.1	0.3157	1098.137	1098.3226	1	1044.0	93.8%	2	K.LHLGFIEIR.E	2

Similarities: gi|41393554|ref|NP_95(1:4)

gi|7662276|ref|NP_055

19.0%

921

102140

6.5

hypothetical protein LOC9747 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.20584.20584.2	2.6413	0.4315	2405.552	2404.7449	1	363.0	33.3%	1	R.VLFTFPGNLVTSVAGIYFTDNK.G	2
	step06.19520.19522.2	3.6347	0.3538	1100.297	1100.3385	1	936.1	94.4%	1	K.LGPFLLNAVR.W	2 2
	step03.11253.11253.2	2.6005	0.313	958.179	958.13727	2	542.8	85.7%	1	K.IVVQTELR.T	2 2
	step04.17682.17682.2	3.7496	0.2616	2583.892	2583.9468	1	476.1	43.5%	2	K.LGPDGAAFLQIPAEEIPAYMSVHR.L	2 2
	step05.16924.16924.2	3.6028	0.4902	2599.033	2599.946	1	477.3	41.3%	3	K.LGPDGAAFLQIPAEEIPAYM*SVHR.L	2 2
	step04.16978.16978.3	6.547	0.5207	2599.878	2599.946	1	1768.1	42.4%	2	K.LGPDGAAFLQIPAEEIPAYM*SVHR.L	3 3
	step05.16612.16612.2	3.2579	0.4953	1604.745	1604.8477	1	1361.0	83.3%	1	R.YCWMSTGLYIPGR.Q	2 2
*	step03.11395.11395.2	3.9393	0.3956	1430.5	1429.5546	1	965.5	72.7%	2	K.IQIGCHTDDLTR.A	2
*	step05.11980.11980.2	2.3156	0.3231	769.515	768.92737	2	596.8	83.3%	2	R.GPLVINR.C	2
*	step02.13218.13218.2	2.4659	0.3602	1206.408	1206.3268	1	741.7	77.8%	1	K.LGETTLEEWK.R	2
	step02.16824.16824.2	3.215	0.3599	1318.614	1318.527	1	2190.9	85.0%	2	R.LWDEVMQAVAR.L	2 2
	step06.18796.18796.2	2.5021	0.2221	1221.35	1221.3927	3	561.0	70.0%	2	K.GLWGPVHELGR.N	2 2 2
	step05.16008.16010.2	3.2725	0.3291	1137.009	1137.3589	1	848.2	83.3%	1	R.ANIALWPPVR.E	2 2 2
	step05.19940.19940.2	4.0627	0.4502	1818.608	1819.0967	1	1178.7	78.6%	4	K.NLAPFFEAWAWPIQK.E	2 2 2
	step02.16932.16932.2	2.7237	0.3987	1507.888	1507.7118	1	717.0	66.7%	2	K.EVATSLAYLPEWK.E	2 2 2
	step05.15870.15870.2	2.7545	0.2844	1116.367	1116.3583	1	1009.9	81.2%	2	K.LYLLTQMPH.-	2 2

Similarities: gi|310115369|ref|XP_0(5:11)
gi|310115367|ref|XP_0(4:12)
gi|310115365|ref|XP_0(7:9)

gi|40538736|ref|NP_06

19.0%

620

67257

6.8

ran-binding protein 10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12459.12459.2	2.9737	0.468	1626.373	1626.8379	1	555.4	69.2%	1	R.LYPAVNQQETPLPR.S	2
*	step04.14281.14281.2	5.32	0.5237	1642.447	1641.8094	1	2012.6	88.5%	4	K.DKYNYIGLSQGNLR.V	2
	step06.19049.19049.2	3.2045	0.3446	1937.772	1938.2081	1	1206.0	68.8%	2	R.ATHPIPAACGIYYFEVK.I	2 2
	step02.11940.11940.2	2.744	0.2154	1801.248	1800.0106	1	563.5	46.9%	1	R.DGYM*GIGLSAQGVNMNR.L	2 2
	step02.9576.9576.2	3.8391	0.4822	1816.385	1816.01	1	474.5	53.1%	4	R.DGYMGIGLSAQGVNMNR.L	2 2
*	step06.17245.17245.2	3.7561	0.5505	1472.125	1472.6674	1	1549.6	79.2%	2	K.VQGTVHCFPISAR.L	2
*	step02.7932.7932.2	3.543	0.4443	1605.523	1605.7925	1	885.2	76.9%	2	R.MTETPIQEEQASIK.N	2
*	step02.7684.7684.2	3.7212	0.427	1621.482	1621.7919	1	1073.5	76.9%	2	R.M*TETPIQEEQASIK.N	2
*	step02.16618.16618.2	4.3801	0.428	2054.954	2055.3118	1	1891.6	63.9%	2	R.EPVCAALNSAILESQNLPK.Q	2
*	step02.16571.16571.3	4.0769	0.27	2055.447	2055.3118	1	608.6	40.3%	2	R.EPVCAALNSAILESQNLPK.Q	3
*	step04.12090.12090.2	2.8886	0.4027	1025.664	1026.122	1	996.2	88.9%	3	R.AGLGSCSFAR.V	2

Similarities: gi|39812378|ref|NP_00(3:8)

gi|199559779|ref|NP_1

19.0%

538

59374

8.6

coiled-coil domain-containing protein 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.10083.10083.2	2.8036	0.2552	1222.076	1222.3295	1	1123.2	88.9%	2	R.LTQFLEEEGR.T	2
*	step05.10340.10340.2	2.8369	0.4032	1152.456	1153.3801	1	841.4	83.3%	2	R.VQQMVTPPPR.L	2
*	step02.19455.19455.2	4.325	0.486	2315.377	2314.4443	1	1537.4	60.5%	1	K.FLGSDLESEDDEELVEAFLR.R	2
*	step04.16102.16102.2	2.5406	0.2624	2014.648	2015.3192	1	336.0	47.1%	1	R.VNLPVPM*FEDNLGPQLSK.A	2
*	step02.7446.7446.2	5.3119	0.4242	2148.254	2147.2432	1	1347.4	56.8%	1	R.LASTAVESAGVSSAPEGTSPGDR.L	2
*	step03.9996.9996.2	4.1806	0.4648	1541.652	1541.6849	1	1260.3	78.6%	2	R.LGNAGDVCVPQASPR.R	2
	step06.15898.15898.1	2.0668	0.1613	668.645	668.8477	1	215.7	70.0%	1	R.LPTLPK.R	1 1

Similarities: gi|41327749|ref|NP_03(1:6)

U	gi\|23199991\|ref\|NP_68	5	7	19.0%	416	47315	9.7	casein kinase I isoform epsilon [Homo sapiens]
U	gi\|4503093\|ref\|NP_001	5	7	19.0%	416	47315	9.7	casein kinase I isoform epsilon [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14312.14312.2	3.1435	0.162	1217.911	1218.5155	1	1148.4	77.3%	1	K.MMQGGVGIPSIK.W	2
step02.18251.18251.2	2.2156	0.1643	2043.766	2044.3848	7	234.4	31.2%	1	R.KFS#LKTVLLLADQMISR.I	2 2
step04.14474.14474.2	3.3549	0.3291	1589.594	1589.7345	1	924.1	69.2%	2	R.YASINTHLGIEQSR.R	2 2
step06.21362.21362.2	3.4648	0.3663	2932.372	2932.342	1	284.8	37.5%	2	R.RDDLESLGYVLM*YFNLGSLPWQGLK.A	2 2
step02.8420.8420.2	2.8949	0.3629	1418.793	1419.52	1	628.5	85.0%	1	R.FDDKPDYSYLR.Q	2 2

Similarities: gi|20149530|ref|NP_00(4:1)

U	gi\|10800138\|ref\|NP_06	5	18	19.0%	126	13936	10.3	histone H2B type 1-D [Homo sapiens]
U	gi\|66912162\|ref\|NP_00	5	18	19.0%	126	13920	10.3	histone H2B type 2-F isoform a [Homo sapiens]
U	gi\|4504265\|ref\|NP_003	5	18	19.0%	126	13906	10.3	histone H2B type 1-C/E/F/G/I [Homo sapiens]
U	gi\|4504257\|ref\|NP_003	5	18	19.0%	126	13906	10.3	histone H2B type 1-C/E/F/G/I [Homo sapiens]
U	gi\|238624110\|ref\|NP_0	5	18	17.9%	134	14841	10.3	histone H2B type 2-F isoform b [Homo sapiens]
U	gi\|21396484\|ref\|NP_00	5	18	19.0%	126	13906	10.3	histone H2B type 1-C/E/F/G/I [Homo sapiens]
U	gi\|21166389\|ref\|NP_00	5	18	19.0%	126	13906	10.3	histone H2B type 1-C/E/F/G/I [Homo sapiens]
U	gi\|20336752\|ref\|NP_61	5	18	19.0%	126	13936	10.3	histone H2B type 1-D [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.10830.10830.1	1.9636	0.1853	1138.926	1138.2509	1	239.6	68.8%	1	K.ESYSVYVYK.V	1
step04.18811.18811.2	4.981	0.5479	1745.1	1745.0166	1	2180.7	78.6%	6	K.AMGIMNSFVNDIFER.I	2 2
step03.16980.16980.2	4.3022	0.1707	1760.545	1761.016	1	1996.1	78.6%	2	K.AMGIM*NSFVNDIFER.I	2 2
step03.17802.17802.2	4.6268	0.2368	1760.752	1761.016	1	2555.1	85.7%	2	K.AM*GIMNSFVNDIFER.I	2 2
step03.16410.16410.2	4.899	0.5424	1776.676	1777.0154	1	1700.8	75.0%	7	K.AMGIMNSFVNDIFER.I	2 2

Similarities: gi|10800140|ref|NP_06(4:1)

gi|50659095|ref|NP_00

18.9%

783

87344

9.3

nucleolar RNA helicase 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14080.14080.2	4.4504	0.4604	1981.661	1982.0883	1	1965.6	71.9%	2	K.SDKTEEIAEEEETVFPK.A	2
	step02.15560.15560.2	4.4486	0.319	1669.678	1669.8132	1	1200.4	75.0%	3	K.EGAFSNFPISEETIK.L	2 2
*	step05.17327.17327.2	3.1541	0.4485	1221.409	1221.4725	1	937.0	80.0%	1	R.GVTFLFPIQAK.T	2
*	step04.17762.17762.2	3.4705	0.5256	1266.409	1266.51	1	1246.7	90.0%	2	K.TFSFAIPLIEK.L	2
*	step06.17502.17502.2	3.759	0.3428	1165.303	1165.4105	1	1710.0	95.0%	2	R.APQVLVLAPTR.E	2
*	step03.15614.15614.2	3.0735	0.4035	2010.341	2010.188	1	735.4	50.0%	1	K.LSVACFYGGTPYGGQFER.M	2
*	step03.14262.14262.2	2.8796	0.3856	1128.737	1128.3438	1	463.2	85.0%	1	R.IGVPSATEIIK.A	2
*	step06.17892.17892.2	2.3464	0.1852	1525.817	1525.7736	1	361.3	65.4%	1	R.LLDSVPPTAISHFK.Q	2
*	step05.19544.19544.2	6.1124	0.631	2108.922	2109.3293	1	1951.2	69.0%	2	K.GAVEALAAALAHISGATSVDQR.S	2
*	step02.15911.15911.2	3.8318	0.4644	1993.861	1994.2251	1	718.3	64.7%	1	K.LGVCFDVPTASVTEIQEK.W	2

Similarities: gi|13129006|ref|NP_07(1:9)

gi|190610012|ref|NP_0

18.8%

368

42155

6.2

zinc finger protein 24 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17806.17806.3	5.7195	0.5035	3189.484	3188.4639	1	1709.8	36.6%	2	R.EVLVEDMVSQEEAQGLPSSELDAVENQLK.W	3
*	step05.15969.15970.2	3.836	0.4924	1285.84	1285.4353	1	894.8	88.9%	2	K.WASWELHSLR.H	2
*	step06.16483.16483.2	3.5178	0.3825	1472.602	1472.5908	1	959.7	79.2%	1	K.AFSQNSGLINHQR.I	2
*	step03.12841.12841.2	3.1037	0.2751	1190.194	1189.2595	2	389.2	66.7%	2	K.SYSQSSNLFR.H	2
*	step04.15066.15066.1	1.8612	0.1845	784.733	785.0098	101	327.7	66.7%	1	K.LLNVVKV.-	1
*	step04.15068.15068.2	2.4933	0.3282	785.475	785.0098	1	869.0	91.7%	2	K.LLNVVKV.-	2

U	gi\|16306492\|ref\|NP_20	3	5	18.8%	240	27503	7.1	cell division protein kinase 1 isoform 2 [Homo sapiens]
U	gi\|4502709\|ref\|NP_001	3	5	15.2%	297	34095	8.4	cell division protein kinase 1 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.12663.12663.2	3.3294	0.426	1029.365	1029.1724	1	1223.1	83.3%	2	R.SPEVLLGSAR.Y	2
step04.894.894.2	3.9321	0.5462	2213.898	2213.5142	1	703.8	44.7%	2	R.YSTPVDIWSIGTIFAELATK.K	2
step06.19925.19925.2	3.2235	0.3002	1803.247	1803.0109	3	255.2	46.4%	1	K.KPLFHGDSEIDQLFR.I	2

gi|23308579|ref|NP_00

18.8%

160

18697

4.5

prostaglandin E synthase 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14453.14453.2	2.7158	0.4208	1447.737	1446.5803	1	584.8	62.5%	1	K.LTFSCLGGSDNFK.H	2
*	step03.16191.16192.2	4.1523	0.4924	2068.57	2068.2258	1	830.8	68.8%	2	K.HLNEIDLFHCIDPNDSK.H	2

gi|21281671|ref|NP_64

18.8%

9777

6.9

anaphase-promoting complex subunit CDC26 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16477.16477.2	5.0732	0.4545	2005.676	2005.2577	1	2064.0	73.3%	3	R.LELKLDDIEEFENIRK.D	2
*	step02.14421.14421.2	3.2714	0.3701	1521.111	1521.6538	1	1329.9	86.4%	2	K.LDDIEEFENIRK.D	2

gi|310118949|ref|XP_0

18.7%

1944

216264

6.3

PREDICTED: anaphase-promoting complex subunit 1-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.18876.18876.3	4.7698	0.4618	2569.324	2569.8435	1	2111.5	45.2%	2	K.AFTVDSPVQQALWCDFIISQDK.S	3 3
step02.18880.18880.2	6.0774	0.5503	2571.139	2569.8435	1	1649.4	57.1%	3	K.AFTVDSPVQQALWCDFIISQDK.S	2 2
step02.18420.18420.2	2.4763	0.3215	1948.932	1950.2255	1	773.0	59.4%	1	K.DYIASLPFQVANVWPTK.Y	2 2
step06.20094.20094.3	3.9419	0.4067	3135.517	3136.5698	31	545.6	26.9%	2	K.IVFLNTDPSIVM*TYDAVQNVHSVWTLR.R	3 3 3
step04.13710.13710.1	2.2597	0.1677	1233.63	1234.4083	2	135.0	50.0%	2	R.SPSISNMAALSR.A	1 1 1
step04.13812.13812.2	3.853	0.4219	1234.387	1234.4083	1	1628.7	86.4%	2	R.SPSISNMAALSR.A	2 2 2
step04.10680.10680.2	3.4193	0.3339	1250.385	1250.4077	1	1390.4	81.8%	4	R.SPSISNM*AALSR.A	2 2 2
step03.14919.14919.2	3.1504	0.3418	1852.516	1853.0818	1	709.1	56.7%	1	K.GEGM*PPYPYLPGICER.S	2 2
step02.19150.19150.2	3.919	0.4504	1555.867	1555.8428	1	1301.1	84.6%	2	R.DLETLPFGIALPIR.D	2 2 2
step02.18833.18833.3	3.6886	0.3777	1942.86	1942.1552	3	662.6	37.5%	2	R.EQPASDWPEAVCLLIGR.Q	3 3
step02.15371.15371.2	4.4606	0.5313	2175.658	2176.3677	1	1135.3	70.6%	2	R.VNVVQYPELSDHEFIEEK.E	2 2 2 2
step04.16596.16596.3	4.5201	0.3599	3329.045	3329.6455	1	498.7	27.4%	2	R.NTTVDLNSGNIDVPPNMTSWASFHNGVAAGLK.I	3 3 3
step06.19237.19237.2	3.0788	0.3103	1701.815	1700.9817	1	477.9	53.1%	3	K.GHEM*TSIGLLLGVSAAK.L	2 2 2
step05.20846.20846.2	5.6812	0.463	2282.129	2282.7295	1	2101.2	69.4%	2	R.APDTMYLLDFVKPEFLLLR.T	2 2
step05.20859.20859.3	4.8266	0.573	2283.454	2282.7295	1	2833.2	52.8%	3	R.APDTMYLLDFVKPEFLLLR.T	3 3
step05.20158.20158.3	5.0147	0.4374	2298.188	2298.7288	1	1183.8	44.4%	4	R.APDTM*YLLDFVKPEFLLLR.T	3 3
step06.21004.21004.2	4.5396	0.5447	2298.942	2298.7288	1	503.7	55.6%	4	R.APDTM*YLLDFVKPEFLLLR.T	2 2
step02.18717.18717.2	3.5067	0.2752	1588.508	1587.8351	1	1126.3	79.2%	1	R.CLILWDDILPNSK.W	2 2
step03.14652.14652.2	2.4606	0.353	1327.96	1327.5135	1	978.7	80.0%	1	K.WVDSNVPQIIR.E	2 2
step05.15017.15017.2	3.4925	0.5121	1169.384	1169.3577	1	933.4	83.3%	3	R.HLYVLAAEPR.L	2 2
step02.18404.18404.2	5.6087	0.4581	2525.017	2524.8843	1	885.9	54.8%	2	R.LLVPVDVDTNTPCYALLEVTYK.G	2 2
step05.19012.19012.3	4.0369	0.3213	2969.126	2970.4316	1	904.5	31.2%	1	K.GTQWYEQTKEELMAPTLLPELHLLK.Q	3 3
step06.20195.20195.3	5.773	0.4669	2985.874	2986.4312	1	1041.9	32.3%	4	K.GTQWYEQTKEELM*APTLLPELHLLK.Q	3 3
step04.17430.17430.2	5.2183	0.5628	2664.175	2664.9783	1	872.9	56.5%	2	R.AGQLSYKEDPMGWQSLLAQTVANR.N	2 2
step04.17418.17418.3	4.4694	0.4307	2664.795	2664.9783	1	1265.9	33.7%	2	R.AGQLSYKEDPMGWQSLLAQTVANR.N	3 3
step04.16879.16879.2	3.8647	0.5262	2681.033	2680.9775	1	686.7	52.2%	2	R.AGQLSYKEDPM*GWQSLLAQTVANR.N	2 2
step04.16872.16872.3	5.6412	0.4742	2681.586	2680.9775	1	2075.4	40.2%	2	R.AGQLSYKEDPM*GWQSLLAQTVANR.N	3 3
step02.15308.15308.2	3.242	0.3061	1481.603	1481.6531	1	1052.4	63.6%	2	R.EMSETSELWQIK.L	2 2 2
step04.17280.17280.2	3.171	0.274	1097.787	1098.2762	1	1162.8	93.8%	4	K.LVLEFFSSR.S	2 2 2
step04.17683.17684.2	4.0639	0.4682	1481.744	1481.7842	1	1314.1	83.3%	2	R.GLFMNSEFLPVVK.C	2 2 2
step04.16990.16990.2	3.2958	0.3873	1497.442	1497.7836	1	1382.7	83.3%	2	R.GLFM*NSEFLPVVK.C	2 2 2
step02.746.746.2	3.3721	0.4075	1528.036	1526.8898	1	1018.6	69.2%	2	R.LAPLLLGNPQPMVM.-	2 2

Similarities: gi|12056971|ref|NP_07(32:0)
gi|310118953|ref|XP_0(3:29)
gi|169217473|ref|XP_0(4:28)
gi|310114173|ref|XP_0(4:28)
gi|169164061|ref|XP_0(2:30)

U	gi\|58761484\|ref\|NP_00	7	12	18.7%	507	56431	6.5	T-complex protein 1 subunit gamma isoform c [Homo sapiens]
U	gi\|63162572\|ref\|NP_00	7	12	17.4%	545	60534	6.5	T-complex protein 1 subunit gamma isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15779.15779.2	2.8326	0.3027	1280.619	1280.492	1	1003.1	80.0%	2	R.IVLLDSSLEYK.K	2
step04.19299.19299.3	3.5345	0.3436	3435.108	3435.921	1	942.5	29.6%	1	R.ILQM*EEEYIQQLCEDIIQLKPDVVITEK.G	3
step05.16299.16299.2	3.5416	0.4801	1404.617	1404.6199	1	1422.8	77.3%	2	K.GISDLAQHYLMR.A	2
step02.9266.9266.2	2.4314	0.1285	1235.456	1235.3898	5	1017.8	83.3%	1	R.NLQDAMQVCR.N	2
step03.14390.14390.2	3.265	0.2727	1167.22	1167.3833	2	1177.5	80.0%	2	R.AVAQALEVIPR.T	2
step04.11934.11934.2	3.4745	0.475	1334.441	1334.4979	1	1265.4	81.8%	2	R.TLIQNCGASTIR.L	2
step03.16635.16635.2	3.9086	0.2841	1186.837	1186.4265	1	2595.3	90.0%	2	K.TAVETAVLLLR.I	2

U	gi\|301171467\|ref\|NP_0	10	20	18.6%	661	73156	7.2	ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens]
U	gi\|87196351\|ref\|NP_00	10	20	18.6%	662	73244	7.2	ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens]
U	gi\|301171475\|ref\|NP_0	10	20	19.0%	646	71355	6.6	ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15052.15052.2	4.2859	0.434	1883.786	1884.0359	1	2442.0	81.2%	1	R.LEQELFSGGNTGINFEK.Y	2 2
step03.20142.20142.2	4.574	0.5663	2334.204	2333.6682	1	958.4	50.0%	5	K.TAAFLLPILSQIYSDGPGEALR.A	2
step03.20160.20160.3	5.9754	0.4953	2334.903	2333.6682	1	2829.6	45.2%	2	K.TAAFLLPILSQIYSDGPGEALR.A	3
step06.16807.16807.2	4.0156	0.4506	1890.073	1889.1418	1	653.5	62.5%	2	R.VRPCVVYGGADIGQQIR.D	2 2
step06.17203.17203.2	2.4978	0.5184	1181.051	1181.3635	1	985.4	70.0%	1	R.GCHLLVATPGR.L	2 2
step02.9101.9101.2	2.4488	0.2292	1094.53	1094.1996	1	1012.5	93.8%	1	K.YLVLDEADR.M	2 2
step02.16050.16050.2	3.4512	0.5056	1337.591	1337.5938	1	1911.2	90.0%	2	R.MLDMGFEPQIR.R	2 2 2 2
step03.18608.18608.2	4.0157	0.4599	1292.192	1292.5059	1	2224.7	86.4%	2	R.SFLLDLLNATGK.D	2
step03.16531.16531.2	3.8352	0.3625	1525.768	1525.6904	1	1665.2	80.8%	2	R.VGNLGLATSFFNER.N	2
step02.19040.19040.2	3.5201	0.4291	1129.471	1129.3286	1	1511.4	83.3%	2	K.DLLDLLVEAK.Q	2 2

Similarities: gi|13514809|ref|NP_00(6:4)
gi|4758138|ref|NP_004(1:9)
gi|148613856|ref|NP_0(1:9)

U	gi\|4506649\|ref\|NP_000	6	13	18.6%	403	46109	10.2	60S ribosomal protein L3 isoform a [Homo sapiens]
U	gi\|76496472\|ref\|NP_00	6	13	21.2%	354	40152	10.2	60S ribosomal protein L3 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.10929.10929.2	4.2455	0.3145	1715.044	1713.9374	1	1149.8	70.0%	4	K.AHLM*EIQVNGGTVAEK.L	2
step02.16518.16518.3	4.7958	0.4659	2988.61	2989.3503	1	1531.2	42.0%	1	R.ERLEQQVPVNQVFGQDEM*IDVIGVTK.G	3
step02.17594.17594.2	5.2601	0.5585	2688.359	2688.05	1	1467.9	52.2%	1	R.LEQQVPVNQVFGQDEMIDVIGVTK.G	2
step06.17465.17465.2	3.243	0.3476	1238.314	1238.4167	2	942.7	70.0%	2	K.VACIGAWHPAR.V	2
step05.18381.18381.2	5.2007	0.6594	2439.087	2438.7864	1	1548.3	54.8%	4	K.SINPLGGFVHYGEVTNDFVMLK.G	2 2
step05.17673.17673.3	4.5277	0.5062	2455.175	2454.786	1	1554.3	46.4%	1	K.SINPLGGFVHYGEVTNDFVM*LK.G	3 3

Similarities: gi|310133085|ref|XP_0(2:4)

gi|4506607|ref|NP_000

18.6%

188

21634

11.7

60S ribosomal protein L18 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13138.13138.2	3.1514	0.3943	1251.436	1251.414	1	596.6	80.0%	2	R.TNSTFNQVVLK.R	2
*	step02.17109.17109.2	3.6177	0.4519	1461.73	1461.6846	1	1457.9	91.7%	2	K.ILTFDQLALDSPK.G	2
*	step04.13182.13182.2	3.5138	0.452	1117.383	1117.2745	1	1279.2	90.0%	2	K.GCGTVLLSGPR.K	2

gi|72534660|ref|NP_00

18.5%

238

27367

11.8

serine/arginine-rich splicing factor 7 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11523.11523.2	3.4519	0.4508	1136.228	1136.2828	1	1099.6	86.4%	2	K.VYVGNLGTGAGK.G	2
	step03.16411.16411.2	3.4461	0.4321	1622.669	1622.7615	1	921.1	69.2%	3	R.NPPGFAFVEFEDPR.D	2 2
*	step03.16441.16441.2	2.8054	0.3418	2378.777	2379.5261	7	203.8	37.5%	2	R.NPPGFAFVEFEDPRDAEDAVR.G	2
*	step05.13972.13972.2	2.9725	0.2099	1245.927	1245.4775	1	961.3	75.0%	1	R.VRVELSTGMPR.R	2

Similarities: gi|4506901|ref|NP_003(1:3)

gi|148747209|ref|NP_0

18.5%

178

21188

9.9

nucleolar protein 16 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16114.16114.2	3.5635	0.3261	2045.633	2045.3218	1	430.6	55.9%	2	R.KPYVLNDLEAEASLPEKK.G	2
*	step02.19132.19132.2	4.1114	0.5722	1887.717	1888.0679	1	1001.9	78.6%	2	R.FYPAEWQDFLDSLQK.R	2

U	gi\|294489216\|ref\|NP_0	9	18	18.4%	632	70225	5.4	highly divergent homeobox isoform 2 [Homo sapiens]
U	gi\|42476009\|ref\|NP_65	9	18	16.8%	690	77206	5.9	highly divergent homeobox isoform 1 [Homo sapiens]
U	gi\|294489218\|ref\|NP_0	9	18	16.8%	690	77206	5.9	highly divergent homeobox isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12738.12738.2	2.7559	0.3488	1304.24	1304.5254	1	339.4	75.0%	2	R.NMPNSQMVNIR.D	2
step05.14057.14057.2	6.1763	0.6154	1982.867	1982.1646	1	1798.6	76.5%	2	R.TSLHTASSTMYSNTNPLR.S	2
step06.17161.17161.2	3.7379	0.4549	1591.779	1592.697	1	1782.5	84.6%	2	R.SNFSPHFASSNQLR.L	2
step05.16275.16275.2	5.0157	0.542	2752.941	2751.9858	1	582.0	47.8%	3	R.LSQNQNNYQISGNLTVPWITGCSR.K	2
step02.13928.13928.2	4.6276	0.4689	1646.42	1646.7998	1	2186.4	88.5%	2	K.YWDNGMTSLGSVCR.E	2
step02.15606.15606.2	2.8888	0.3381	2088.565	2089.3264	1	707.1	58.8%	1	R.EKIEAVATELNVDCEIVR.T	2
step04.15176.15176.2	2.2717	0.1677	1108.721	1109.3672	1	709.0	83.3%	1	R.LMGIEVPPPR.G	2
step04.12716.12716.2	2.7239	0.467	1124.559	1125.3666	1	687.6	77.8%	4	R.LM*GIEVPPPR.G	2
step04.15372.15372.1	1.858	0.1856	775.565	776.0232	1	528.6	75.0%	1	R.SLILAMK.A	1

U	gi\|16332358\|ref\|NP_27	14	23	18.3%	782	91332	5.5	cell division protein kinase 11B isoform 2 [Homo sapiens]
U	gi\|16332372\|ref\|NP_27	14	23	18.5%	771	90047	5.4	cell division protein kinase 11B isoform 9 [Homo sapiens]
U	gi\|16332370\|ref\|NP_27	14	23	18.3%	780	91009	5.4	cell division protein kinase 11B isoform 8 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.12994.12994.2	3.1852	0.1717	1089.276	1089.2213	1	940.1	87.5%	2	K.TLDEILQEK.K	2 2
step02.8331.8332.2	3.2639	0.4955	1286.523	1286.415	1	1377.3	90.0%	2	R.IEEGTYGVVYR.A	2 2 2
step05.16282.16282.2	2.7428	0.2019	1835.688	1836.2091	1	476.2	50.0%	1	K.SLMETMKQPFLPGEVK.T	2 2 2
step05.14194.14194.2	2.3377	0.1783	1867.47	1868.2079	1	404.8	63.3%	1	K.SLMETMKQPFLPGEVK.T	2 2 2
step05.17133.17133.2	2.9449	0.1797	988.408	988.27313	1	727.6	92.9%	2	K.TLMIQLLR.G	2 2 2
step06.18926.18926.2	2.8939	0.4598	1367.833	1367.6191	1	1518.9	79.2%	1	K.TSNLLLSHAGILK.V	2 2 2
step05.17817.17817.2	2.4821	0.4483	1468.469	1468.7236	1	565.7	68.2%	2	K.AYTPVVVTLWYR.A	2 2
step03.14376.14376.2	2.561	0.2966	912.299	912.10846	1	760.0	93.8%	1	R.APELLLGAK.E	2 2 2
step04.14611.14611.2	3.7025	0.4399	1509.851	1509.6714	1	872.0	81.8%	2	K.MTFSEHPYNNLR.K	2 2 2
step02.17565.17565.2	4.0879	0.4534	1656.699	1656.8843	1	1587.5	78.6%	2	R.FGALLSDQGFDLMNK.F	2 2 2
step02.16244.16244.2	4.7851	0.492	1672.051	1672.8837	1	1378.1	75.0%	2	R.FGALLSDQGFDLM*NK.F	2 2 2
step05.15551.15551.1	1.8266	0.2139	1000.493	1001.1623	5	297.5	71.4%	1	K.FLTYFPGR.R	1 1 1
step03.14259.14259.2	3.1129	0.3346	1565.466	1565.7114	1	1028.7	75.0%	2	R.ISAEDGLKHEYFR.E	2 2 2
step02.17013.17013.2	3.369	0.502	1944.7	1944.2394	1	583.8	56.2%	2	R.ETPLPIDPSM*FPTWPAK.S	2 2 2

Similarities: gi|16332360|ref|NP_27(13:1)
gi|148763345|ref|NP_2(13:1)

gi|228008396|ref|NP_0

18.3%

464

52046

9.2

heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.9738.9738.2	3.0474	0.455	1312.582	1312.411	1	443.3	63.6%	1	R.TGYTLDVTTGQR.K	2 2 2 2
step02.19059.19059.2	3.8072	0.304	1595.366	1594.7863	1	1189.0	87.5%	2	R.DLFEDELVPLFEK.A	2 2
step03.11905.11905.2	2.7069	0.2688	1293.52	1293.5392	1	1196.0	80.0%	2	R.LMMDPLTGLNR.G	2 2
step05.14286.14286.2	2.5222	0.2908	861.272	861.0632	5	642.9	92.9%	2	R.LFVGSIPK.S	2 2 2 2
step02.15828.15828.2	3.7899	0.4058	1943.937	1944.1312	1	1303.4	62.5%	2	K.VTEGLTDVILYHQPDDK.K	2 2
step03.15634.15634.2	2.8718	0.2873	1446.057	1445.5509	1	910.0	75.0%	1	R.GFCFLEYEDHK.T	2 2 2 2
step02.17044.17044.2	3.8831	0.4738	1474.642	1474.6385	1	1292.4	83.3%	2	R.NLANTVTEEILEK.A	2 2

Similarities: gi|228008291|ref|NP_0(7:0)
gi|156151392|ref|NP_0(3:4)
gi|156151394|ref|NP_0(3:4)

gi|55749924|ref|NP_00

18.2%

559

63748

7.4

DEP domain-containing protein 5 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16814.16814.2	5.4693	0.4772	2465.134	2464.7986	1	1274.4	59.5%	4	K.LGDIVEIAHPNDEYSPLLLQVK.S	2 2
step05.18254.18254.2	5.1002	0.5426	2565.492	2565.8613	1	1852.1	61.9%	4	K.SLKEDLQKETISVDQTVTQVFR.L	2 2
step05.18270.18270.3	6.6559	0.5098	2566.221	2565.8613	1	2958.8	46.4%	4	K.SLKEDLQKETISVDQTVTQVFR.L	3 3
step02.15963.15963.2	2.7629	0.3255	1623.774	1623.7892	1	1298.2	65.4%	2	K.ETISVDQTVTQVFR.L	2 2
step02.18830.18830.2	3.8487	0.4994	1393.692	1393.607	1	2009.4	86.4%	2	K.DVTLDLVELTFK.D	2 2
step04.18162.18162.2	6.2113	0.6071	2125.023	2126.395	1	1581.7	61.8%	8	K.DVTLDLVELTFKDQYIGR.G	2 2
step03.15577.15577.2	2.9315	0.2935	2009.607	2008.285	1	482.3	44.4%	1	R.TGQM*SVVITPGVGVFEVDR.L	2 2
step02.16959.16959.2	3.0675	0.4867	2443.942	2444.595	1	590.5	52.5%	1	K.ESENALPIQVDYDAYDAQVFR.L	2 2

Similarities: gi|209862859|ref|NP_0(8:0)

gi|113430845|ref|XP_0

120

18.1%

4096

465469

7.2

PREDICTED: DNA-dependent protein kinase catalytic subunit-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.19008.19008.2	4.9894	0.563	2621.1	2620.9768	1	1061.2	47.9%	2	R.GLGQECVLSSSPAVLALQTSLVFSR.D	2 2 2
step04.17581.17581.2	2.3443	0.1261	1285.819	1284.6067	1	504.0	75.0%	1	K.CKIPALDLLIK.L	2 2 2
step03.20211.20211.2	4.6191	0.5528	2859.357	2859.2495	1	715.9	45.8%	3	K.VYELLGLLGEVHPSEMINNAENLFR.A	2 2 2
step03.20233.20234.3	6.6657	0.5783	2859.518	2859.2495	1	1952.3	44.8%	5	K.VYELLGLLGEVHPSEMINNAENLFR.A	3 3 3
step03.18820.18820.2	3.1997	0.3509	2874.505	2875.2488	1	272.6	35.4%	1	K.VYELLGLLGEVHPSEM*INNAENLFR.A	2 2 2
step05.14724.14724.2	2.4297	0.1602	971.375	971.2125	1	1004.1	75.0%	2	K.LPVLAGCLK.G	2 2 2
step04.16987.16987.2	4.0427	0.3775	1241.4	1240.4244	1	1080.8	80.0%	2	K.GLSSLLCNFTK.S	2 2 2
step04.12260.12260.2	2.3448	0.3369	934.246	934.0742	1	760.2	100.0%	1	R.YAVPSAGLR.L	2 2 2
step03.17482.17484.2	3.8052	0.4213	1150.535	1150.3495	1	1739.1	85.0%	1	K.AALSALESFLK.Q	2 2 2
step04.15607.15607.1	1.9776	0.2194	832.841	833.053	11	692.3	71.4%	1	K.VFLALAAK.G	1 1 1
step05.14940.14940.2	3.7221	0.4287	1444.056	1444.7255	1	1635.0	73.1%	1	R.VVQMLGSLGGQINK.N	2 2 2
step06.21038.21038.2	2.9556	0.4714	1706.118	1705.1	1	710.8	76.9%	2	R.EMKPVIFLDVFLPR.V	2 2 2
step06.20617.20617.2	2.8549	0.4561	1721.727	1721.0994	1	234.2	65.4%	1	R.EM*KPVIFLDVFLPR.V	2 2 2
step03.11295.11295.2	4.4342	0.3898	2100.412	2100.3613	1	791.6	66.7%	2	K.ATQMPEGGQGAPPMYQLYK.R	2 2 2
step06.19043.19043.2	3.7954	0.5807	1374.401	1374.6118	1	1820.2	81.8%	1	R.LYSLALHPNAFK.R	2 2 2
step04.18181.18181.2	3.1208	0.3418	1617.605	1617.9043	1	279.6	71.4%	3	R.GFPPSASLCLLDLVK.W	2 2 2
step03.20013.20013.2	5.5097	0.5391	2076.695	2077.4321	1	1472.1	63.9%	3	K.AVAFFLESIAMHDIIAAEK.C	2 2 2
step03.18910.18910.2	5.0052	0.4919	2093.366	2093.4316	1	702.5	58.3%	2	K.AVAFFLESIAM*HDIIAAEK.C	2 2 2
step02.16952.16952.2	4.7376	0.4861	1984.933	1985.2467	1	1644.4	75.0%	2	R.IM*EFTTTLLNTSPEGWK.L	2 2 2
step03.12794.12794.2	2.2789	0.1114	996.463	997.1303	16	510.6	71.4%	1	K.DILETHLR.E	2 2 2
step02.19038.19038.2	2.5197	0.3624	1990.448	1991.2528	1	537.6	47.1%	1	K.NLDLAVLELMQSSVDNTK.M	2 2 2
step02.16908.16908.2	3.0203	0.4523	2006.678	2007.2522	1	555.6	58.8%	2	K.NLDLAVLELM*QSSVDNTK.M	2 2 2
step06.18589.18589.2	2.5317	0.2225	1211.499	1211.4377	2	500.0	66.7%	2	K.LATTILQHWK.K	2 2 2
step05.15814.15814.2	2.2427	0.2531	946.556	946.233	1	1550.7	100.0%	1	K.M*AVLALLAK.I	2 2 2
step06.19374.19374.2	3.4961	0.4303	1785.554	1785.1035	1	543.3	64.3%	3	R.VLEQLIVAHFPM*QSR.E	2 2 2
step04.1583.1583.3	3.5305	0.1447	2711.262	2710.197	1	832.5	30.7%	1	K.FLDALELSQSPMLLELMTEVLCR.E	3 3 3
step04.19648.19648.2	4.8972	0.4071	1446.541	1445.7283	1	1724.9	81.8%	5	K.NLLIFENLIDLK.R	2 2 2
step02.16317.16317.2	3.4148	0.3696	1609.45	1609.8276	1	1201.6	79.2%	2	R.YNFPVEVEVPMER.K	2 2 2
step04.16244.16244.2	3.8347	0.3725	1680.785	1679.9408	1	853.4	61.5%	4	K.LVINTEEVFRPYAK.H	2 2 2
step05.15960.15960.2	2.8415	0.2768	895.833	895.14453	2	420.1	91.7%	1	R.LLNFLM*K.H	2 2 2
step02.9600.9600.2	2.3598	0.2891	1024.011	1024.146	3	617.8	71.4%	1	K.DCLSIPYR.L	2 2 2
step03.17736.17736.2	5.0202	0.5571	1646.704	1646.9008	1	1840.9	80.8%	2	R.KNILEESLCELVAK.Q	2 2 2
step04.17268.17268.2	4.5635	0.431	2085.751	2086.3274	1	992.9	64.7%	3	R.ELLNPVVEFVSHPSTTCR.E	2 2 2
step03.18871.18871.2	4.8902	0.458	2119.975	2120.4783	1	2284.8	69.4%	2	K.DVLIQGLIDENPGLQLIIR.N	2 2 2
step02.19544.19544.3	6.2852	0.4481	2121.609	2120.4783	1	3046.6	50.0%	2	K.DVLIQGLIDENPGLQLIIR.N	3 3 3
step05.15935.15935.2	3.2696	0.4148	1219.591	1219.455	1	941.5	80.0%	1	R.LLALNSLYSPK.I	2 2 2
step03.10838.10838.2	4.3403	0.5817	1918.683	1919.002	1	732.8	62.5%	2	R.ATQQQHDFTLTQTADGR.S	2 2 2
step03.17157.17157.3	5.874	0.5042	3236.426	3236.447	1	1420.8	36.2%	1	R.SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK.R	3 3 3
step03.13794.13794.2	3.3767	0.3093	1136.451	1136.2828	1	1381.6	83.3%	2	R.HGDLPDIQIK.H	2 2 2
step05.19323.19323.2	3.3079	0.4172	1340.291	1340.5922	1	605.1	81.8%	2	K.QLFSSLFSGILK.E	2 2 2
step02.15105.15105.2	3.3127	0.1726	957.187	957.14923	1	657.7	92.9%	2	R.LLEEALLR.L	2 2 2
step02.18764.18764.2	5.7581	0.4636	1905.819	1905.1813	1	3000.2	78.1%	2	K.LLLQGEADQSLLTFIDK.A	2 2 2
step06.21887.21887.2	4.6996	0.472	2181.867	2182.5017	1	2210.3	66.7%	3	K.LQSVQALTEIQEFISFISK.Q	2 2 2
step04.13881.13881.2	2.5616	0.3538	1018.479	1018.15125	1	625.1	92.9%	2	R.LLNTWTNR.Y	2 2 2
step02.19373.19373.2	4.2842	0.3806	1734.364	1734.9785	1	1398.8	84.6%	2	K.MDPMNIWDDIITNR.C	2 2 2
step02.17627.17627.2	2.8695	0.1845	1768.041	1766.9774	1	806.2	65.4%	1	K.MDPMNIWDDIITNR.C	2 2 2
step03.662.662.2	2.209	0.1172	3056.348	3055.902	1	543.6	22.5%	1	K.IEEKLT#PLPEDNS#MNVDQDGDPS#DR.M	2 2 2
step02.5682.5682.2	3.5913	0.4906	2332.408	2332.4016	1	451.0	45.0%	2	K.LTPLPEDNSM*NVDQDGDPSDR.M	2 2 2
step02.15363.15363.2	4.677	0.4078	1807.38	1806.9733	1	2577.9	78.6%	1	R.MEVQEQEEDISSLIR.S	2 2 2
step01.9988.9988.1	2.2353	0.1301	1161.56	1160.3308	18	370.2	58.3%	4	K.MKMIDS#ARK.Q	1 1 1
step04.13040.13040.2	2.7664	0.289	920.294	920.0907	1	587.8	92.9%	2	K.VIAGLYQR.A	2 2 2
step06.2117.2117.3	5.1783	0.5193	3004.42	3004.383	1	1380.2	31.7%	2	K.SKLDQGGVIQDFINALDQLSNPELLFK.D	3 3 3
step04.2548.2548.2	5.2018	0.5312	2789.033	2789.1326	1	1401.4	47.9%	4	K.LDQGGVIQDFINALDQLSNPELLFK.D	2 2 2
step03.2489.2489.3	5.5261	0.5041	2789.584	2789.1326	1	1647.4	40.6%	2	K.LDQGGVIQDFINALDQLSNPELLFK.D	3 3 3
step04.13126.13126.1	1.8016	0.1411	840.481	840.9888	1	455.3	75.0%	1	K.FIQTFGK.E	1 1 1
step02.18998.18998.2	4.8524	0.5181	1638.8	1637.9225	1	2664.4	84.6%	1	K.LSDFNDITNMLLLK.M	2 2 2
step02.17644.17644.2	4.499	0.4418	1654.171	1653.9219	1	1878.4	84.6%	2	K.LSDFNDITNM*LLLK.M	2 2 2
step02.8067.8067.2	2.7817	0.1997	1391.449	1391.4681	1	569.9	72.7%	1	R.NELEIPGQYDGR.G	2 2 2
step03.14443.14443.2	2.2409	0.1852	1508.346	1508.6932	1	783.5	63.6%	1	R.APPCEYKDWLTK.M	2 2 2
step04.14854.14854.2	2.5301	0.1162	1344.34	1344.5847	2	364.8	70.0%	1	K.HDVGAYM*LMYK.G	2 2 2
step03.16047.16047.2	2.427	0.4105	1322.69	1323.5436	1	1070.5	86.4%	1	R.MSTSPEAFLALR.S	2 2 2
step02.17742.17742.2	3.7285	0.4179	1637.714	1637.8793	1	1198.0	82.1%	2	R.SDPGLLTNTMDVFVK.E	2 2 2
step03.15902.15902.2	4.4967	0.5086	2122.875	2122.4014	1	1841.6	65.8%	3	K.LAGANPAVITCDELLLGHEK.A	2 2 2

Similarities: gi|13654237|ref|NP_00(63:0)
gi|126032350|ref|NP_0(63:0)

U	gi\|14141161\|ref\|NP_00	10	15	18.1%	806	88980	5.8	heterogeneous nuclear ribonucleoprotein U isoform b [Homo sapiens]
U	gi\|74136883\|ref\|NP_11	10	15	17.7%	825	90585	6.0	heterogeneous nuclear ribonucleoprotein U isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.13186.13186.3	5.7049	0.4614	3129.033	3128.292	1	1130.8	33.9%	2	R.LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR.S	3
step06.18820.18820.2	2.483	0.2494	1715.793	1715.9315	1	413.6	47.1%	1	K.SSGPTSLFAVTVAPPGAR.Q	2
step04.14134.14134.2	3.564	0.4591	1737.24	1738.0573	1	663.0	70.0%	2	K.KDCEVVMMIGLPGAGK.T	2
step06.18181.18181.2	4.1469	0.4793	2189.073	2188.45	1	432.7	44.7%	1	K.HAAENPGKYNILGTNTIMDK.M	2
step02.14724.14724.2	2.3114	0.1859	1383.478	1383.5957	1	1402.7	81.8%	1	K.YNILGTNTIMDK.M	2
step04.13164.13164.2	2.3206	0.2648	858.254	858.0209	1	438.3	91.7%	1	K.LNTLLQR.A	2
step03.12970.12970.1	2.3074	0.2471	819.547	819.9711	5	401.5	83.3%	2	K.FIEIAAR.K	1
step02.13400.13400.2	4.5288	0.4236	1648.672	1648.802	1	3036.9	85.7%	2	R.NFILDQTNVSAAAQR.R	2
step05.16448.16448.2	3.2376	0.489	1130.227	1130.3385	1	1237.9	93.8%	2	K.MCLFAGFQR.K	2
step02.19518.19518.2	3.7387	0.5105	2604.331	2603.8552	1	696.3	40.5%	1	K.GNFTLPEVAECFDEITYVELQK.E	2

U	gi\|16117794\|ref\|NP_05	2	6	18.1%	105	12254	11.6	60S ribosomal protein L36 [Homo sapiens]
U	gi\|16117796\|ref\|NP_37	2	6	18.1%	105	12254	11.6	60S ribosomal protein L36 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.11354.11354.2	2.4732	0.1578	1009.323	1009.20447	1	551.0	75.0%	2	R.YPM*AVGLNK.G	2
	step02.8808.8808.2	2.7219	0.4275	1229.077	1228.3291	1	726.4	83.3%	4	R.EVCGFAPYER.R	2

gi|13994259|ref|NP_11

17.9%

430

48006

9.9

28S ribosomal protein S5, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20950.20950.2	4.0901	0.5077	1635.639	1635.9962	1	764.5	76.9%	2	R.YGFLWPGLNVPLMK.N	2
*	step06.20471.20471.2	3.3113	0.4736	1652.642	1651.9956	1	600.1	69.2%	2	R.YGFLWPGLNVPLM*K.N	2
*	step03.15729.15729.2	3.3431	0.4322	1646.698	1646.7845	1	1072.5	83.3%	2	R.YEDHTIFHDISLR.F	2
*	step05.18783.18783.2	5.0611	0.5578	1724.827	1724.0186	1	1473.6	70.0%	2	K.VSGSINMLSLTQGLFR.G	2
*	step05.16636.16636.2	3.6172	0.4236	1739.609	1740.018	1	1850.7	73.3%	2	K.VSGSINM*LSLTQGLFR.G	2
*	step02.13984.13984.2	3.3968	0.4134	1524.609	1524.7374	1	1132.0	76.9%	2	R.EECGPLPIVVASPR.G	2
*	step02.16180.16180.2	2.7325	0.2849	2382.649	2383.5498	1	240.3	42.1%	1	R.KDPEPEDEVPDVKLDWEDVK.T	2

gi|5454088|ref|NP_006

17.9%

251

28788

4.1

acidic leucine-rich nuclear phosphoprotein 32 family member B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17206.17206.2	3.1081	0.3467	1194.042	1194.4258	1	829.2	90.0%	2	R.IFGGLDMLAEK.L	2
*	step02.14985.14985.2	2.9384	0.2494	1210.421	1210.4252	2	652.7	80.0%	1	R.IFGGLDM*LAEK.L	2
*	step06.18592.18592.2	3.0694	0.3607	1422.179	1421.627	1	658.9	75.0%	2	K.LPNLTHLNLSGNK.L	2
	step02.17120.17120.2	5.1935	0.5183	1974.39	1974.1108	1	1930.1	73.3%	2	K.SLDLFNCEVTNLNDYR.E	2 2
*	step03.17581.17581.2	4.2401	0.4324	2565.25	2564.7822	1	648.2	42.5%	2	K.SLDLFNCEVTNLNDYRESVFK.L	2

Similarities: gi|5453880|ref|NP_006(1:4)

gi|12597661|ref|NP_07

17.8%

332

37535

8.4

39S ribosomal protein L44, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17184.17184.2	3.5186	0.3672	1321.518	1320.5161	1	1127.5	85.0%	1	R.LQENFSLDLLK.T	2
*	step03.19178.19178.2	3.3885	0.0848	1984.007	1984.0868	1	604.2	40.0%	1	K.TAFVNSCYIKS#EEAKR.Q	2
*	step03.19669.19669.2	3.6769	0.4531	1469.719	1469.8148	1	1167.5	83.3%	2	K.IINPMGLLVEELK.K	2
*	step02.16044.16044.2	5.5748	0.6116	1955.171	1955.1555	1	2229.4	75.0%	1	K.LIAEGPGETVLVAEEEAAR.V	2

gi|45827798|ref|NP_99

17.8%

286

32595

6.1

serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.19050.19050.2	3.5272	0.4733	2600.571	2599.8333	1	393.8	42.9%	1	R.LFEYGGFPPESNYLFLGDYVDR.G	2 2
step06.19913.19913.2	2.7402	0.2031	1440.798	1440.7135	1	848.0	80.0%	1	K.IKYPENFFLLR.G	2 2 2
step02.18498.18498.2	5.811	0.5545	2115.898	2115.3557	1	1609.9	67.6%	4	K.TFTDCFNCLPIAAIVDEK.I	2 2 2

Similarities: gi|4506005|ref|NP_002(2:1)
gi|4506003|ref|NP_002(3:0)

U	gi\|4885375\|ref\|NP_005	8	16	17.8%	213	21365	10.9	histone H1.2 [Homo sapiens]
U	gi\|4885379\|ref\|NP_005	8	16	17.4%	219	21865	11.0	histone H1.4 [Homo sapiens]
U	gi\|4885377\|ref\|NP_005	8	16	17.2%	221	22350	11.0	histone H1.3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14162.14163.2	2.6365	0.3527	1326.622	1327.5518	2	427.7	58.3%	1	R.KASGPPVSELITK.A	2
step05.14291.14291.3	4.0619	0.2441	1328.277	1327.5518	1	1129.1	56.2%	2	R.KASGPPVSELITK.A	3
step03.13294.13294.2	2.7774	0.377	1198.944	1199.3789	1	567.7	72.7%	2	K.ASGPPVSELITK.A	2
step03.13401.13401.1	2.9155	0.3052	1199.659	1199.3789	1	492.6	59.1%	3	K.ASGPPVSELITK.A	1
step05.13398.13400.2	2.5035	0.1387	974.387	974.1798	1	1230.5	88.9%	1	R.SGVSLAALKK.A	2
step03.10629.10629.2	2.6867	0.2611	1235.92	1236.3992	1	1040.5	77.3%	1	K.KALAAAGYDVEK.N	2 2
step02.7704.7704.2	2.9611	0.555	1107.937	1108.2263	1	1198.1	85.0%	1	K.ALAAAGYDVEK.N	2 2
step03.9610.9610.2	4.003	0.5379	1579.601	1579.6965	1	1451.4	75.0%	5	K.ALAAAGYDVEKNNSR.I	2 2

Similarities: gi|20544168|ref|NP_00(3:5)

gi|131412225|ref|NP_7

17.7%

458

49558

5.0

keratin, type I cytoskeletal 13 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12430.12430.2	6.3794	0.5939	2148.488	2148.2295	1	1948.0	65.9%	2	R.LQSSSASYGGGFGGGSCQLGGGR.G	2 2 2
step03.11203.11203.2	2.2797	0.2704	1144.613	1145.2913	1	478.3	77.8%	1	K.ILTATIENNR.V	2 2 2
step06.1757.1757.2	3.7896	0.3544	2602.007	2602.968	1	2038.6	59.1%	1	R.YALQLQQIQGLISSIEAQLSELR.S	2 2 2
step03.13960.13960.2	3.1251	0.3723	1380.598	1380.5316	1	884.8	80.0%	2	K.TRLEQEIATYR.S	2 2 2 2 2 2
step02.9244.9244.2	2.2743	0.1525	1488.483	1489.5731	1	692.8	51.3%	1	K.M*IGFPSSAGSVS#PR.S	2 2

gi|83700235|ref|NP_00

17.7%

407

46402

5.5

eukaryotic initiation factor 4A-II [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15044.15044.2	5.1102	0.5122	1828.739	1829.0483	1	1396.1	80.0%	2	R.GIYAYGFEKPSAIQQR.A	2 2 2
step02.8652.8652.2	4.4927	0.4794	1396.447	1395.5	1	1079.2	76.9%	1	K.GYDVIAQAQSGTGK.T	2 2
step02.18046.18047.2	5.4929	0.5722	1558.068	1556.7865	1	2794.4	91.7%	2	K.MFVLDEADEMLSR.G	2 2
step02.16707.16707.2	5.1732	0.4345	1573.598	1572.786	1	2482.1	91.7%	3	K.M*FVLDEADEMLSR.G	2 2
step02.13355.13355.2	5.3864	0.4633	1589.494	1588.7854	1	2131.2	91.7%	2	K.MFVLDEADEMLSR.G	2 2
step02.16298.16298.2	3.3948	0.4634	1115.463	1115.3483	1	1216.0	94.4%	2	R.VLITTDLLAR.G	2 2
step02.17249.17249.2	5.8485	0.5132	2146.599	2145.4014	1	1452.8	58.3%	1	R.GIDVQQVSLVINYDLPTNR.E	2 2

Similarities: gi|4503529|ref|NP_001(7:0)
gi|7661920|ref|NP_055(1:6)

gi|15147337|ref|NP_05

17.4%

2799

309352

5.8

E3 ubiquitin-protein ligase UBR5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18770.18770.2	3.8803	0.3599	2051.97	2052.3193	1	577.1	58.8%	2	K.YNLNSHPPLNVLEQATIK.Q	2
	step02.16845.16845.2	4.5569	0.5377	1740.721	1740.8516	1	1868.0	76.7%	2	R.TSDSPWFLSGSETLGR.L	2 2
	step06.21139.21139.3	5.7008	0.5277	3342.38	3341.8435	1	1666.2	33.6%	4	R.GSGLLGSQPQPVIPASVIPEELISQAQVVLQGK.S	3 3
	step02.17187.17187.2	3.8559	0.3536	1656.794	1656.8656	1	1544.9	78.6%	1	R.TNLDVNLAVNNLLSR.D	2 2
	step04.16903.16903.2	2.6668	0.0842	953.848	953.20374	1	705.7	92.9%	2	R.VLLLPLER.D	2 2
*	step05.20391.20391.2	4.5919	0.4378	1872.858	1872.1879	1	1201.5	68.8%	3	K.FICIGALYSELLAVSSK.G	2
	step02.16806.16806.2	3.7806	0.4732	1595.011	1593.7599	1	1336.0	75.0%	2	K.VATWVDETLSSVASK.L	2 2
	step02.16652.16652.2	3.186	0.4369	1188.246	1188.348	1	1149.1	88.9%	2	R.YCIFDLATGK.A	2 2
	step04.19374.19374.2	4.2331	0.4417	2126.326	2127.3445	1	1323.2	57.1%	1	R.LSAVEAIANAISVVSSNGPGNR.A	2 2
	step02.7517.7517.2	3.3883	0.3689	2010.981	2010.0853	1	718.6	50.0%	1	K.TASPEDSDMPDHDLEPPR.F	2 2
	step03.13848.13848.2	3.1183	0.301	948.576	948.1009	1	1366.1	92.9%	2	R.FAQLALER.V	2 2
	step02.13466.13466.2	2.596	0.2987	1087.392	1087.2534	1	715.7	81.2%	2	R.VLQDWNALK.S	2 2
	step05.15521.15521.3	3.8423	0.2608	2296.666	2296.568	1	1896.5	43.4%	1	R.IGHLLPEEQVYLNQQSGTIR.L	3 3
	step04.15303.15303.2	3.2547	0.2914	1406.67	1406.639	1	822.2	75.0%	3	R.LDCFTHCLIVK.C	2 2
	step04.2806.2806.2	3.3622	0.4581	2832.164	2831.2922	1	859.3	39.6%	1	R.VFQALLPYAVEELCNVAESLIVPVR.M	2 2
	step02.15476.15476.2	3.9501	0.4334	2708.386	2707.9316	1	817.5	38.9%	1	R.AASTAPSSTSTPAASSAGLIYIDPSNLR.R	2 2
	step05.14826.14826.2	2.2558	0.2041	1603.765	1603.846	1	297.7	57.7%	1	K.YNHLVYSQIPAAVK.L	2 2
	step04.312.312.2	4.303	0.5085	2392.882	2392.7827	1	443.8	50.0%	1	K.LIPTWNWMVSIMDSTEAQLR.Y	2 2
	step03.19435.19435.2	4.0549	0.5098	1401.419	1400.6279	1	1372.0	77.3%	3	R.GDFLNYALSLMR.S	2 2
	step02.17834.17834.2	3.225	0.3917	1417.562	1416.6273	1	1097.2	72.7%	2	R.GDFLNYALSLM*R.S	2 2
	step02.8297.8297.2	2.3518	0.264	1746.196	1746.9242	1	614.5	50.0%	1	K.AMNQQTTLDTPQLER.K	2 2
	step02.19204.19205.2	5.991	0.5556	2425.774	2425.7395	1	1394.7	63.6%	3	R.VFMEDVGAEPGSILTELGGFEVK.E	2 2
	step04.19024.19024.2	3.9159	0.335	1690.632	1690.8772	1	1025.3	64.3%	3	R.SFYTAIAQAFLSNEK.L	2 2
	step06.20909.20909.3	6.7881	0.5229	3087.353	3086.4377	1	5894.2	49.0%	2	R.SFYTAIAQAFLSNEKLPNLECIQNANK.G	3 3
	step04.13960.13960.2	3.8388	0.4199	1415.681	1414.583	1	928.0	72.7%	2	K.LPNLECIQNANK.G	2 2
	step04.12008.12008.2	3.1334	0.4094	1178.194	1178.3864	1	856.2	80.0%	2	R.VQAMQPAFASK.I	2 2
	step04.10023.10023.2	2.75	0.4376	1194.195	1194.3859	1	776.0	75.0%	2	R.VQAM*QPAFASK.I	2 2
*	step04.1206.1206.2	2.9404	0.513	2597.471	2598.0962	1	792.3	47.8%	1	K.ITGMLLELSPAQLLLLLASEDSLR.A	2
*	step04.472.472.2	5.0041	0.4681	2613.684	2614.0957	1	1150.1	50.0%	2	K.ITGM*LLELSPAQLLLLLASEDSLR.A	2
*	step04.476.476.3	3.8168	0.4348	2613.881	2614.0957	1	1092.8	34.8%	1	K.ITGM*LLELSPAQLLLLLASEDSLR.A	3
	step02.14595.14595.3	5.5554	0.4465	2916.788	2916.0374	1	1284.8	33.0%	1	R.SVVDM*DLDDTDDGDDNAPLFYQPGKR.G	3 3
	step03.19210.19210.2	5.5483	0.3739	2275.151	2274.5413	1	1515.6	64.7%	1	K.VNWHDFAFFDPVMYESLR.Q	2 2
	step06.18043.18043.2	2.5375	0.2024	1495.55	1495.8391	1	1304.1	79.2%	1	R.MLVVAEQPLHAMR.K	2 2
	step06.17131.17131.2	3.8411	0.2417	1511.76	1511.8385	1	845.8	79.2%	1	R.M*LVVAEQPLHAMR.K	2 2
	step06.16321.16321.2	3.4334	0.3276	1527.418	1527.8379	1	789.5	79.2%	2	R.MLVVAEQPLHAMR.K	2 2
	step02.14466.14466.2	2.9814	0.432	1410.452	1410.4683	1	1633.9	81.8%	2	K.NSLEDLTAEDFR.L	2 2

Similarities: gi|310128854|ref|XP_0(31:5)

gi|4504901|ref|NP_002

17.3%

521

57887

5.0

importin subunit alpha-4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.17999.17999.2	3.8657	0.3177	1825.703	1825.0994	1	644.7	60.0%	8	R.KLLSSDRNPPIDDLIK.S	2 2
	step03.15397.15397.2	3.4484	0.268	1696.771	1696.9265	1	1144.2	67.9%	2	K.LLSSDRNPPIDDLIK.S	2 2
	step02.13638.13638.2	2.2987	0.2768	1025.324	1025.1804	1	604.0	93.8%	2	R.NPPIDDLIK.S	2 2
*	step04.18414.18414.2	4.3799	0.4823	2575.781	2574.993	1	337.8	45.2%	3	K.DQVAYLIQQNVIPPFCNLLTVK.D	2
*	step04.771.771.2	4.8117	0.5306	1811.817	1812.1006	1	2675.8	84.4%	2	K.DAQVVQVVLDGLSNILK.M	2
*	step04.770.770.3	5.0303	0.3918	1812.125	1812.1006	1	1565.4	53.1%	3	K.DAQVVQVVLDGLSNILK.M	3
*	step02.17375.17375.3	5.6286	0.3947	2309.823	2309.4844	1	2081.6	41.2%	2	K.MAEDEAETIGNLIEECGGLEK.I	3
*	step02.17357.17357.2	5.5091	0.5753	2309.889	2309.4844	1	1094.3	57.5%	2	K.MAEDEAETIGNLIEECGGLEK.I	2
*	step02.17031.17031.3	5.0677	0.4229	2325.25	2325.484	1	2783.2	48.8%	2	K.M*AEDEAETIGNLIEECGGLEK.I	3
*	step02.17025.17025.2	6.4288	0.6126	2325.688	2325.484	1	2398.0	77.5%	2	K.M*AEDEAETIGNLIEECGGLEK.I	2
*	step02.7626.7626.2	4.3529	0.3895	1773.738	1773.8815	1	1430.7	76.9%	2	K.IEQLQNHENEDIYK.L	2

Similarities: gi|34485722|ref|NP_00(3:8)

gi|150378533|ref|NP_0

17.2%

1102

128302

5.6

ubiquitin carboxyl-terminal hydrolase 7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18725.18725.2	5.0726	0.4205	2638.518	2637.9463	1	1300.3	47.6%	1	K.NQGATCYM*NSLLQTLFFTNQLR.K	2
*	step03.18451.18451.2	4.7435	0.3742	2486.147	2486.695	1	1231.8	57.9%	2	K.SFGWETLDSFMQHDVQELCR.V	2
*	step03.15963.15963.2	5.7587	0.4334	2292.912	2291.5466	1	1163.9	60.5%	3	K.LSEVLQAVTDHDIPQQLVER.L	2
*	step03.19740.19740.2	5.3068	0.5571	2584.933	2584.8467	1	1057.1	54.5%	2	K.NSSLAEFVQSLSQTMGFPQDQIR.L	2
*	step05.14680.14680.2	3.0717	0.3978	1813.485	1814.0188	1	1144.3	64.3%	1	R.SLNYCGHIYTPISCK.I	2
*	step03.17805.17805.2	4.6148	0.5042	2537.11	2537.8496	1	1406.4	54.8%	1	R.AGFIQDTSLILYEEVKPNLTER.I	2
*	step03.18130.18130.2	3.8447	0.4061	1468.751	1467.7574	1	1221.7	90.9%	2	R.LNTDPMLLQFFK.S	2
*	step03.17070.17070.2	2.665	0.2176	1483.559	1483.7568	1	647.7	72.7%	1	R.LNTDPM*LLQFFK.S	2
*	step06.19882.19882.2	2.6826	0.288	1164.614	1164.3811	1	1142.6	87.5%	2	R.DLLQFFKPR.Q	2
*	step03.16005.16005.2	5.6059	0.5391	2268.641	2268.5032	1	1773.9	60.5%	2	K.IIGVHQEDELLECLSPATSR.T	2
*	step05.20097.20097.2	4.0142	0.4945	1496.617	1496.777	1	1149.3	87.5%	5	K.EVFGTFGIPFLLR.I	2
*	step03.15722.15722.2	2.2911	0.2295	1721.909	1720.9448	1	675.5	61.5%	1	R.IQSLLDIQEKEFEK.F	2

U	gi\|148763345\|ref\|NP_2	13	21	17.0%	770	90045	5.3	cell division protein kinase 11A isoform 4 [Homo sapiens]
U	gi\|148763347\|ref\|NP_0	13	21	16.8%	780	91018	5.4	cell division protein kinase 11A isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.12994.12994.2	3.1852	0.1717	1089.276	1089.2213	1	940.1	87.5%	2	K.TLDEILQEK.K	2 2
step02.8331.8332.2	3.2639	0.4955	1286.523	1286.415	1	1377.3	90.0%	2	R.IEEGTYGVVYR.A	2 2 2
step05.16282.16282.2	2.7428	0.2019	1835.688	1836.2091	1	476.2	50.0%	1	K.SLMETMKQPFLPGEVK.T	2 2 2
step05.14194.14194.2	2.3377	0.1783	1867.47	1868.2079	1	404.8	63.3%	1	K.SLMETMKQPFLPGEVK.T	2 2 2
step05.17133.17133.2	2.9449	0.1797	988.408	988.27313	1	727.6	92.9%	2	K.TLMIQLLR.G	2 2 2
step06.18926.18926.2	2.8939	0.4598	1367.833	1367.6191	1	1518.9	79.2%	1	K.TSNLLLSHAGILK.V	2 2 2
step03.14376.14376.2	2.561	0.2966	912.299	912.10846	1	760.0	93.8%	1	R.APELLLGAK.E	2 2 2
step04.14611.14611.2	3.7025	0.4399	1509.851	1509.6714	1	872.0	81.8%	2	K.MTFSEHPYNNLR.K	2 2 2
step02.17565.17565.2	4.0879	0.4534	1656.699	1656.8843	1	1587.5	78.6%	2	R.FGALLSDQGFDLMNK.F	2 2 2
step02.16244.16244.2	4.7851	0.492	1672.051	1672.8837	1	1378.1	75.0%	2	R.FGALLSDQGFDLM*NK.F	2 2 2
step05.15551.15551.1	1.8266	0.2139	1000.493	1001.1623	5	297.5	71.4%	1	K.FLTYFPGR.R	1 1 1
step03.14259.14259.2	3.1129	0.3346	1565.466	1565.7114	1	1028.7	75.0%	2	R.ISAEDGLKHEYFR.E	2 2 2
step02.17013.17013.2	3.369	0.502	1944.7	1944.2394	1	583.8	56.2%	2	R.ETPLPIDPSM*FPTWPAK.S	2 2 2

Similarities: gi|16332360|ref|NP_27(12:1)
gi|16332358|ref|NP_27(13:0)

U	gi\|228008291\|ref\|NP_0	8	14	17.0%	623	69603	8.6	heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
U	gi\|228008400\|ref\|NP_0	8	14	18.9%	562	62656	7.6	heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
U	gi\|228008398\|ref\|NP_0	8	14	20.1%	527	58736	7.6	heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
U	gi\|228008295\|ref\|NP_0	8	14	18.0%	588	65682	8.6	heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
U	gi\|228008293\|ref\|NP_0	8	14	18.9%	561	62528	7.6	heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.17876.17876.2	5.9968	0.5705	2335.223	2335.6409	1	3093.0	70.0%	2	R.AIEALKEFNEDGALAVLQQFK.D	2
step02.9738.9738.2	3.0474	0.455	1312.582	1312.411	1	443.3	63.6%	1	R.TGYTLDVTTGQR.K	2 2 2 2
step02.19059.19059.2	3.8072	0.304	1595.366	1594.7863	1	1189.0	87.5%	2	R.DLFEDELVPLFEK.A	2 2
step03.11905.11905.2	2.7069	0.2688	1293.52	1293.5392	1	1196.0	80.0%	2	R.LMMDPLTGLNR.G	2 2
step05.14286.14286.2	2.5222	0.2908	861.272	861.0632	5	642.9	92.9%	2	R.LFVGSIPK.S	2 2 2 2
step02.15828.15828.2	3.7899	0.4058	1943.937	1944.1312	1	1303.4	62.5%	2	K.VTEGLTDVILYHQPDDK.K	2 2
step03.15634.15634.2	2.8718	0.2873	1446.057	1445.5509	1	910.0	75.0%	1	R.GFCFLEYEDHK.T	2 2 2 2
step02.17044.17044.2	3.8831	0.4738	1474.642	1474.6385	1	1292.4	83.3%	2	R.NLANTVTEEILEK.A	2 2

Similarities: gi|228008396|ref|NP_0(7:1)
gi|156151392|ref|NP_0(3:5)
gi|156151394|ref|NP_0(3:5)

gi|68509926|ref|NP_00

16.9%

795

90933

7.5

putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14998.14998.2	2.3168	0.1918	1600.668	1600.9053	16	274.5	40.0%	1	R.ASTNAM*LISAGLPPLK.A	2
*	step04.16137.16137.2	3.2872	0.2534	1448.536	1447.6628	1	673.7	80.0%	3	R.LQLPVWEYKDR.F	2
*	step02.13877.13877.2	2.7297	0.3346	864.299	864.0239	1	680.4	91.7%	1	R.FTDILVR.H	2
*	step05.14588.14588.2	3.7335	0.5752	1447.504	1446.5901	1	1432.2	80.8%	1	R.HQSFVLVGETGSGK.T	2
*	step02.12851.12851.2	2.8676	0.2197	2045.232	2045.2808	1	828.0	50.0%	2	R.VADEMDVMLGQEVGYSIR.F	2
*	step03.19011.19011.2	3.9446	0.5342	1275.543	1275.5835	1	1532.0	90.9%	2	R.TLATDILMGVLK.E	2
*	step03.18178.18180.2	3.8628	0.3884	1291.324	1291.5829	1	2033.5	90.9%	1	R.TLATDILM*GVLK.E	2
*	step02.7685.7685.2	2.2972	0.2806	1387.509	1386.4866	3	571.3	54.2%	1	R.EVDDLGPEVGDIK.I	2
*	step06.18108.18108.2	3.3769	0.4177	1783.63	1783.0642	1	659.8	75.0%	2	K.IIPLYSTLPPQQQQR.I	2
*	step05.17031.17031.2	3.3649	0.3113	1429.652	1429.7305	1	1873.6	83.3%	1	R.IRVESLLVTAISK.A	2
*	step05.16547.16547.2	4.6816	0.4987	1752.823	1752.0304	1	694.8	64.3%	2	K.ALVTGYFM*QVAHLER.T	2

gi|156415992|ref|NP_0

16.8%

346

39543

9.3

dimethyladenosine transferase 1, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17680.17680.2	4.4353	0.4692	2234.924	2235.4846	1	344.0	45.2%	1	R.KAGNLTNAYVYEVGPGPGGITR.S	2
*	step04.16909.16909.2	3.2191	0.3398	1545.446	1545.8282	1	1027.6	85.7%	2	R.FIPGLQMLSDAAPGK.L	2
*	step04.15463.15463.2	2.2415	0.3406	1561.249	1561.8276	1	379.4	67.9%	1	R.FIPGLQM*LSDAAPGK.L	2
*	step04.16196.16196.2	2.8398	0.4413	1454.448	1454.7137	1	1451.4	77.3%	2	R.LSVMAQYLCNVR.H	2
*	step04.14122.14122.2	2.8081	0.2374	1470.782	1470.7131	1	1409.9	77.3%	1	R.LSVM*AQYLCNVR.H	2
*	step04.15670.15670.2	3.2585	0.3162	1138.446	1137.3157	1	1060.3	93.8%	2	K.VVQNVFQFR.R	2

U	gi\|31563374\|ref\|NP_85	2	4	16.8%	226	23735	5.2	eukaryotic translation initiation factor 6 isoform c [Homo sapiens]
U	gi\|4504771\|ref\|NP_002	2	4	15.5%	245	26599	4.7	eukaryotic translation initiation factor 6 isoform a [Homo sapiens]
U	gi\|31563378\|ref\|NP_85	2	4	15.5%	245	26599	4.7	eukaryotic translation initiation factor 6 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.11993.11993.2	2.7505	0.2982	1647.133	1647.7545	1	929.7	65.4%	2	R.ASFENNCEIGCFAK.L	2
	step02.18527.18527.2	3.2139	0.3756	2585.269	2585.8494	1	623.7	45.7%	2	K.TSIEDQDELSSLLQVPLVAGTVNR.G	2

U	gi\|108773782\|ref\|NP_0	8	15	16.7%	599	67314	8.3	ATP-binding cassette sub-family E member 1 [Homo sapiens]
U	gi\|108773784\|ref\|NP_0	8	15	16.7%	599	67314	8.3	ATP-binding cassette sub-family E member 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.17318.17318.2	5.1427	0.2787	1860.651	1860.1372	1	1427.0	68.8%	3	K.CPFGALSIVNLPSNLEK.E	2
step02.13151.13151.2	3.4711	0.3651	1187.501	1187.2836	1	762.4	77.8%	2	R.GSELQNYFTK.I	2
step04.15234.15234.2	5.0926	0.386	1768.637	1769.0293	1	1724.1	78.6%	2	K.TQAIVCQQLDLTHLK.E	2
step02.17745.17745.2	4.0333	0.5093	1893.65	1894.091	1	1886.3	73.3%	2	K.ADIFM*FDEPSSYLDVK.Q	2
step02.18297.18297.2	3.6563	0.4098	1950.743	1951.1686	1	750.2	62.5%	1	R.EGINIFLDGYVPTENLR.F	2
step05.14704.14704.2	2.4097	0.1692	1083.569	1083.2648	1	676.1	81.2%	1	R.FRDASLVFK.V	2
step04.14919.14919.2	4.4036	0.6231	1660.375	1659.8898	1	1287.3	76.7%	2	K.NTVANSPQTLLAGMNK.F	2
step04.12979.12979.2	4.5335	0.5841	1675.534	1675.8892	1	1801.0	83.3%	2	K.NTVANSPQTLLAGM*NK.F	2

gi|58331171|ref|NP_00

16.7%

486

53289

7.3

T-complex protein 1 subunit zeta isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.1584.1584.3	4.3194	0.4233	2207.058	2207.5527	1	853.4	35.0%	2	K.VHAELADVLTEAVVDSILAIK.K	3 3
step03.12180.12180.2	3.9057	0.2831	1666.559	1666.8507	1	1040.4	71.4%	1	K.VCGDSDKGFVVINQK.G	2 2
step02.17123.17123.2	2.5035	0.1754	1263.597	1263.4214	1	1031.9	81.8%	2	K.GIDPFSLDALSK.E	2 2
step04.19758.19758.2	4.3423	0.3741	1768.826	1769.1206	1	1488.3	71.9%	3	R.AQLGVQAFADALLIIPK.V	2 2
step02.15375.15375.2	5.402	0.3928	1763.819	1762.9849	1	2405.4	80.0%	2	K.VLAQNSGFDLQETLVK.I	2 2

Similarities: gi|4502643|ref|NP_001(5:0)

gi|31415882|ref|NP_85

16.7%

276

30040

5.3

exosome complex exonuclease RRP43 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13545.13545.2	5.0471	0.4824	1837.122	1836.0342	1	2262.4	75.0%	1	R.TTTVNIGSISTADGSALVK.L	2
*	step02.19871.19871.3	5.7905	0.4891	2856.92	2857.122	1	1295.3	34.6%	2	R.SGPPGEEAQVASQFIADVIENSQIIQK.E	3

gi|5803227|ref|NP_006

16.7%

245

27764

4.8

14-3-3 protein theta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19188.19188.2	3.4729	0.4733	1392.626	1392.614	1	1774.7	86.4%	1	R.SICTTVLELLDK.Y	2
*	step04.885.885.3	4.5471	0.4368	3318.283	3317.6665	1	1201.0	29.5%	2	K.TAFDEAIAELDTLNEDSYKDSTLIMQLLR.D	3

U	gi\|208973238\|ref\|NP_0	2	3	16.7%	245	27745	4.8	14-3-3 protein zeta/delta [Homo sapiens]
U	gi\|4507953\|ref\|NP_003	2	3	16.7%	245	27745	4.8	14-3-3 protein zeta/delta [Homo sapiens]
U	gi\|21735625\|ref\|NP_66	2	3	16.7%	245	27745	4.8	14-3-3 protein zeta/delta [Homo sapiens]
U	gi\|208973244\|ref\|NP_0	2	3	16.7%	245	27745	4.8	14-3-3 protein zeta/delta [Homo sapiens]
U	gi\|208973242\|ref\|NP_0	2	3	16.7%	245	27745	4.8	14-3-3 protein zeta/delta [Homo sapiens]
U	gi\|208973240\|ref\|NP_0	2	3	16.7%	245	27745	4.8	14-3-3 protein zeta/delta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.18858.18858.2	3.112	0.215	1419.622	1419.5963	1	1288.1	81.8%	2	R.DICNDVLSLLEK.F	2
	step04.2232.2232.3	5.024	0.4564	3304.243	3304.6677	1	2063.0	35.7%	1	K.TAFDEAIAELDTLSEESYKDSTLIMQLLR.D	3

U	gi\|4506711\|ref\|NP_001	2	3	16.7%	84	9461	9.5	40S ribosomal protein S27 [Homo sapiens]
U	gi\|7705706\|ref\|NP_057	2	3	16.7%	84	9477	9.5	40S ribosomal protein S27-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.18024.18024.2	3.1251	0.1719	1684.683	1684.9409	39	326.6	50.0%	1	K.RLVQSPNSYFMDVK.C	2
	step03.14822.14822.2	4.342	0.4447	1529.63	1528.7545	1	1218.8	75.0%	2	R.LVQSPNSYFMDVK.C	2

gi|14210536|ref|NP_11

16.6%

446

49857

4.9

tubulin beta-6 chain [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.19066.19066.2	6.6304	0.5688	1944.693	1944.1344	1	4115.6	85.3%	2	K.GHYTEGAELVDAVLDVVR.K	2 2
step05.14190.14190.2	3.6412	0.3956	1369.756	1368.6477	1	934.2	77.3%	2	R.IM*NTFSVMPSPK.V	2 2
step05.12484.12484.2	2.9211	0.3543	1384.42	1384.6471	1	924.3	72.7%	1	R.IMNTFSVMPSPK.V	2 2
step03.13345.13345.2	2.7217	0.3898	1130.843	1131.2664	1	1043.8	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2 2
step06.16523.16523.2	2.4043	0.2616	1259.535	1259.4392	1	704.5	75.0%	2	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2 2
step06.18553.18553.1	1.9652	0.2714	1143.867	1144.4148	22	248.2	61.1%	1	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1 1
step05.15742.15742.2	3.6737	0.49	1144.031	1144.4148	1	998.4	94.4%	4	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
step06.17302.17302.2	3.5975	0.3477	1160.506	1160.4142	1	998.9	88.9%	2	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2
step04.16390.16390.2	2.621	0.3132	1070.346	1070.266	1	764.9	93.8%	1	R.YLTVATVFR.G	2 2
step03.16237.16237.2	4.1703	0.413	1698.517	1697.8715	1	1109.5	80.8%	4	K.NSSYFVEWIPNNVK.V	2 2 2 2 2 2

U	gi\|4504111\|ref\|NP_002	2	4	16.6%	217	25206	6.3	growth factor receptor-bound protein 2 isoform 1 [Homo sapiens]
U	gi\|45359859\|ref\|NP_98	2	4	20.5%	176	20557	5.8	growth factor receptor-bound protein 2 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.17715.17715.2	2.835	0.3783	955.474	955.17664	1	566.1	100.0%	2	K.YFLWVVK.F	2
	step02.19058.19058.3	4.6581	0.3529	3383.783	3383.6216	1	880.1	33.9%	2	R.DIEQVPQQPTYVQALFDFDPQEDGELGFR.R	3

U	gi\|20336290\|ref\|NP_05	13	20	16.3%	1155	129438	8.5	putative ATP-dependent RNA helicase DHX30 isoform 2 [Homo sapiens]
U	gi\|20336294\|ref\|NP_61	13	20	15.7%	1194	133938	8.8	putative ATP-dependent RNA helicase DHX30 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.16146.16146.2	2.3817	0.2781	856.347	856.0067	1	944.1	85.7%	2	K.GWGLLGPR.N	2
step06.18144.18144.2	2.2617	0.3388	1277.233	1276.4901	20	233.9	55.0%	1	K.NLMQFHTVGTK.T	2
step05.16623.16623.2	4.306	0.4986	1844.698	1845.0728	1	931.6	73.3%	2	R.NNEPLTHAMYNLASLR.E	2
step02.17776.17776.3	4.5493	0.4739	2584.052	2583.8752	1	1929.0	40.2%	1	K.DSGPLSDPITGKPYVPLLEAEEVR.L	3
step03.17338.17338.2	2.4234	0.2441	1245.078	1245.4525	1	723.1	72.2%	1	R.LSQSLLELWR.R	2
step03.18466.18466.2	4.9863	0.5444	1902.757	1902.1758	1	856.3	71.9%	2	R.GEPGGILCFLPGWQEIK.G	2
step06.19427.19427.2	2.3775	0.2755	1900.042	1900.298	1	587.2	60.0%	1	K.YLILPVHSNIPMMDQK.A	2
step05.17571.17571.2	2.2287	0.3963	1329.551	1329.636	1	268.5	75.0%	1	K.MVPFQVPEILR.T	2
step03.15505.15505.2	2.5868	0.3421	1226.814	1226.4475	1	1334.5	85.0%	2	R.TPLENLVLQAK.I	2
step02.19667.19667.2	4.2304	0.4125	1982.899	1982.2672	1	1311.7	61.8%	2	K.AVDEAVILLQEIGVLDQR.E	2
step05.15395.15395.2	3.4905	0.3152	1726.727	1725.8865	1	517.2	66.7%	2	K.ALLSHDSGSDHLAFVR.A	2
step02.17267.17267.2	2.8064	0.3177	1824.571	1825.0116	1	1067.3	67.9%	1	R.ENYLEENLLYAPSLR.F	2
step06.19861.19861.2	4.7101	0.4473	1645.526	1645.0062	1	1104.7	64.3%	2	K.GVLMAGLYPNLIQVR.Q	2

U	gi\|78000181\|ref\|NP_00	3	6	16.3%	215	23432	10.9	60S ribosomal protein L14 [Homo sapiens]
U	gi\|78000183\|ref\|NP_00	3	6	16.3%	215	23432	10.9	60S ribosomal protein L14 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.17630.17630.2	3.0816	0.4979	1232.931	1233.4003	1	814.2	72.7%	2	R.VAYVSFGPHAGK.L	2
step02.16660.16660.2	3.6156	0.4931	1355.23	1355.5653	1	1737.3	86.4%	3	K.LVAIVDVIDQNR.A	2
step03.10252.10254.2	3.3803	0.1621	1216.46	1216.363	1	1145.8	85.0%	1	R.ALVDGPCTQVR.R	2

gi|34419635|ref|NP_00

16.2%

643

71028

6.1

heat shock 70 kDa protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step02.6416.6416.2	3.5419	0.3117	1229.049	1229.3252	1	1603.5	90.0%	2	R.VEILANDQGNR.T	2 2 2 2 2 2 2
	step02.11734.11734.1	2.6963	0.3675	1488.639	1488.5806	1	149.2	54.2%	1	R.TTPSYVAFTDTER.L	1 1 1 1 1 1
	step02.11726.11726.2	3.224	0.5674	1489.092	1488.5806	1	772.6	79.2%	3	R.TTPSYVAFTDTER.L	2 2 2 2 2 2
	step02.15908.15908.1	2.1586	0.1975	1687.944	1688.906	1	301.5	50.0%	1	R.IINEPTAAAIAYGLDR.R	1 1
	step02.15844.15844.2	5.1972	0.4229	1689.632	1688.906	1	1998.9	83.3%	2	R.IINEPTAAAIAYGLDR.R	2 2
	step02.15861.15861.3	4.0282	0.4012	1690.064	1688.906	1	1505.0	48.3%	2	R.IINEPTAAAIAYGLDR.R	3 3
	step02.7404.7404.2	3.2654	0.3679	1676.675	1676.6827	1	1029.0	70.0%	2	K.ATAGDTHLGGEDFDNR.L	2 2 2
	step03.16074.16074.2	3.8928	0.4097	1543.545	1543.6992	1	1231.5	86.4%	2	R.ARFEELCSDLFR.S	2 2
	step02.16200.16200.2	3.8255	0.5565	1317.653	1316.4347	1	1348.4	88.9%	3	R.FEELCSDLFR.S	2 2
	step03.15768.15768.2	3.0311	0.4053	1082.423	1082.2336	1	772.8	87.5%	3	K.LLQDFFNGK.E	2 2 2 2
	step02.16449.16449.1	2.1776	0.2814	1082.615	1082.2336	1	463.0	68.8%	4	K.LLQDFFNGK.E	1 1 1 1
	step03.15928.15928.2	4.3288	0.3484	1567.078	1566.7825	1	1633.9	83.3%	1	K.LLQDFFNGKELNK.S	2 2 2 2
*	step02.18747.18747.2	4.5757	0.4083	2307.83	2307.5662	1	1598.7	54.5%	2	K.SINPDEAVAYGAAVQAAVLM*GDK.C	2

gi|5453549|ref|NP_006

16.2%

271

30540

6.3

peroxiredoxin-4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16018.16018.2	4.8082	0.5032	2109.322	2109.366	1	2078.6	72.2%	2	K.ISKPAPYWEGTAVIDGEFK.E	2
*	step06.19298.19298.2	3.0191	0.2272	1464.811	1465.7196	1	1243.0	75.0%	1	R.IPLLSDLTHQISK.D	2
	step04.17247.17247.2	3.2577	0.4428	1360.807	1360.6266	1	1547.3	81.8%	3	R.GLFIIDDKGILR.Q	2 2

Similarities: gi|32455264|ref|NP_85(1:2)

gi|5453998|ref|NP_006

16.1%

1038

119516

4.8

importin-7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18540.18540.2	4.1786	0.4923	1733.268	1733.99	1	784.9	64.3%	4	R.ENIVEAIIHSPELIR.V	2
*	step05.15842.15842.2	4.2098	0.4289	1273.217	1273.549	1	1529.3	86.4%	2	K.AFAVGVQQVLLK.V	2
*	step04.19345.19345.3	5.8385	0.5532	2985.885	2986.3782	1	1815.7	39.0%	3	R.M*KFDVFEDFISPTTAAQTLLFTACSK.R	3
*	step02.16151.16151.2	4.2288	0.4409	2014.857	2014.2417	1	633.6	53.1%	2	K.TMGFCYQILTEPNADPR.K	2
*	step02.14651.14651.2	3.1665	0.4404	2030.002	2030.2411	1	711.7	53.1%	1	K.TM*GFCYQILTEPNADPR.K	2
*	step06.21533.21533.2	3.9124	0.4643	1681.575	1682.0216	1	1693.9	66.7%	3	K.DGALHMIGSLAEILLK.K	2
*	step05.19169.19169.2	3.7142	0.281	1697.221	1698.021	1	1133.0	70.0%	1	K.DGALHM*IGSLAEILLK.K	2
*	step02.13643.13643.2	3.6766	0.3275	1489.899	1489.6133	1	1227.4	79.2%	2	K.SDQNLQTALELTR.R	2
*	step02.7605.7605.2	2.5937	0.109	1519.47	1519.593	6	571.2	58.3%	1	R.ETENDDLTNVIQK.M	2
*	step02.19251.19251.2	4.6969	0.4642	1831.745	1832.0839	1	1191.7	76.7%	2	R.GIDQCIPLFVEAALER.L	2
*	step02.19254.19256.3	4.6909	0.4619	1832.058	1832.0839	1	2721.3	58.3%	1	R.GIDQCIPLFVEAALER.L	3
*	step04.13878.13878.2	2.8362	0.2933	1091.0	1091.2454	1	823.5	87.5%	2	K.AIFQTIQNR.N	2
*	step04.16858.16860.2	6.4912	0.5192	2056.688	2056.2266	1	3129.8	87.5%	2	R.NPVWYQALTHGLNEEQR.K	2
*	step04.16873.16873.3	4.6056	0.4708	2057.447	2056.2266	1	1565.4	57.8%	2	R.NPVWYQALTHGLNEEQR.K	3
*	step06.19694.19694.2	5.1021	0.4918	2184.767	2184.3994	1	1301.8	70.6%	2	R.NPVWYQALTHGLNEEQRK.Q	2
*	step03.13795.13795.2	3.6811	0.4984	1500.726	1500.6825	1	1485.5	87.5%	2	R.KQLQDIATLADQR.R	2

U	gi\|20149530\|ref\|NP_00	4	6	16.1%	415	47330	9.7	casein kinase I isoform delta isoform 1 [Homo sapiens]
U	gi\|20544145\|ref\|NP_62	4	6	16.4%	409	46832	9.6	casein kinase I isoform delta isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.18251.18251.2	2.2156	0.1643	2043.766	2044.3848	7	234.4	31.2%	1	R.KFS#LKTVLLLADQMISR.I	2 2
step04.14474.14474.2	3.3549	0.3291	1589.594	1589.7345	1	924.1	69.2%	2	R.YASINTHLGIEQSR.R	2 2
step06.21362.21362.2	3.4648	0.3663	2932.372	2932.342	1	284.8	37.5%	2	R.RDDLESLGYVLM*YFNLGSLPWQGLK.A	2 2
step02.8420.8420.2	2.8949	0.3629	1418.793	1419.52	1	628.5	85.0%	1	R.FDDKPDYSYLR.Q	2 2

Similarities: gi|23199991|ref|NP_68(4:0)

gi|42558252|ref|NP_97

16.1%

118

13475

10.2

coiled-coil-helix-coiled-coil-helix domain-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13672.13672.2	2.4367	0.0994	1673.743	1673.8466	1	841.7	63.3%	1	R.SIQETLGESGSLLPNK.L	2
*	step04.15420.15420.2	4.4061	0.4692	2029.384	2029.2808	1	597.7	47.2%	2	R.SIQETLGESGSLLPNKLNK.L	2

U	gi\|131412228\|ref\|NP_0	4	6	16.0%	420	45837	4.9	keratin, type I cytoskeletal 13 isoform b [Homo sapiens]
U	gi\|4504911\|ref\|NP_002	4	6	16.0%	420	45865	4.9	keratin 13 isoform b; keratin, type I cytoskeletal 13; cytokeratin 13 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12430.12430.2	6.3794	0.5939	2148.488	2148.2295	1	1948.0	65.9%	2	R.LQSSSASYGGGFGGGSCQLGGGR.G	2 2 2
step03.11203.11203.2	2.2797	0.2704	1144.613	1145.2913	1	478.3	77.8%	1	K.ILTATIENNR.V	2 2 2
step06.1757.1757.2	3.7896	0.3544	2602.007	2602.968	1	2038.6	59.1%	1	R.YALQLQQIQGLISSIEAQLSELR.S	2 2 2
step03.13960.13960.2	3.1251	0.3723	1380.598	1380.5316	1	884.8	80.0%	2	K.TRLEQEIATYR.S	2 2 2 2 2 2

U	gi\|117189975\|ref\|NP_1	5	10	16.0%	306	33670	5.1	heterogeneous nuclear ribonucleoproteins C1/C2 isoform a [Homo sapiens]
U	gi\|117190192\|ref\|NP_0	5	10	16.0%	306	33670	5.1	heterogeneous nuclear ribonucleoproteins C1/C2 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.16540.16540.2	3.1288	0.3349	1317.604	1317.6018	1	1245.4	77.3%	2	R.VFIGNLNTLVVK.K	2 2 2
step03.15612.15612.2	3.7224	0.4612	1330.411	1330.4728	1	1635.9	85.0%	3	K.GFAFVQYVNER.N	2 2
step02.16576.16576.2	5.5167	0.47	1684.71	1683.9944	1	3027.3	86.7%	2	R.MIAGQVLDINLAAEPK.V	2 2
step02.15358.15358.2	5.6695	0.402	1700.661	1699.9938	1	2141.7	76.7%	2	R.M*IAGQVLDINLAAEPK.V	2 2
step02.15180.15180.2	2.4655	0.3503	1160.72	1160.2996	3	528.7	77.8%	1	K.VDSLLENLEK.I	2 2 2

Similarities: gi|117190174|ref|NP_0(5:0)
gi|226052117|ref|NP_0(2:3)

gi|14702171|ref|NP_11

16.0%

275

31441

4.9

DNA-directed RNA polymerase II subunit RPB3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19023.19023.2	3.9458	0.4376	1511.795	1511.785	1	719.8	80.8%	1	R.LGLIPLISDDIVDK.L	2
*	step03.19388.19388.2	4.9149	0.5848	2159.885	2159.5112	1	1493.9	75.0%	3	R.LGLIPLISDDIVDKLQYSR.D	2
*	step05.19529.19529.2	2.3136	0.1764	2805.575	2805.1685	29	219.8	25.0%	1	R.FYYNVESCGSLRPETIVLSALSGLK.K	2

gi|4506707|ref|NP_001

16.0%

125

13742

10.1

40S ribosomal protein S25 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15325.15326.2	3.6021	0.3686	1319.865	1319.5314	1	1238.2	80.0%	4	R.DKLNNLVLFDK.A	2
*	step03.15463.15463.2	2.6903	0.3606	1076.366	1076.2706	1	998.8	87.5%	1	K.LNNLVLFDK.A	2
*	step02.14716.14716.2	3.1348	0.3725	973.366	973.1487	1	1247.2	93.8%	2	R.AALQELLSK.G	2

gi|32526896|ref|NP_05

15.9%

659

73994

6.7

armadillo repeat-containing protein 8 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15660.15660.2	3.9865	0.4731	1123.022	1123.3737	1	1739.1	90.0%	2	K.ANLIVLGAVPR.L	2 2
	step04.16040.16040.2	3.6187	0.4668	2037.672	2038.2266	1	1483.3	71.4%	2	R.YTQEYICQIFSHCCK.G	2 2
	step03.11846.11846.2	2.4015	0.1645	1362.568	1361.5901	1	439.0	72.7%	1	R.DKPIEMQLTSAK.C	2 2
	step02.18100.18100.2	4.0401	0.4883	2145.715	2146.383	1	1245.0	63.9%	1	R.VEGAETLAYLIEPDVELQR.I	2 2
	step02.18123.18123.3	3.514	0.323	2145.749	2146.383	1	1347.6	40.3%	1	R.VEGAETLAYLIEPDVELQR.I	3 3
	step06.21238.21238.2	4.4458	0.517	1938.933	1939.2643	1	701.2	62.5%	3	R.IASITDHLIAM*LADYFK.Y	2 2
*	step02.13900.13900.2	2.8844	0.2601	1364.724	1364.5907	1	995.1	81.8%	1	R.LLSDSDLNVLM*K.T	2
*	step02.19827.19827.2	3.8912	0.3841	2165.585	2166.5273	1	1419.3	69.4%	2	K.QIMQAVTLILEGEHNIEVK.E	2

Similarities: gi|47458043|ref|NP_99(6:2)

U	gi\|208431833\|ref\|NP_0	8	12	15.9%	660	72391	9.3	polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
U	gi\|4504715\|ref\|NP_003	8	12	16.3%	644	70783	9.3	polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
U	gi\|208431836\|ref\|NP_0	8	12	16.6%	631	69579	9.5	polyadenylate-binding protein 4 isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.17884.17884.2	2.6757	0.3884	1144.586	1144.3481	1	710.4	95.0%	1	K.FSPAGPVLSIR.V	2
step05.15000.15000.2	2.3319	0.1253	2085.794	2086.2527	8	112.7	32.4%	1	R.RSLGYAYVNFQQPADAER.A	2 2
step02.13986.13986.2	5.8624	0.4928	1930.676	1930.0663	1	2099.0	75.0%	2	R.SLGYAYVNFQQPADAER.A	2 2
step02.13346.13346.2	2.3369	0.3167	1283.341	1283.4761	1	770.5	80.0%	1	R.ALDTM*NFDVIK.G	2 2
step02.18570.18570.2	4.8904	0.6105	1808.755	1808.0176	1	2210.4	80.0%	1	K.ALYDTFSAFGNILSCK.V	2 2
step04.14637.14637.2	2.5465	0.2147	1213.629	1213.4072	1	562.8	72.2%	1	K.AKEFTNVYIK.N	2 2
step02.16569.16569.2	5.4448	0.5424	1664.59	1663.8021	1	1642.5	82.1%	3	K.GFGFVCFSSPEEATK.A	2 2 2 2
step03.18175.18175.3	4.5306	0.3265	2757.952	2758.162	1	1164.5	35.9%	2	K.ITGMLLEIDNSELLHM*LESPESLR.S	3 3

Similarities: gi|46367787|ref|NP_00(7:1)
gi|45238849|ref|NP_11(1:7)
gi|185135971|ref|NP_0(1:7)

gi|146198654|ref|NP_0

15.9%

540

60229

8.0

zinc finger protein 768 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16104.16104.2	3.9769	0.5674	2188.754	2188.3604	1	1405.7	75.0%	2	R.EALPWGLEPQDVQSSDEMR.S	2
*	step02.7793.7793.2	2.5062	0.1596	1283.286	1282.3402	3	292.0	65.0%	2	R.FEPESPGFESR.S	2
*	step02.9504.9504.2	3.1655	0.1209	1651.256	1651.8197	1	2261.6	88.5%	1	K.FQEGAEM*LLNPEEK.S	2
*	step02.14248.14248.2	3.5419	0.4235	1143.366	1143.2739	1	1530.8	83.3%	2	K.AFADSSYLLR.H	2
*	step02.14138.14138.2	2.9516	0.3988	1129.369	1129.2472	1	696.9	83.3%	2	K.AFGDSSYLLR.H	2
*	step06.17808.17808.2	3.4133	0.5088	1286.58	1286.4647	1	1606.4	81.8%	2	R.FGQSSVLAIHAR.T	2
*	step02.8711.8711.2	2.6584	0.3035	1125.233	1124.229	1	539.0	83.3%	2	K.AFSQSSDLIR.H	2

gi|4503481|ref|NP_001

15.8%

437

50119

6.7

elongation factor 1-gamma [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13158.13158.2	3.9997	0.5336	1348.437	1348.5328	1	2511.3	83.3%	2	K.ALIAAQYSGAQVR.V	2
*	step03.17817.17817.2	2.4786	0.3115	1119.508	1119.3785	1	726.4	83.3%	1	R.ILGLLDAYLK.T	2
*	step06.16285.16285.2	2.3369	0.163	925.464	925.0658	1	449.2	92.9%	1	K.DPFAHLPK.S	2
*	step03.15247.15247.2	3.4982	0.3458	1242.596	1242.4055	1	1121.6	88.9%	2	K.STFVLDEFKR.K	2
*	step03.7832.7832.2	3.6744	0.3928	1574.651	1573.7302	1	563.8	76.9%	2	R.KLDPGSEETQTLVR.E	2
*	step03.16357.16357.2	2.6928	0.2744	1686.093	1685.8192	2	311.7	57.7%	1	R.EYFSWEGAFQHVGK.A	2

gi|238624257|ref|NP_0

15.8%

438

48598

9.0

insulin-like growth factor 2 mRNA-binding protein 1 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15264.15264.2	4.1552	0.2412	1876.815	1877.0848	1	2085.1	75.0%	1	K.LYIGNLNESVTPADLEK.V	2 2
step02.17481.17481.2	3.0331	0.2106	1864.523	1864.0892	1	794.6	60.0%	1	K.ITISSLQDLTLYNPER.T	2 2
step04.15348.15348.2	4.1019	0.4981	1432.453	1431.7251	1	944.8	70.8%	2	R.MVIITGPPEAQFK.A	2 2 2 2
step04.14214.14214.2	3.6978	0.1416	1448.453	1447.7245	1	1370.1	75.0%	2	R.M*VIITGPPEAQFK.A	2 2 2 2
step04.15058.15058.2	2.5297	0.2325	1209.417	1209.3755	1	657.6	77.8%	1	K.LKEENFFGPK.E	2 2
step06.18049.18049.2	2.6531	0.2786	1523.564	1522.7565	1	443.4	66.7%	2	K.IIGHFYASQMAQR.K	2 2
step06.17316.17316.2	2.3216	0.2116	1538.784	1538.7559	1	963.0	70.8%	1	K.IIGHFYASQM*AQR.K	2 2

Similarities: gi|56237027|ref|NP_00(7:0)
gi|56118219|ref|NP_00(2:5)
gi|30795212|ref|NP_00(2:5)

gi|4505947|ref|NP_002

15.7%

172

19294

5.5

DNA-directed RNA polymerase II subunit RPB7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16049.16049.2	2.9459	0.4566	1266.67	1266.4702	1	513.8	75.0%	2	R.YFGPNLLNTVK.Q	2
*	step05.16882.16882.2	3.4841	0.3963	1831.354	1831.1193	1	618.5	60.0%	2	K.VGLFTEIGPM*SCFISR.H	2

gi|42558279|ref|NP_81

15.5%

444

49776

4.9

tubulin beta-8 chain isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15297.15297.2	4.9629	0.5037	1603.704	1602.835	1	1478.3	82.1%	4	R.AVLVDLEPGTMDSVR.S	2 2 2 2 2
2	step06.19010.19010.3	6.7555	0.5846	3442.667	3441.7993	1	3270.6	35.9%	4	R.KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
2	step03.16218.16218.3	7.1499	0.5735	3314.09	3313.6262	1	2606.3	34.7%	5	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
	step03.13345.13345.2	2.7217	0.3898	1130.843	1131.2664	1	1043.8	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2 2
	step06.16523.16523.2	2.4043	0.2616	1259.535	1259.4392	1	704.5	75.0%	2	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2 2
	step06.18553.18553.1	1.9652	0.2714	1143.867	1144.4148	22	248.2	61.1%	1	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1 1
	step05.15742.15742.2	3.6737	0.49	1144.031	1144.4148	1	998.4	94.4%	4	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
	step06.17302.17302.2	3.5975	0.3477	1160.506	1160.4142	1	998.9	88.9%	2	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2

gi|66392203|ref|NP_00

15.4%

267

30137

8.9

nucleoside diphosphate kinase B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14110.14110.2	2.9181	0.3992	1345.534	1345.572	1	638.6	68.2%	4	R.TFIAIKPDGVQR.G	2 2 2
step06.18715.18715.2	2.4238	0.3872	1150.679	1150.3544	1	520.1	77.8%	2	K.DRPFFAGLVK.Y	2 2
step04.18736.18736.2	3.3645	0.4088	2111.285	2110.4856	1	636.1	41.7%	1	K.YM*NSGPVVAMVWEGLNVVK.T	2 2
step04.17144.17144.2	5.4022	0.537	2125.834	2126.485	1	1604.3	66.7%	1	K.YMNSGPVVAMVWEGLNVVK.T	2 2

Similarities: gi|4505409|ref|NP_002(3:1)
gi|38045913|ref|NP_93(2:2)

U	gi\|10864049\|ref\|NP_06	2	2	15.4%	221	24852	9.4	family with sequence similarity 60, member A [Homo sapiens]
U	gi\|209447090\|ref\|NP_0	2	2	15.4%	221	24852	9.4	family with sequence similarity 60, member A [Homo sapiens]
U	gi\|209447087\|ref\|NP_0	2	2	15.4%	221	24852	9.4	family with sequence similarity 60, member A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.19810.19810.2	2.7929	0.3228	1617.685	1617.8679	1	1105.1	62.5%	1	R.TPVFSFLDLTYWK.R	2
	step02.15525.15525.2	3.1482	0.3664	2307.966	2308.486	1	710.4	47.5%	1	K.AAAEKPEEQGPEPLPISTQEW.-	2

gi|310128854|ref|XP_0

15.3%

2806

310363

6.0

PREDICTED: e3 ubiquitin-protein ligase UBR5-like isoform 1, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16845.16845.2	4.5569	0.5377	1740.721	1740.8516	1	1868.0	76.7%	2	R.TSDSPWFLSGSETLGR.L	2 2
step06.21139.21139.3	5.7008	0.5277	3342.38	3341.8435	1	1666.2	33.6%	4	R.GSGLLGSQPQPVIPASVIPEELISQAQVVLQGK.S	3 3
step02.17187.17187.2	3.8559	0.3536	1656.794	1656.8656	1	1544.9	78.6%	1	R.TNLDVNLAVNNLLSR.D	2 2
step04.16903.16903.2	2.6668	0.0842	953.848	953.20374	1	705.7	92.9%	2	R.VLLLPLER.D	2 2
step02.16806.16806.2	3.7806	0.4732	1595.011	1593.7599	1	1336.0	75.0%	2	K.VATWVDETLSSVASK.L	2 2
step02.16652.16652.2	3.186	0.4369	1188.246	1188.348	1	1149.1	88.9%	2	R.YCIFDLATGK.A	2 2
step04.19374.19374.2	4.2331	0.4417	2126.326	2127.3445	1	1323.2	57.1%	1	R.LSAVEAIANAISVVSSNGPGNR.A	2 2
step02.7517.7517.2	3.3883	0.3689	2010.981	2010.0853	1	718.6	50.0%	1	K.TASPEDSDMPDHDLEPPR.F	2 2
step03.13848.13848.2	3.1183	0.301	948.576	948.1009	1	1366.1	92.9%	2	R.FAQLALER.V	2 2
step02.13466.13466.2	2.596	0.2987	1087.392	1087.2534	1	715.7	81.2%	2	R.VLQDWNALK.S	2 2
step05.15521.15521.3	3.8423	0.2608	2296.666	2296.568	1	1896.5	43.4%	1	R.IGHLLPEEQVYLNQQSGTIR.L	3 3
step04.15303.15303.2	3.2547	0.2914	1406.67	1406.639	1	822.2	75.0%	3	R.LDCFTHCLIVK.C	2 2
step04.2806.2806.2	3.3622	0.4581	2832.164	2831.2922	1	859.3	39.6%	1	R.VFQALLPYAVEELCNVAESLIVPVR.M	2 2
step02.15476.15476.2	3.9501	0.4334	2708.386	2707.9316	1	817.5	38.9%	1	R.AASTAPSSTSTPAASSAGLIYIDPSNLR.R	2 2
step05.14826.14826.2	2.2558	0.2041	1603.765	1603.846	1	297.7	57.7%	1	K.YNHLVYSQIPAAVK.L	2 2
step04.312.312.2	4.303	0.5085	2392.882	2392.7827	1	443.8	50.0%	1	K.LIPTWNWMVSIMDSTEAQLR.Y	2 2
step03.19435.19435.2	4.0549	0.5098	1401.419	1400.6279	1	1372.0	77.3%	3	R.GDFLNYALSLMR.S	2 2
step02.17834.17834.2	3.225	0.3917	1417.562	1416.6273	1	1097.2	72.7%	2	R.GDFLNYALSLM*R.S	2 2
step02.8297.8297.2	2.3518	0.264	1746.196	1746.9242	1	614.5	50.0%	1	K.AMNQQTTLDTPQLER.K	2 2
step02.19204.19205.2	5.991	0.5556	2425.774	2425.7395	1	1394.7	63.6%	3	R.VFMEDVGAEPGSILTELGGFEVK.E	2 2
step04.19024.19024.2	3.9159	0.335	1690.632	1690.8772	1	1025.3	64.3%	3	R.SFYTAIAQAFLSNEK.L	2 2
step06.20909.20909.3	6.7881	0.5229	3087.353	3086.4377	1	5894.2	49.0%	2	R.SFYTAIAQAFLSNEKLPNLECIQNANK.G	3 3
step04.13960.13960.2	3.8388	0.4199	1415.681	1414.583	1	928.0	72.7%	2	K.LPNLECIQNANK.G	2 2
step04.12008.12008.2	3.1334	0.4094	1178.194	1178.3864	1	856.2	80.0%	2	R.VQAMQPAFASK.I	2 2
step04.10023.10023.2	2.75	0.4376	1194.195	1194.3859	1	776.0	75.0%	2	R.VQAM*QPAFASK.I	2 2
step02.14595.14595.3	5.5554	0.4465	2916.788	2916.0374	1	1284.8	33.0%	1	R.SVVDM*DLDDTDDGDDNAPLFYQPGKR.G	3 3
step03.19210.19210.2	5.5483	0.3739	2275.151	2274.5413	1	1515.6	64.7%	1	K.VNWHDFAFFDPVMYESLR.Q	2 2
step06.18043.18043.2	2.5375	0.2024	1495.55	1495.8391	1	1304.1	79.2%	1	R.MLVVAEQPLHAMR.K	2 2
step06.17131.17131.2	3.8411	0.2417	1511.76	1511.8385	1	845.8	79.2%	1	R.M*LVVAEQPLHAMR.K	2 2
step06.16321.16321.2	3.4334	0.3276	1527.418	1527.8379	1	789.5	79.2%	2	R.MLVVAEQPLHAMR.K	2 2
step02.14466.14466.2	2.9814	0.432	1410.452	1410.4683	1	1633.9	81.8%	2	K.NSLEDLTAEDFR.L	2 2

Similarities: gi|15147337|ref|NP_05(31:0)

gi|24234696|ref|NP_70

15.3%

458

49586

5.0

keratin 13 isoform a; keratin, type I cytoskeletal 13; cytokeratin 13 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12430.12430.2	6.3794	0.5939	2148.488	2148.2295	1	1948.0	65.9%	2	R.LQSSSASYGGGFGGGSCQLGGGR.G	2 2 2
step03.11203.11203.2	2.2797	0.2704	1144.613	1145.2913	1	478.3	77.8%	1	K.ILTATIENNR.V	2 2 2
step06.1757.1757.2	3.7896	0.3544	2602.007	2602.968	1	2038.6	59.1%	1	R.YALQLQQIQGLISSIEAQLSELR.S	2 2 2
step02.9244.9244.2	2.2743	0.1525	1488.483	1489.5731	1	692.8	51.3%	1	K.M*IGFPSSAGSVS#PR.S	2 2

Similarities: gi|131412225|ref|NP_7(4:0)
gi|131412228|ref|NP_0(3:1)

gi|22547114|ref|NP_66

15.3%

261

29283

9.6

39S ribosomal protein L10, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20174.20174.2	2.9147	0.4075	2458.241	2458.8606	1	399.7	47.5%	1	K.YQNLLPLFVGHNM*LLVSEEPK.V	2
*	step03.19417.19417.2	4.1292	0.5389	2088.717	2088.4265	1	614.8	66.7%	2	R.TVPFLPLLGGCIDDTILSR.Q	2

gi|50053795|ref|NP_00

15.2%

611

69151

5.7

eukaryotic translation initiation factor 4B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.20544.20544.3	5.2929	0.5463	2921.241	2922.2358	1	1053.5	35.4%	8	K.SPPYTAFLGNLPYDVTEESIKEFFR.G	3
*	step03.20311.20311.2	5.0826	0.5251	2922.148	2922.2358	1	748.3	45.8%	7	K.SPPYTAFLGNLPYDVTEESIKEFFR.G	2
*	step04.12981.12981.1	2.1197	0.3335	829.754	829.9675	1	133.3	64.3%	1	R.GLNISAVR.L	1
*	step04.12978.12978.2	2.8723	0.3259	830.178	829.9675	1	1131.1	92.9%	2	R.GLNISAVR.L	2
*	step03.20542.20542.3	5.119	0.4212	3346.327	3345.6614	1	1004.1	31.0%	1	R.LKGFGYAEFEDLDSLLSALSLNEESLGNRR.I	3
*	step03.101.102.2	5.5953	0.5802	2947.759	2948.1438	1	1384.6	48.1%	2	K.GFGYAEFEDLDSLLSALSLNEESLGNR.R	2
*	step03.106.106.3	5.5456	0.4925	2949.251	2948.1438	1	1524.2	33.7%	2	K.GFGYAEFEDLDSLLSALSLNEESLGNR.R	3
*	step06.21222.21222.3	4.7576	0.4317	3103.692	3104.33	1	814.6	28.7%	4	K.GFGYAEFEDLDSLLSALSLNEESLGNRR.I	3
*	step03.8085.8085.2	2.5025	0.1985	1608.697	1608.6932	1	617.0	65.4%	2	R.ARPATDSFDDYPPR.R	2
*	step05.13952.13952.2	2.9661	0.2586	1532.73	1532.7262	1	995.4	66.7%	2	R.AASIFGGAKPVDTAAR.E	2

U	gi\|22547136\|ref\|NP_05	3	4	15.1%	311	34919	9.7	39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]
U	gi\|22547140\|ref\|NP_66	3	4	17.9%	263	29502	10.1	39S ribosomal protein L4, mitochondrial isoform b [Homo sapiens]
U	gi\|22547138\|ref\|NP_66	3	4	15.1%	311	34919	9.7	39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.13902.13902.2	2.565	0.284	2036.519	2037.2167	1	426.6	44.4%	1	R.ATENPEQVASEGLPEPVLR.K	2
step05.16094.16094.2	4.221	0.3937	1679.601	1679.9009	1	907.1	70.0%	2	R.VGLADLHPDVFATAPR.L	2
step05.16408.16408.2	2.738	0.1195	1498.693	1498.7748	1	834.9	68.2%	1	R.LDILHQVAM*WQK.N	2

gi|31652226|ref|NP_85

15.1%

205

22815

9.9

39S ribosomal protein L21, mitochondrial isoform d [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17837.17837.2	3.0643	0.3975	2335.881	2336.5825	1	617.6	47.5%	1	K.TSLSSPPWPEVVLPDPVEETR.H	2
	step04.12952.12952.2	2.6568	0.2798	1129.511	1128.347	1	620.7	88.9%	2	R.IVTTPQTVLR.I	2

gi|74319833|ref|NP_00

15.0%

2555

291075

5.9

probable ubiquitin carboxyl-terminal hydrolase FAF-Y [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.18841.18841.2	2.2413	0.3834	938.048	938.19073	6	460.2	78.6%	1	R.WVVPVLPK.G	2 2
	step06.19110.19110.2	2.4929	0.3269	1432.39	1432.6482	1	1038.4	72.7%	1	R.FFRDGLTISFTK.I	2 2
*2	step03.17742.17742.2	2.7854	0.2093	1058.428	1058.2552	8	985.7	81.2%	2	K.GWLVDLINK.F	2 2
	step05.16486.16486.2	2.9938	0.4353	1518.464	1518.7012	1	583.8	66.7%	3	K.FGTLNGFQILHDR.F	2 2
	step02.15532.15532.1	2.0207	0.2366	1004.616	1005.2142	1	517.2	75.0%	1	K.NDALSMIIK.S	1 1
	step02.15491.15491.2	2.5706	0.2949	1005.356	1005.2142	1	895.9	81.2%	2	K.NDALSMIIK.S	2 2
	step02.13110.13110.2	2.7849	0.3337	1021.53	1021.21356	1	1424.2	93.8%	2	K.NDALSM*IIK.S	2 2
2	step03.14804.14804.1	1.9564	0.104	791.606	791.9178	2	109.6	80.0%	2	K.NLEIFR.L	1 1
	step04.14865.14865.1	2.3552	0.3273	1106.832	1107.2847	1	537.0	77.8%	2	R.LLQISSFNGK.M	1 1
	step04.14838.14838.2	2.7357	0.2461	1107.497	1107.2847	1	942.6	77.8%	2	R.LLQISSFNGK.M	2 2
	step05.13318.13318.2	2.8177	0.518	1313.49	1312.4558	1	677.1	75.0%	2	K.VISSVSYYTHR.H	2 2
	step02.18164.18164.2	4.8614	0.4114	1828.718	1829.0466	1	2415.4	75.0%	2	K.ALTLQDLDNIWAAQAGK.H	2 2
	step05.17681.17681.2	3.9556	0.441	2506.032	2506.842	1	783.6	50.0%	1	K.ALTLQDLDNIWAAQAGKHEAIVK.N	2 2
7	step03.15396.15396.1	2.0486	0.1443	756.736	756.9565	3	335.2	80.0%	2	K.LLELIR.R	1 1 1 1 1 1 1 1 1
7	step03.15391.15391.2	2.2222	0.1225	757.284	756.9565	1	366.8	90.0%	1	K.LLELIR.R	2 2 2 2 2 2 2 2 2
	step05.15653.15653.2	3.2129	0.3149	1285.668	1285.5166	1	952.1	75.0%	4	R.TNDKWVIPALK.Q	2 2
	step06.19463.19463.2	2.512	0.1836	1889.963	1889.2234	1	1028.1	60.0%	1	R.FLLKDGQLWLCAPQAK.Q	2 2
	step05.18527.18527.2	5.1193	0.5111	1717.782	1717.0026	1	1878.8	78.6%	4	R.AIDLLKEIYTNLGPR.L	2 2
	step05.14390.14390.2	2.3805	0.1549	898.998	899.1129	1	400.3	92.9%	1	K.LIGQLNLK.D	2 2
	step05.14198.14198.2	2.7229	0.2469	1142.073	1142.3737	1	713.1	83.3%	2	K.LIGQLNLKDK.S	2 2
*	step03.18219.18219.2	2.6335	0.1156	1600.225	1599.9473	106	291.7	50.0%	1	R.DGARVLMKLMPPDR.T	2
	step06.19426.19426.2	3.9134	0.5559	1313.415	1313.5732	1	1198.1	81.8%	2	K.LLLTAIGYGHVR.A	2 2
	step02.13203.13203.1	2.4129	0.3206	1165.424	1166.3058	1	332.1	72.2%	1	K.ELLAFQTSEK.K	1 1
	step02.13168.13168.2	2.3084	0.2543	1166.417	1166.3058	2	503.6	61.1%	2	K.ELLAFQTSEK.K	2 2
	step05.17355.17356.2	5.0373	0.5086	2547.158	2547.9297	1	1053.9	52.4%	2	K.NAGATCYM*NSVIQQLYMIPSIR.N	2 2
	step05.18500.18500.3	4.2665	0.3961	2548.747	2547.9297	1	1666.6	44.0%	2	K.NAGATCYMNSVIQQLYM*IPSIR.N	3 3
	step05.18405.18405.2	5.0921	0.4765	2548.769	2547.9297	1	1121.1	50.0%	3	K.NAGATCYMNSVIQQLYM*IPSIR.N	2 2
	step02.12558.12558.1	1.8485	0.1687	963.634	964.10034	1	168.5	71.4%	1	K.EYNIGVLR.H	1 1
	step02.12578.12578.2	2.3311	0.2173	964.312	964.10034	1	668.1	85.7%	1	K.EYNIGVLR.H	2 2
	step04.932.932.2	5.8019	0.5408	2421.253	2421.6013	1	2113.7	62.5%	11	R.EQHDALEFFNSLVDSLDEALK.A	2 2
	step04.928.928.3	5.3337	0.4282	2422.881	2421.6013	1	2011.7	42.5%	5	R.EQHDALEFFNSLVDSLDEALK.A	3 3
	step02.8316.8316.2	3.2034	0.4827	1022.277	1022.13666	1	715.5	88.9%	2	K.VLGGSFADQK.I	2 2
	step03.11155.11155.2	3.5842	0.4493	1577.458	1577.6709	1	1342.2	73.1%	2	K.GDLLEGANAYHCEK.C	2 2
	step02.16532.16532.2	3.2136	0.4514	1235.346	1235.3284	1	1443.2	93.8%	2	K.FNDYFEFPR.E	2 2
	step02.18261.18261.3	6.4968	0.6087	3176.063	3175.5112	1	2370.7	37.0%	1	K.MDDDEEMKNQCFGGEYMGEVFDHMMK.R	3 3
*	step03.11013.11013.2	2.589	0.1317	1854.35	1853.9257	102	111.0	27.1%	1	R.LQY#S#LEYFQFVKK.L	2
	step06.19446.19446.2	3.0767	0.3725	1200.349	1199.3823	1	632.3	83.3%	2	R.FLFTTGFHTK.K	2 2
	step02.14942.14942.2	4.551	0.431	1701.38	1700.8639	1	1953.2	80.8%	2	R.FSEYLLECPSAEVR.G	2 2
	step04.16692.16692.1	2.056	0.2599	1177.782	1178.406	1	124.0	55.6%	1	K.LYSVVSQLIR.C	1 1
	step04.16675.16675.2	3.6462	0.2733	1178.686	1178.406	1	1468.4	94.4%	3	K.LYSVVSQLIR.C	2 2
	step02.14922.14922.2	2.5009	0.1645	1719.771	1718.8491	29	329.9	46.4%	1	K.GIPDDRDGLFDTIQR.S	2 2
	step02.13205.13205.2	3.1098	0.2777	1065.403	1065.1615	1	912.0	87.5%	2	R.DGLFDTIQR.S	2 2
	step05.19272.19272.2	3.605	0.3037	1917.856	1919.1283	1	1540.1	75.0%	1	R.KWTWAVEWLGDELER.R	2 2
	step05.19607.19608.2	5.3831	0.4741	1791.09	1790.9553	1	1904.8	84.6%	3	K.WTWAVEWLGDELER.R	2 2

gi|15721937|ref|NP_11

15.0%

167

19015

9.4

28S ribosomal protein S24, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14368.14368.1	1.8812	0.3976	978.649	979.11176	1	394.5	78.6%	1	R.TVEDVFLR.K	1
*	step02.14361.14361.2	2.484	0.3523	979.502	979.11176	1	592.5	92.9%	1	R.TVEDVFLR.K	2
*	step05.19288.19288.2	4.6475	0.487	1984.677	1984.3434	1	865.8	75.0%	2	K.FMWGTFPGCLADQLVLK.R	2

U	gi\|14165435\|ref\|NP_11	6	11	14.9%	463	50976	5.5	heterogeneous nuclear ribonucleoprotein K isoform b [Homo sapiens]
U	gi\|14165439\|ref\|NP_00	6	11	14.9%	464	51028	5.3	heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
U	gi\|14165437\|ref\|NP_11	6	11	14.9%	464	51028	5.3	heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.19899.19899.2	3.7462	0.492	1844.608	1844.1825	1	607.7	46.9%	4	R.ILSISADIETIGEILKK.I	2
step05.13048.13048.1	2.389	0.2229	1054.496	1054.2682	1	372.5	66.7%	1	R.VVLIGGKPDR.V	1
step05.13026.13026.2	2.8418	0.3374	1054.628	1054.2682	1	1137.4	88.9%	2	R.VVLIGGKPDR.V	2
step02.15412.15412.2	2.6276	0.1579	1917.772	1918.18	5	294.7	44.4%	1	R.GSYGDLGGPIITTQVTIPK.D	2
step03.16221.16221.2	3.329	0.3888	2590.081	2590.914	1	1033.7	50.0%	2	R.IITITGTQDQIQNAQYLLQNSVK.Q	2
step03.16207.16207.3	5.4403	0.4678	2590.97	2590.914	1	1343.4	37.5%	1	R.IITITGTQDQIQNAQYLLQNSVK.Q	3

gi|7669492|ref|NP_002

14.9%

335

36053

8.5

glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.17005.17005.2	3.7038	0.3293	1614.751	1614.8702	1	1563.7	80.8%	2	K.LVINGNPITIFQER.D	2
*	step05.16481.16481.2	4.5952	0.5119	2214.607	2214.5938	1	1133.5	65.0%	2	R.VIISAPSADAPMFVMGVNHEK.Y	2
*	step04.14568.14568.2	3.4811	0.3266	1412.491	1412.6168	2	517.1	60.7%	1	R.GALQNIIPASTGAAK.A	2

gi|4505303|ref|NP_002

14.9%

208

22764

5.7

myosin light chain 6B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.10863.10863.2	2.4061	0.1779	1355.573	1355.5221	1	765.9	66.7%	1	R.ALGQNPTNAEVLK.V	2 2
*	step06.19264.19264.2	3.1283	0.1243	2125.778	2125.48	3	409.2	44.1%	1	K.SRRVDFETFLPM*LQAVAK.N	2

Similarities: gi|17986258|ref|NP_06(1:1)

gi|29826282|ref|NP_81

14.8%

546

59272

4.4

protein phosphatase 1G [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19943.19943.2	2.3264	0.1563	1624.412	1623.9023	1	715.0	65.4%	1	R.LPLPYGFSAMQGWR.V	2
*	step03.14302.14302.2	2.9008	0.1252	1233.718	1233.4385	1	830.1	83.3%	1	K.YLPDIIKDQK.A	2
*	step02.16713.16713.2	3.4703	0.3544	1277.605	1277.4481	1	1682.4	81.8%	2	K.ALEDAFLAIDAK.L	2
*	step02.19868.19868.3	6.241	0.45	3274.344	3273.4824	1	2033.8	34.8%	1	K.VADEDDVDNEEAALLHEEATMTIEELLTR.Y	3
*	step02.19677.19677.3	6.5418	0.5032	3288.837	3289.482	1	2247.2	40.2%	2	K.VADEDDVDNEEAALLHEEATM*TIEELLTR.Y	3
*	step02.16881.16881.2	3.2412	0.3884	1796.792	1796.0784	1	584.3	80.0%	2	K.NLPPEEQMISALPDIK.V	2
*	step02.13884.13884.2	3.1309	0.3295	1811.71	1812.0778	1	300.0	63.3%	1	K.NLPPEEQM*ISALPDIK.V	2

gi|7661952|ref|NP_055

14.7%

963

109935

5.6

squamous cell carcinoma antigen recognized by T-cells 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8758.8758.2	3.3377	0.291	1222.406	1222.3295	1	1013.2	85.0%	1	R.EFESAIVEAAR.L	2
*	step03.16574.16574.2	2.3604	0.1817	2539.7	2538.8032	1	660.7	40.0%	1	R.AVQCTSDYPEHVCEVLLTMER.T	2
*	step02.14631.14631.2	3.4316	0.24	1591.137	1591.7008	1	1471.4	73.1%	1	R.TEGSLEDWDIAVQK.T	2
*	step06.13841.13841.3	4.0452	0.2835	2522.52	2522.76	1	1395.2	35.4%	1	R.RRVENSIPAAGETQNVEVAAGPAGK.C	3
*	step05.17010.17010.2	3.8205	0.3852	1370.621	1370.6117	1	1073.2	81.8%	2	K.LFISGLPFSCTK.E	2
*	step02.13280.13280.2	3.0308	0.1984	2117.64	2118.31	1	197.7	47.2%	1	K.GLAYVEYENESQASQAVMK.M	2
*	step04.15033.15033.2	2.6589	0.3286	928.446	928.11115	1	689.2	85.7%	2	R.TQLSLLPR.A	2
*	step06.14536.14536.3	4.9947	0.3687	2967.453	2967.2861	1	1401.8	33.1%	3	R.ALQRPSAAAPQAENGPAAAPAVAAPAATEAPK.M	3

gi|10047140|ref|NP_06

14.7%

252

27924

9.7

RNA-binding protein PNO1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.9956.9956.2	2.3049	0.1137	1450.473	1449.6167	8	534.0	48.5%	1	K.IPVPANRY#TPLK.E	2
*	step06.18776.18776.2	2.2674	0.3983	1256.221	1256.4785	1	1640.6	85.0%	1	K.VHILGSFQNIK.M	2
*	step05.15524.15524.2	3.512	0.365	1498.667	1498.743	1	1052.5	65.4%	2	R.TAICNLILGNPPSK.V	2

gi|119395754|ref|NP_0

14.6%

590

62378

7.8

keratin, type II cytoskeletal 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.11774.11774.2	3.3461	0.3832	1732.877	1731.808	1	303.8	47.2%	1	R.TSFTSVSRSGGGGGGGFGR.V	2 2
	step04.12535.12535.2	4.2727	0.5219	1411.266	1411.5392	1	2321.3	82.1%	1	R.VSLAGACGVGGYGSR.S	2 2
*	step03.12451.12451.2	2.564	0.3145	1112.459	1112.2181	1	1005.7	85.0%	1	R.ISISTSGGSFR.N	2
	step02.18066.18066.1	2.2392	0.09	1329.837	1330.5093	1	555.3	72.7%	1	R.NLDLDSIIAEVK.A	1 1 1 1 1 1 1 1
	step02.17526.17526.2	2.2275	0.0943	1619.662	1618.774	89	143.3	33.3%	1	R.LLREY#QELMNTK.L	2 2
	step04.13456.13456.2	3.5517	0.4354	1440.63	1440.5408	1	1164.5	71.9%	1	R.GLGVGFGSGGGSSSSVK.F	2 2

gi|14269586|ref|NP_11

14.6%

205

24212

10.4

28S ribosomal protein S26, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19328.19328.2	4.0384	0.4429	2063.974	2063.429	1	778.0	70.6%	2	R.VNMPPAVDPAEFFVLMER.Y	2
*	step03.18553.18553.2	4.1953	0.475	2078.638	2079.4285	1	1282.1	73.5%	2	R.VNM*PPAVDPAEFFVLMER.Y	2
*	step03.16890.16890.2	4.2649	0.5553	2094.728	2095.4277	1	964.8	67.6%	4	R.VNMPPAVDPAEFFVLMER.Y	2
*	step03.16911.16911.3	4.6434	0.5213	2095.456	2095.4277	1	2017.2	45.6%	2	R.VNMPPAVDPAEFFVLMER.Y	3
*	step04.7468.7468.2	4.1851	0.1508	1500.583	1500.6792	1	557.3	81.8%	4	K.EREVLQLQEEVK.N	2

gi|255918171|ref|NP_0

14.5%

372

41804

4.9

tubulin beta-8 chain isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step06.19010.19010.3	6.7555	0.5846	3442.667	3441.7993	1	3270.6	35.9%	4	R.KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
2	step03.16218.16218.3	7.1499	0.5735	3314.09	3313.6262	1	2606.3	34.7%	5	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
	step03.13345.13345.2	2.7217	0.3898	1130.843	1131.2664	1	1043.8	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2 2
	step06.16523.16523.2	2.4043	0.2616	1259.535	1259.4392	1	704.5	75.0%	2	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2 2
	step06.18553.18553.1	1.9652	0.2714	1143.867	1144.4148	22	248.2	61.1%	1	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1 1
	step05.15742.15742.2	3.6737	0.49	1144.031	1144.4148	1	998.4	94.4%	4	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
	step06.17302.17302.2	3.5975	0.3477	1160.506	1160.4142	1	998.9	88.9%	2	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2

gi|50593002|ref|NP_00

14.5%

255

28416

8.6

U2 small nuclear ribonucleoprotein A' [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16912.16912.2	3.3619	0.461	1891.948	1892.1027	1	1087.9	56.2%	1	K.LTAELIEQAAQYTNAVR.D	2
*	step06.19156.19156.2	2.9465	0.2779	1059.464	1059.2864	1	894.2	87.5%	2	R.KLDGFPLLR.R	2
	step05.13198.13198.2	3.2683	0.2713	1126.429	1126.2913	3	802.8	70.0%	1	K.GLLQSGQIPGR.E	2

U	gi\|11056056\|ref\|NP_06	2	3	14.5%	138	15173	10.3	28S ribosomal protein S12, mitochondrial precursor [Homo sapiens]
U	gi\|16950591\|ref\|NP_20	2	3	14.5%	138	15173	10.3	28S ribosomal protein S12, mitochondrial precursor [Homo sapiens]
U	gi\|16950589\|ref\|NP_20	2	3	14.5%	138	15173	10.3	28S ribosomal protein S12, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.15392.15392.2	2.2584	0.3526	1195.664	1196.3815	1	514.2	65.0%	1	K.LGPTEGRPQLK.G	2
	step04.14586.14586.2	2.5621	0.1016	1053.181	1053.2305	1	699.6	75.0%	2	K.GVVLCTFTR.K	2

gi|53759103|ref|NP_00

1037

119938

5.2

importin-8 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19255.19255.1	2.1184	0.2082	1143.767	1144.3914	1	221.0	61.1%	2	K.IINFAPSLLR.I	1
*	step06.19240.19240.2	3.1339	0.2852	1144.553	1144.3914	1	1348.8	94.4%	2	K.IINFAPSLLR.I	2
*	step04.17224.17224.3	4.3029	0.323	3387.663	3387.685	1	682.2	27.8%	1	K.NM*VTQYWPDREPPPGEAIFPFNIHENDR.Q	3
*	step04.12314.12314.2	2.4964	0.2596	1037.106	1037.2528	1	619.2	92.9%	1	R.VQLTM*CLR.A	2
	step04.16225.16225.2	3.2529	0.5163	1333.624	1333.6012	1	1584.7	86.4%	1	K.TYAVGIQQVLLK.I	2 2
	step03.18121.18121.3	3.8568	0.4183	2799.039	2798.1597	29	254.6	26.0%	1	R.MKFDIFEDYASPTTAAQTLLYTAAK.K	3 3
	step02.19048.19048.2	4.9946	0.4013	2539.804	2538.7898	1	680.9	45.5%	1	K.FDIFEDYASPTTAAQTLLYTAAK.K	2 2
	step02.18107.18107.2	3.5199	0.4534	2121.146	2120.431	1	725.6	46.9%	2	K.MMAFCYQILTDPNFDPR.K	2 2
	step06.41.41.2	2.8501	0.4039	1649.633	1649.956	1	1133.4	66.7%	1	K.DGALHVIGSLAEILLK.K	2 2
	step03.20392.20392.2	4.6037	0.4099	1901.793	1901.2324	1	878.1	70.0%	3	R.GIDQCIPLFVQLVLER.L	2 2
	step03.20419.20419.3	3.7626	0.3353	1901.847	1901.2324	1	1687.8	51.7%	1	R.GIDQCIPLFVQLVLER.L	3 3
	step02.19342.19342.2	4.4676	0.4887	2008.755	2008.2437	1	1660.0	71.9%	4	R.DAAWYQLLMAPLSEDQR.T	2 2

Similarities: gi|300360505|ref|NP_0(8:4)

U	gi\|27886555\|ref\|NP_77	8	10	14.4%	1065	115050	6.4	nuclear factor of activated T-cells, cytoplasmic 3 isoform 3 [Homo sapiens]
U	gi\|4758804\|ref\|NP_004	8	10	14.3%	1068	115237	6.4	nuclear factor of activated T-cells, cytoplasmic 3 isoform 2 [Homo sapiens]
U	gi\|27886561\|ref\|NP_77	8	10	14.2%	1075	115594	6.4	nuclear factor of activated T-cells, cytoplasmic 3 isoform 1 [Homo sapiens]
U	gi\|27886559\|ref\|NP_77	8	10	14.6%	1045	112642	6.5	nuclear factor of activated T-cells, cytoplasmic 3 isoform 4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.18596.18596.3	6.153	0.5533	3262.902	3263.3347	1	1375.3	32.1%	2	R.SWFSDASSCESLSHIYDDVDSELNEAAAR.F	3
step02.12056.12056.2	2.6089	0.3004	1751.781	1751.9158	22	141.5	43.3%	1	R.ETSIDDGLGSQYPLKK.D	2
step02.17774.17774.2	3.0981	0.2678	2058.755	2059.214	1	731.4	55.9%	1	K.DSCGDQFLSVPSPFTWSK.P	2
step06.19874.19874.2	3.365	0.3761	2394.938	2394.7036	1	240.0	35.0%	2	R.TSSLPPLDWPLPAHFGQCELK.I	2
step03.16612.16612.2	2.8021	0.1767	2426.084	2425.746	1	220.1	37.5%	1	K.LLGYNEKPINLQM*FIGTADDR.Y	2
step03.17577.17577.2	3.0961	0.3309	2498.898	2498.915	1	758.7	52.3%	1	K.VLEIPLLPENNMSASIDCAGILK.L	2
step04.16065.16065.2	2.2777	0.1989	1800.699	1801.0713	1	369.3	46.7%	1	K.VLSLQIASIPVECSQR.S	2
step04.14058.14058.2	2.6205	0.2777	1116.404	1116.355	1	609.5	81.2%	1	R.FTYTPVLM*K.Q	2

gi|52632383|ref|NP_00

589

64133

8.2

heterogeneous nuclear ribonucleoprotein L isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.1953.1953.3	5.8389	0.4831	3088.97	3089.5913	1	1892.5	34.8%	4	R.GLIDGVVEADLVEALQEFGPISYVVVMPK.K	3
*	step04.1167.1167.3	3.6912	0.3242	3104.419	3105.5908	1	577.2	27.7%	1	R.GLIDGVVEADLVEALQEFGPISYVVVM*PK.K	3
	step04.17642.17642.2	4.6588	0.4829	1589.661	1589.8096	1	2052.4	87.5%	4	R.VFNVFCLYGNVEK.V	2 2
	step03.14494.14494.2	2.8249	0.4029	1870.383	1869.1129	1	1017.4	55.9%	1	K.SKPGAAMVEMADGYAVDR.A	2 2
	step03.8162.8162.2	2.373	0.2488	1884.834	1885.1123	2	210.9	44.1%	1	K.SKPGAAMVEM*ADGYAVDR.A	2 2
	step06.18751.18751.2	3.9637	0.4551	1635.514	1635.8716	1	1236.6	76.9%	2	R.AITHLNNNFMFGQK.L	2 2
	step02.14055.14055.2	2.8043	0.4031	1223.521	1223.3142	1	1180.9	75.0%	2	R.SSSGLLEWESK.S	2 2

Similarities: gi|52632385|ref|NP_00(5:2)

gi|56237027|ref|NP_00

577

63481

9.2

insulin-like growth factor 2 mRNA-binding protein 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15264.15264.2	4.1552	0.2412	1876.815	1877.0848	1	2085.1	75.0%	1	K.LYIGNLNESVTPADLEK.V	2 2
*	step05.17176.17176.2	3.773	0.4147	1473.553	1472.7969	1	722.5	80.8%	1	R.LLVPTQYVGAIIGK.E	2
	step02.17481.17481.2	3.0331	0.2106	1864.523	1864.0892	1	794.6	60.0%	1	K.ITISSLQDLTLYNPER.T	2 2
	step04.15348.15348.2	4.1019	0.4981	1432.453	1431.7251	1	944.8	70.8%	2	R.MVIITGPPEAQFK.A	2 2 2 2
	step04.14214.14214.2	3.6978	0.1416	1448.453	1447.7245	1	1370.1	75.0%	2	R.M*VIITGPPEAQFK.A	2 2 2 2
	step04.15058.15058.2	2.5297	0.2325	1209.417	1209.3755	1	657.6	77.8%	1	K.LKEENFFGPK.E	2 2
	step06.18049.18049.2	2.6531	0.2786	1523.564	1522.7565	1	443.4	66.7%	2	K.IIGHFYASQMAQR.K	2 2
	step06.17316.17316.2	2.3216	0.2116	1538.784	1538.7559	1	963.0	70.8%	1	K.IIGHFYASQM*AQR.K	2 2

Similarities: gi|238624257|ref|NP_0(7:1)
gi|56118219|ref|NP_00(2:6)
gi|30795212|ref|NP_00(2:6)

gi|5803036|ref|NP_006

305

30841

9.3

heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15861.15861.2	2.8242	0.3765	1691.635	1691.9099	1	867.3	56.7%	1	K.LFIGGLNVQTSESGLR.G	2
*	step04.16539.16539.2	3.3102	0.4278	2321.673	2320.5798	1	778.2	45.0%	1	R.GHFEAFGTLTDCVVVVNPQTK.R	2
*3	step04.14000.14000.1	1.8094	0.1221	733.649	733.9214	2	519.6	75.0%	1	K.LFVGGLK.G	1 1 1 1 1

Similarities: gi|14043072|ref|NP_11(1:2)
gi|58761496|ref|NP_00(1:2)
gi|14043070|ref|NP_11(1:2)
gi|34740329|ref|NP_91(1:2)

U	gi\|31542947\|ref\|NP_00	9	15	14.3%	573	61055	5.9	60 kDa heat shock protein, mitochondrial [Homo sapiens]
U	gi\|41399285\|ref\|NP_95	9	15	14.3%	573	61055	5.9	60 kDa heat shock protein, mitochondrial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.724.724.2	4.7269	0.5142	2114.394	2114.5588	1	1611.6	57.5%	1	R.ALMLQGVDLLADAVAVTMGPK.G	2
step04.717.717.3	5.0044	0.5633	2114.537	2114.5588	1	1903.7	43.8%	2	R.ALMLQGVDLLADAVAVTMGPK.G	3
step03.19354.19354.2	3.7348	0.504	2130.101	2130.5583	1	855.3	47.5%	1	R.ALMLQGVDLLADAVAVTM*GPK.G	2
step04.19660.19660.2	3.9649	0.4328	1556.631	1557.9236	1	2314.6	78.6%	2	R.GVMLAVDAVIAELKK.Q	2
step06.19462.19462.2	4.0389	0.5291	1919.791	1920.2024	1	614.9	55.9%	2	K.ISSIQSIVPALEIANAHR.K	2
step04.13941.13941.1	1.9174	0.1963	912.719	913.1396	2	620.6	75.0%	2	K.VGLQVVAVK.A	1
step04.13916.13916.2	3.5446	0.3083	912.909	913.1396	1	1515.0	93.8%	2	K.VGLQVVAVK.A	2
step02.16402.16402.2	3.4142	0.2882	2040.051	2039.2261	1	496.6	40.6%	2	R.IQEIIEQLDVTTSEYEK.E	2
step02.16907.16907.2	4.93	0.4353	2296.381	2296.5134	1	1330.2	63.9%	1	R.IQEIIEQLDVTTSEYEKEK.L	2

gi|7661532|ref|NP_054

14.3%

412

46675

7.2

RNA-binding protein NOB1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18546.18546.2	3.3388	0.3127	2331.323	2332.5295	1	770.0	47.2%	1	K.GHSACEPENLEFSSFMFWR.N	2
*	step06.18050.18050.2	4.0715	0.3441	2098.836	2099.3376	1	578.8	53.1%	2	K.YAINPHLTEDQRFPQLR.L	2
*	step02.17759.17759.2	4.3828	0.436	2499.76	2499.7168	1	842.7	54.5%	2	K.TNVFAPDYIAGVSPFVENDISSR.S	2

gi|4506717|ref|NP_001

14.3%

6677

10.1

40S ribosomal protein S29 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16138.16138.1	2.2331	0.3848	920.688	921.0722	1	444.7	71.4%	2	K.DIGFIKLD.-	1
*	step02.16137.16137.2	3.0886	0.5135	921.418	921.0722	1	692.7	92.9%	2	K.DIGFIKLD.-	2

gi|237820620|ref|NP_1

14.1%

446

49419

4.9

glutamate-rich WD repeat-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17240.17240.2	4.1756	0.4488	1772.934	1773.9663	1	2060.1	80.0%	1	R.VSWLGEEPVAGVWSEK.G	2
*	step03.18062.18062.2	5.6581	0.4659	1799.101	1798.1188	1	2299.0	80.0%	1	R.LLQVVEEPQALAAFLR.D	2
*	step02.18190.18190.3	5.5223	0.4996	3333.388	3333.6042	1	1121.5	34.2%	2	R.DPEAGDVEADPGLADLPQQLLFVHQGETELK.E	3

gi|4504511|ref|NP_001

14.1%

397

44868

7.1

dnaJ homolog subfamily A member 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.422.422.2	5.8445	0.614	2324.859	2324.5374	1	980.3	47.8%	3	K.EGGAGGGFGSPMDIFDMFFGGGGR.M	2
*	step02.20144.20144.2	4.5088	0.1098	2339.698	2340.5369	1	542.9	37.0%	2	K.EGGAGGGFGSPM*DIFDMFFGGGGR.M	2
*	step02.19335.19335.2	5.2916	0.5454	2356.788	2356.5364	1	879.7	45.7%	2	K.EGGAGGGFGSPMDIFDMFFGGGGR.M	2
*	step06.17104.17104.2	3.3527	0.3682	1393.714	1393.6566	1	1013.3	70.8%	2	R.TIVITSHPGQIVK.H	2
*	step03.16922.16922.2	5.2695	0.4694	2149.06	2148.4438	1	1252.7	63.9%	1	K.VNFPENGFLSPDKLSLLEK.L	2

gi|7019327|ref|NP_037

14.0%

822

93828

5.2

anaphase-promoting complex subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12776.12776.2	2.4048	0.1009	833.17	831.977	3	442.5	91.7%	1	R.SLELLEK.W	2
*	step05.16496.16496.2	3.1789	0.396	1024.224	1024.1974	1	1411.0	87.5%	2	R.GVLFFSTPR.T	2
*	step04.14658.14658.2	4.2519	0.3799	1613.604	1613.7976	1	991.1	64.3%	2	R.VSAEAVTTTLHQVTR.E	2
	step02.17231.17231.2	3.4662	0.3498	1107.57	1106.2966	1	1142.2	93.8%	2	R.IEELFSIVR.D	2 2
	step03.19615.19615.2	4.8307	0.5486	1583.545	1582.8202	1	2185.5	82.1%	6	R.SSDIISLLVSIYGSK.D	2 2
	step06.18475.18475.2	3.0926	0.4894	1361.859	1361.53	1	1028.1	85.0%	2	R.LLHQFSFSPER.E	2 2
	step04.16572.16572.2	4.3259	0.4801	1696.421	1697.0085	1	1181.5	76.9%	2	R.FGEAPMHFCEVMLK.D	2 2
	step04.15646.15646.2	3.9451	0.4991	1713.721	1713.0079	1	486.3	69.2%	2	R.FGEAPM*HFCEVMLK.D	2 2
	step04.14871.14871.2	2.6122	0.3116	1728.188	1729.0073	1	321.1	61.5%	1	R.FGEAPMHFCEVMLK.D	2 2
*	step03.19458.19458.2	6.7668	0.5916	2565.192	2564.9817	1	2607.6	61.4%	3	R.MFVVTGPALAEIDLQELQGYLQK.K	2
*	step03.19440.19440.3	5.9275	0.4938	2565.66	2564.9817	1	2143.4	40.9%	2	R.MFVVTGPALAEIDLQELQGYLQK.K	3
*	step03.18746.18746.2	7.0008	0.6327	2581.205	2580.981	1	3403.8	68.2%	2	R.M*FVVTGPALAEIDLQELQGYLQK.K	2
*	step03.18741.18741.3	5.5853	0.5397	2581.459	2580.981	1	2829.6	45.5%	2	R.M*FVVTGPALAEIDLQELQGYLQK.K	3
*	step02.9528.9528.2	4.0748	0.4315	1400.085	1399.5334	1	1670.9	86.4%	6	R.DQQLVYSAGVYR.L	2

Similarities: gi|310129666|ref|XP_9(6:8)

gi|24430192|ref|NP_00

14.0%

473

51268

5.0

keratin, type I cytoskeletal 16 [Homo sapiens] keratin 16; keratin, type I cytoskeletal 16; cytokeratin 16 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.11329.11329.2	3.4144	0.5693	1340.617	1339.4364	1	1099.5	73.1%	4	R.APSTYGGGLSVSSR.F	2
step04.14545.14545.2	2.3952	0.1011	1064.806	1065.2478	1	1066.5	87.5%	1	R.LASYLDKVR.A	2 2 2 2 2
step02.13582.13582.2	2.9821	0.4259	1030.23	1030.2002	1	1047.2	93.8%	4	R.VLDELTLAR.T	2 2 2 2
step04.504.504.2	3.661	0.5364	2665.304	2666.041	1	638.1	43.2%	4	R.YCMQLSQIQGLIGSVEEQLAQLR.C	2
step04.502.502.3	5.1988	0.4512	2665.894	2666.041	1	1953.8	44.3%	4	R.YCMQLSQIQGLIGSVEEQLAQLR.C	3
step03.13960.13960.2	3.1251	0.3723	1380.598	1380.5316	1	884.8	80.0%	2	K.TRLEQEIATYR.R	2 2 2 2 2 2

gi|14165270|ref|NP_05

14.0%

178

20692

9.1

39S ribosomal protein L13, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14152.14152.2	2.7978	0.37	1176.473	1176.3088	1	611.6	66.7%	1	R.APQQWATFAR.I	2
*	step03.17554.17554.2	2.723	0.4371	1842.795	1843.1116	1	764.5	60.7%	2	R.LHLFPDEYIPEDILK.N	2

gi|4506457|ref|NP_002

13.9%

317

36876

4.4

reticulocalbin-2 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15670.15670.2	3.8161	0.2053	1707.665	1707.8597	1	2036.3	85.7%	2	R.EALLGVQEDVDEYVK.L	2
*5	step04.12412.12412.1	1.8908	0.1788	685.68	685.87823	1	568.1	80.0%	1	R.LQAIIK.K	1 1 1
*	step02.18167.18167.2	4.516	0.4835	2642.034	2642.81	1	1841.8	61.4%	1	K.LSEEEILENPDLFLTSEATDYGR.Q	2

Similarities: gi|114326455|ref|NP_0(1:2)
gi|153792694|ref|NP_0(1:2)

gi|7706322|ref|NP_057

13.9%

244

28068

6.7

homeobox prox 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19418.19418.2	2.649	0.2909	1514.416	1514.8188	1	902.9	65.4%	2	K.AGVM*ALANLLQIQR.H	2
*	step03.18687.18687.2	5.322	0.5306	2154.003	2154.4116	1	3147.5	76.3%	2	K.HILGFDTGDAVLNEAAQILR.L	2

U	gi\|11136628\|ref\|NP_06	3	5	13.8%	225	24764	4.7	elongation factor 1-beta [Homo sapiens]
U	gi\|83376130\|ref\|NP_00	3	5	13.8%	225	24764	4.7	elongation factor 1-beta [Homo sapiens]
U	gi\|4503477\|ref\|NP_001	3	5	13.8%	225	24764	4.7	elongation factor 1-beta [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17074.17074.2	4.1843	0.4526	2065.082	2064.3022	1	685.7	52.9%	1	K.SSILLDVKPWDDETDMAK.L	2
step02.16683.16683.2	3.4084	0.4847	2080.455	2080.3018	1	318.8	44.1%	2	K.SSILLDVKPWDDETDM*AK.L	2
step02.13836.13836.2	3.7598	0.5293	1348.581	1348.4865	1	2043.3	87.5%	2	R.SIQADGLVWGSSK.L	2

U	gi\|300244569\|ref\|NP_0	4	7	13.7%	483	53414	10.5	serine/arginine-rich splicing factor 11 isoform 2 [Homo sapiens]
U	gi\|4759100\|ref\|NP_004	4	7	13.6%	484	53542	10.5	serine/arginine-rich splicing factor 11 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.13617.13617.2	2.2123	0.1814	1528.785	1527.7031	1	259.5	65.4%	1	R.LFPPDDSPLPVSSR.V	2
step04.16257.16257.2	4.6955	0.4765	2368.872	2369.5776	1	1938.5	72.5%	2	K.FHDPDSAVVAQHLTNTVFVDR.A	2
step02.17006.17006.2	3.4349	0.4865	1784.185	1785.0736	1	1089.4	68.8%	2	R.ALIVVPYAEGVIPDEAK.A	2
step06.17764.17764.2	3.9884	0.375	1407.471	1406.6554	1	1429.4	80.8%	2	K.LNHVAAGLVSPSLK.S	2

gi|51093851|ref|NP_06

13.7%

453

52043

6.4

serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.16209.16209.2	3.7279	0.5167	2453.801	2454.5881	1	1391.9	57.9%	2	R.GEYNVYSTFQSHEPEFDYLK.S	2 2 2
*	step06.19124.19124.2	3.8656	0.5061	1983.818	1984.2035	1	522.1	65.6%	1	R.WLPQQNAAHFLLSTNDK.T	2
	step05.17146.17146.2	3.4648	0.4541	1409.927	1410.6025	1	1505.0	85.0%	2	R.INLWHLEITDR.S	2 2
	step03.117.117.2	4.6826	0.5106	1560.604	1559.742	1	2774.5	88.5%	5	R.SFFSEIISSISDVK.F	2 2 2

Similarities: gi|294832006|ref|NP_0(3:1)
gi|188497696|ref|NP_0(2:2)

gi|17158044|ref|NP_00

13.7%

249

28681

10.8

40S ribosomal protein S6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17866.17866.2	3.6676	0.2642	1611.494	1611.8816	1	905.9	76.9%	2	-.M*KLNISFPATGCQK.L	2
*	step04.14632.14632.1	2.0403	0.2415	1336.747	1336.5122	5	258.9	45.5%	1	K.LNISFPATGCQK.L	1
*	step02.15074.15074.2	4.6303	0.4856	1621.546	1621.7936	1	2257.9	82.1%	2	R.MATEVAADALGEEWK.G	2
*	step02.13701.13701.2	4.4947	0.4696	1637.563	1637.793	1	2886.0	89.3%	2	R.M*ATEVAADALGEEWK.G	2
*	step03.15844.15844.2	4.5313	0.5969	2212.707	2212.4683	1	506.5	60.5%	1	R.M*ATEVAADALGEEWKGYVVR.I	2

gi|21040371|ref|NP_00

13.6%

427

49130

5.7

ATP-dependent RNA helicase DDX39 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14019.14019.2	2.3336	0.4003	1297.702	1297.4012	1	846.5	77.3%	1	K.GSYVSIHSSGFR.D	2 2
step04.16902.16902.2	2.3649	0.17	1245.106	1244.5077	2	843.1	77.8%	2	R.DFLLKPELLR.A	2 2
step06.18775.18775.2	3.0997	0.3892	1463.318	1463.7054	1	665.3	72.7%	2	K.LTLHGLQQYYVK.L	2 2
step05.16350.16350.1	2.0108	0.2044	1103.721	1104.3271	1	251.9	66.7%	1	R.ILVATNLFGR.G	1 1
step05.16310.16310.2	3.3741	0.4672	1104.363	1104.3271	1	1216.3	94.4%	2	R.ILVATNLFGR.G	2 2
step02.14596.14596.2	4.0171	0.3868	1480.517	1480.6017	1	1817.0	76.9%	2	K.GLAITFVSDENDAK.I	2 2

Similarities: gi|18375623|ref|NP_54(6:0)

gi|68303572|ref|NP_00

13.6%

337

38915

9.6

casein kinase I isoform alpha isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13854.13854.2	2.3764	0.4533	1411.873	1410.686	1	1513.9	81.8%	1	K.TVLMLADQMISR.I	2 2 2
step04.16543.16543.2	3.1142	0.4853	1476.044	1476.726	1	821.3	87.5%	2	R.DIKPDNFLMGIGR.H	2 2
step04.18726.18726.2	3.2396	0.3505	1137.564	1137.3955	2	878.2	88.9%	2	K.LFLIDFGLAK.K	2 2
step02.14798.14798.2	2.2682	0.3081	1435.582	1434.598	4	211.6	65.0%	1	R.FEEAPDYMYLR.Q	2 2

Similarities: gi|68303575|ref|NP_00(3:1)
gi|269846834|ref|NP_6(2:2)

U	gi\|55956919\|ref\|NP_11	4	7	13.6%	332	35968	6.9	heterogeneous nuclear ribonucleoprotein A/B isoform a [Homo sapiens]
U	gi\|55956921\|ref\|NP_00	4	7	15.8%	285	30588	7.9	heterogeneous nuclear ribonucleoprotein A/B isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15850.15850.2	3.1483	0.4048	1457.031	1456.6915	1	1364.5	79.2%	2	K.MFVGGLSWDTSKK.D	2
2	step02.8010.8010.2	3.4091	0.431	1169.094	1168.3151	1	1138.0	88.9%	1	K.FGEVVDCTIK.M	2 2 2
	step05.18509.18509.2	2.8816	0.2424	928.957	929.13916	1	621.5	85.7%	2	R.GFGFILFK.D	2
	step02.13252.13252.2	4.3155	0.2712	1505.279	1504.6664	1	1678.5	80.8%	2	K.IFVGGLNPEATEEK.I	2

Similarities: gi|14110414|ref|NP_00(1:3)
gi|14110407|ref|NP_11(1:3)

U	gi\|212549553\|ref\|NP_0	8	10	13.5%	898	95808	8.8	interleukin enhancer-binding factor 3 isoform d [Homo sapiens]
U	gi\|24234756\|ref\|NP_70	8	10	17.5%	690	74607	8.2	interleukin enhancer-binding factor 3 isoform c [Homo sapiens]
U	gi\|24234753\|ref\|NP_00	8	10	17.2%	702	76033	7.8	interleukin enhancer-binding factor 3 isoform b [Homo sapiens]
U	gi\|24234750\|ref\|NP_03	8	10	13.5%	894	95339	8.8	interleukin enhancer-binding factor 3 isoform a [Homo sapiens]
U	gi\|212549555\|ref\|NP_0	8	10	17.1%	706	76502	7.9	interleukin enhancer-binding factor 3 isoform e [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.19449.19449.3	4.1333	0.1549	3331.172	3330.771	2	545.6	22.5%	1	K.VADNLAIQLAAVTEDKYEILQSVDDAAIVIK.N	3
step02.14186.14186.2	4.9621	0.5295	1912.405	1911.1028	1	773.9	58.8%	1	K.VLAGETLSVNDPPDVLDR.Q	2
step06.17818.17818.2	2.5379	0.2641	926.199	926.0969	3	645.0	85.7%	1	R.VPTWGPLR.G	2
step02.15282.15282.2	3.2217	0.2427	2528.056	2527.8171	1	434.6	43.2%	1	R.VLECLASGIVM*PDGSGIYDPCEK.E	2
step03.10922.10922.2	3.4415	0.3258	1369.505	1369.4657	1	814.1	81.8%	2	R.EDITQSAQHALR.L	2
step06.17657.17657.2	2.361	0.199	984.907	985.16437	2	706.7	81.2%	1	R.LAAFGQLHK.V	2
step03.10278.10278.2	2.6647	0.282	1072.989	1073.2885	1	711.5	83.3%	2	K.VLGM*DPLPSK.M	2
step03.14608.14608.2	3.553	0.3817	1021.468	1021.1918	1	1570.5	94.4%	1	K.AYAALAALEK.L	2

U	gi\|14141166\|ref\|NP_11	3	7	13.5%	362	38222	6.8	poly(rC)-binding protein 2 isoform b [Homo sapiens]
U	gi\|193083114\|ref\|NP_0	3	7	15.4%	318	33497	8.2	poly(rC)-binding protein 2 isoform g [Homo sapiens]
U	gi\|193083112\|ref\|NP_0	3	7	14.6%	335	35347	8.0	poly(rC)-binding protein 2 isoform f [Homo sapiens]
U	gi\|193083110\|ref\|NP_0	3	7	13.6%	361	38151	6.8	poly(rC)-binding protein 2 isoform e [Homo sapiens]
U	gi\|193083108\|ref\|NP_0	3	7	13.4%	365	38580	6.8	poly(rC)-binding protein 2 isoform d [Homo sapiens]
U	gi\|148833484\|ref\|NP_0	3	7	14.8%	331	34917	8.0	poly(rC)-binding protein 2 isoform c [Homo sapiens]
U	gi\|14141168\|ref\|NP_00	3	7	13.4%	366	38651	6.8	poly(rC)-binding protein 2 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.16460.16460.2	3.7374	0.4484	1359.519	1359.6387	1	960.0	79.2%	2	R.IITLAGPTNAIFK.A	2
step02.8346.8346.2	5.4139	0.5267	2091.612	2091.2463	1	1300.6	65.8%	3	R.ESTGAQVQVAGDMLPNSTER.A	2 2
step04.17137.17137.2	4.2411	0.5674	1714.595	1714.0336	1	837.5	73.3%	2	R.AITIAGIPQSIIECVK.Q	2

Similarities: gi|222352151|ref|NP_0(1:2)

gi|7661950|ref|NP_055

13.4%

1173

133502

6.8

RNA polymerase-associated protein CTR9 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15084.15086.2	3.5805	0.3786	1473.599	1473.7253	1	1575.2	86.4%	3	K.IIMYDQNHLLGR.A	2
*	step05.14238.14238.2	2.7932	0.3699	1489.389	1489.7247	1	907.5	81.8%	2	K.IIM*YDQNHLLGR.A	2
*	step04.13024.13024.2	2.885	0.3336	887.307	887.0191	1	803.3	92.9%	2	K.NGVQLLSR.A	2
*	step03.14048.14049.2	4.5034	0.5053	1680.911	1680.8408	1	1339.0	71.4%	3	K.ILGSLYAASEDQEKR.D	2
*	step05.16594.16594.2	5.5829	0.5427	2090.928	2090.3708	1	1485.1	80.6%	2	K.VQADVPPEILNNVGALHFR.L	2
*	step03.13934.13934.2	2.7982	0.4304	1467.528	1466.5734	1	354.5	75.0%	1	R.EHPNYVDCYLR.L	2
*	step02.16680.16682.2	4.1907	0.4669	1607.48	1607.7036	1	1383.7	83.3%	1	R.DKGNFYEASDWFK.E	2
*	step05.17662.17662.3	5.5703	0.5023	2585.876	2584.8713	1	1381.3	38.6%	3	K.EALQINQDHPDAWSLIGNLHLAK.Q	3
*	step05.15339.15339.2	3.5348	0.4751	1513.648	1512.738	1	1408.6	75.0%	2	K.NLYAANGIGAVLAHK.G	2
*	step02.19401.19401.2	4.3211	0.45	2417.21	2416.671	1	811.7	52.5%	2	R.EATADISDVWLNLAHIYVEQK.Q	2
*	step02.14997.14997.2	2.7165	0.1636	2228.709	2229.2532	1	392.3	39.5%	2	K.GGEFDEFVNDDTDDDLPISK.K	2

gi|310115365|ref|XP_0

13.4%

492

53673

6.5

PREDICTED: protein FAM115A-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.19520.19522.2	3.6347	0.3538	1100.297	1100.3385	1	936.1	94.4%	1	K.LGPFLLNAVR.W	2 2
step03.11253.11253.2	2.6005	0.313	958.179	958.13727	2	542.8	85.7%	1	K.IVVQTELR.T	2 2
step04.17682.17682.2	3.7496	0.2616	2583.892	2583.9468	1	476.1	43.5%	2	K.LGPDGAAFLQIPAEEIPAYMSVHR.L	2 2
step05.16924.16924.2	3.6028	0.4902	2599.033	2599.946	1	477.3	41.3%	3	K.LGPDGAAFLQIPAEEIPAYM*SVHR.L	2 2
step04.16978.16978.3	6.547	0.5207	2599.878	2599.946	1	1768.1	42.4%	2	K.LGPDGAAFLQIPAEEIPAYM*SVHR.L	3 3
step05.16612.16612.2	3.2579	0.4953	1604.745	1604.8477	1	1361.0	83.3%	1	R.YCWMSTGLYIPGR.Q	2 2
step02.16824.16824.2	3.215	0.3599	1318.614	1318.527	1	2190.9	85.0%	2	R.LWDEVMQAVAR.L	2 2

Similarities: gi|7662276|ref|NP_055(7:0)

U	gi\|17505189\|ref\|NP_49	5	10	13.3%	564	60200	8.0	keratin 6C; keratin, epidermal type II, K6C; cytokeratin 6C; type II keratin isoform K6c [Homo sapiens]
U	gi\|5031839\|ref\|NP_005	5	15	13.3%	564	60045	8.0	keratin, type II cytoskeletal 6A [Homo sapiens] keratin 6A; keratin, epidermal type II, K6A; cytokeratin 6A; 56 cytoskeletal type II keratin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.11497.11497.2	2.7779	0.4224	1425.354	1425.4828	1	968.3	62.5%	1	R.GSGGLGGACGGAGFGSR.S	2 2 2 2
	step04.12933.12933.2	4.1704	0.5749	1599.179	1599.7212	1	1253.7	68.8%	2	R.ISIGGGSCAISGGYGSR.A	2 2 2 2
2	step03.11976.11976.2	4.3422	0.2677	1478.96	1477.6873	1	1772.9	90.9%	4	R.FLEQQNKVLETK.W	2 2
	step02.18066.18066.1	2.2392	0.09	1329.837	1330.5093	1	555.3	72.7%	1	R.NLDLDSIIAEVK.A	1 1 1 1 1 1 1 1
	step04.12796.12796.2	4.7653	0.5287	1448.481	1448.6044	1	1559.0	81.2%	2	R.AIGGGLSSVGGGSSTIK.Y	2 2

gi|118498359|ref|NP_0

13.3%

490

54973

10.1

ribosomal L1 domain-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19184.19184.2	4.5556	0.4721	1532.964	1532.7213	1	2021.8	87.5%	1	R.LLSSFDFFLTDAR.I	2
*	step02.13917.13917.2	4.3263	0.4538	1633.591	1633.819	1	1584.1	78.6%	2	R.EINDCIGGTVLNISK.S	2
*	step04.19242.19242.2	5.1783	0.5025	2226.822	2227.461	1	972.4	57.9%	3	K.SAALPIFSSFVSNWDEATKR.S	2
*	step02.14627.14627.2	2.7422	0.3106	1840.827	1841.0093	1	584.2	53.1%	2	K.ATNESEDEIPQLVPIGK.K	2

gi|21361875|ref|NP_11

13.3%

475

54855

4.9

protein LTV1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17902.17902.2	5.526	0.5785	2082.793	2082.296	1	2698.9	77.8%	1	K.LPSSVFASEFEEDVGLLNK.A	2
*	step02.11969.11969.2	3.3796	0.3547	1285.047	1285.4271	1	1109.0	88.9%	2	R.LQEVLNDYYK.E	2
*	step05.19958.19958.2	2.5497	0.1335	1653.693	1653.8445	9	228.8	36.1%	1	K.YQPKPKQIRIS#SK.T	2 3
*	step05.15200.15200.2	2.2855	0.4541	1052.056	1052.2921	1	419.7	83.3%	1	K.TGIPLNVLPK.K	2
*	step03.10072.10072.2	2.6276	0.2969	1232.386	1232.4324	1	1095.1	80.0%	2	R.IQM*INGSDLPK.V	2

gi|108936958|ref|NP_0

13.2%

342

38926

5.5

DDB1- and CUL4-associated factor 7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15996.15996.2	3.7186	0.4707	1484.618	1484.6351	1	1747.4	83.3%	1	R.LALGSFVEEYNNK.V	2
*	step02.17096.17096.2	4.4231	0.5225	1641.501	1640.8182	1	1597.1	78.6%	2	K.GVYPDLLATSGDYLR.V	2
*	step04.16060.16060.2	2.5514	0.2809	2005.846	2007.2354	1	897.7	56.2%	1	K.TQLIAHDKEVYDIAFSR.A	2

U	gi\|15431306\|ref\|NP_15	4	11	13.2%	257	28025	11.0	60S ribosomal protein L8 [Homo sapiens]
U	gi\|4506663\|ref\|NP_000	4	11	13.2%	257	28025	11.0	60S ribosomal protein L8 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13173.13173.2	4.3415	0.5283	1690.421	1689.8077	1	1178.2	66.7%	5	R.ASGNYATVISHNPETK.K	2
step04.11030.11030.1	1.8316	0.3261	941.385	942.0979	1	379.1	65.0%	1	R.AVVGVVAGGGR.I	1
step04.10921.10921.2	3.3424	0.4748	942.133	942.0979	1	1863.2	90.0%	3	R.AVVGVVAGGGR.I	2
step04.12765.12765.2	2.4302	0.2147	700.241	699.865	1	953.8	91.7%	2	K.VGLIAAR.R	2

gi|76880486|ref|NP_00

13.1%

2202

251458

7.1

activating signal cointegrator 1 complex subunit 3 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19340.19340.2	4.6492	0.4171	1928.769	1929.228	1	1137.5	62.5%	4	R.EAIESGAAFLFM*TFHLK.D	2
*	step02.20313.20313.2	4.756	0.5306	1931.651	1932.2122	1	3054.7	80.0%	2	R.VEDLCCTLYDMLASIK.S	2
*	step02.20436.20438.2	5.5872	0.5035	2573.963	2574.8186	1	1307.2	63.6%	4	K.SGDELQDELFELLGPEGLELIEK.L	2
*	step02.20444.20444.3	5.0888	0.2597	2575.355	2574.8186	1	3338.3	48.9%	2	K.SGDELQDELFELLGPEGLELIEK.L	3
*	step03.12786.12786.3	4.7733	0.337	2507.528	2507.7322	1	1076.0	34.5%	2	K.ILGENAKPNYGCQVTIQSEQEK.Q	3
*	step03.19336.19336.3	6.4413	0.5511	3498.608	3498.9854	1	1458.7	37.1%	2	R.IPYSEPMPLSFEEKPVYIQDLDEIGQLAFK.G	3
*	step03.18950.18950.3	6.2344	0.4659	3514.976	3514.9849	1	1619.6	36.2%	2	R.IPYSEPM*PLSFEEKPVYIQDLDEIGQLAFK.G	3
*	step05.17414.17414.2	4.3275	0.3905	1511.794	1511.8151	1	2300.4	87.5%	2	K.TNIAMLTVLHEIR.Q	2
*	step04.11067.11067.2	2.5108	0.3139	937.364	937.1814	1	452.1	85.7%	1	K.IVYVAPM*K.A	2
*	step02.8901.8901.2	2.8724	0.3433	1391.043	1391.5315	1	1112.1	77.3%	2	K.ALAAEM*TDYFSR.R	2
*	step06.18864.18864.2	2.6315	0.2797	1138.89	1138.4282	1	667.4	72.2%	2	R.RLEPLGIIVK.E	2
*	step05.15089.15089.2	2.3471	0.2451	1373.17	1372.5958	1	687.3	58.3%	1	R.KSVGDVALSQIVR.L	2
*	step02.14412.14412.2	3.8396	0.38	1244.071	1244.4229	1	1499.3	81.8%	2	K.SVGDVALSQIVR.L	2
*	step03.17014.17014.2	3.1649	0.3762	1843.172	1842.9855	1	531.7	53.6%	1	K.YNTIETFNELFDAHK.T	2
*	step03.18440.18440.3	4.5359	0.5735	3004.441	3004.2952	1	718.9	29.0%	2	K.YNTIETFNELFDAHKTEGDIFAIVSK.A	3
*	step05.17363.17363.2	2.3212	0.1408	1086.395	1086.2704	6	342.1	68.8%	1	R.LWGWASPLR.Q	2
*	step05.14752.14752.2	2.4232	0.4068	1186.545	1186.3866	1	726.5	72.7%	1	R.IVGLSTALANAR.D	2
*	step04.129.129.3	3.7316	0.3886	2965.632	2964.339	1	530.9	31.2%	1	R.LTALELIAFLATEEDPKQWLNM*DER.E	3
*	step02.20085.20085.2	5.5108	0.5243	1786.683	1786.1086	1	1901.0	85.7%	2	R.YVDFPITDVLQMMGR.A	2
*	step03.19418.19418.3	3.7918	0.2597	3008.806	3009.302	2	720.7	28.0%	2	R.LKPECSTEELLSILSDAEEYTDLPVR.H	3
*	step02.13654.13654.2	2.9108	0.397	1162.333	1162.3154	3	706.1	75.0%	2	K.VSDSLTDLALK.-	2

gi|24497612|ref|NP_11

13.1%

649

72696

6.9

ubiquitin-associated and SH3 domain-containing protein B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18854.18854.3	6.518	0.5699	2745.074	2744.004	1	3388.7	47.8%	2	R.SVQAACDWLFSHVGDPFLDDPLPR.E	3
*	step06.18734.18734.2	5.2332	0.4498	1748.981	1749.0463	1	1138.6	78.6%	2	R.EYVLYLRPTGPLAQK.L	2
*	step06.21536.21536.2	2.2175	0.1899	2343.412	2344.7327	1	545.9	40.0%	1	K.FSAPLPLELYTSSNFIGLFVK.E	2
*	step05.16805.16805.3	4.0143	0.3325	2915.767	2915.308	1	877.8	33.3%	2	R.RPYEDQGLGETTPLTIICQPMQPLR.V	3

gi|4505931|ref|NP_002

13.1%

335

38178

8.9

DNA polymerase beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19228.19228.2	3.0294	0.2245	2522.992	2521.8289	5	250.2	34.1%	1	R.KAPQETLNGGITDMLTELANFEK.N	2
*	step05.14898.14898.2	3.313	0.3848	1336.17	1335.5771	1	1204.4	80.0%	1	K.LLHQVVEQLQK.V	2
*	step05.12005.12005.2	2.5572	0.4311	1183.317	1183.3964	1	1321.9	88.9%	2	K.FM*GVCQLPSK.N	2

U	gi\|156151392\|ref\|NP_0	6	8	13.0%	532	59682	9.2	heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
U	gi\|156151396\|ref\|NP_0	6	8	12.9%	535	59953	9.2	heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.9738.9738.2	3.0474	0.455	1312.582	1312.411	1	443.3	63.6%	1	R.TGYTLDVTTGQR.K	2 2 2 2
step02.18102.18104.2	4.1987	0.4117	1611.089	1610.7856	1	1426.2	83.3%	1	R.DLYEDELVPLFEK.A	2 2
step05.14286.14286.2	2.5222	0.2908	861.272	861.0632	5	642.9	92.9%	2	R.LFVGSIPK.N	2 2 2 2
step03.15225.15225.2	3.3279	0.3268	1338.491	1338.4883	1	1370.5	85.0%	2	K.TKENILEEFSK.V	2 2
step03.15634.15634.2	2.8718	0.2873	1446.057	1445.5509	1	910.0	75.0%	1	R.GFCFLEYEDHK.S	2 2 2 2
step03.13106.13106.2	3.5091	0.4586	1759.523	1759.855	1	917.6	73.1%	1	R.STAYEDYYYHPPPR.M	2 2

Similarities: gi|228008396|ref|NP_0(3:3)
gi|228008291|ref|NP_0(3:3)
gi|156151394|ref|NP_0(6:0)

gi|4758616|ref|NP_002

13.0%

331

35676

8.8

transcription factor AP-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15750.15750.2	2.5353	0.2444	1473.585	1472.6658	1	807.9	61.5%	1	K.NSDLLTSPDVGLLK.L	2
*	step02.13791.13791.2	4.1156	0.4381	1698.425	1698.7715	1	1706.0	75.0%	2	K.NVTDEQEGFAEGFVR.A	2
*	step02.12456.12456.2	2.688	0.2525	1506.481	1506.6674	1	1593.2	76.9%	1	K.AQNSELASTANMLR.E	2

gi|8392875|ref|NP_037

13.0%

193

22774

9.8

transcription factor IIB [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19341.19341.2	4.252	0.108	2095.865	2096.2876	1	1956.0	65.6%	2	R.LDDGWNQIQFNLLDFTR.R	2
*	step04.13807.13807.2	2.2448	0.1361	975.399	975.16626	2	624.1	78.6%	1	K.LYLPVQNK.A	2

U	gi\|13435356\|ref\|NP_00	2	3	12.9%	279	31621	4.9	HCLS1-associated protein X-1 isoform a [Homo sapiens]
U	gi\|66363694\|ref\|NP_00	2	3	15.6%	231	26100	5.2	HCLS1-associated protein X-1 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.16270.16270.2	2.9563	0.3667	1482.334	1482.581	1	1107.9	81.8%	1	R.FHDNFGFDDLVR.D	2
	step04.1187.1187.3	4.0016	0.4446	2599.212	2599.8794	1	930.3	30.4%	2	R.GDPESPRPPALDDAFSILDLFLGR.W	3

gi|15431290|ref|NP_00

12.9%

178

20252

9.6

60S ribosomal protein L11 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14358.14358.2	3.7057	0.4481	1547.672	1547.7775	1	1692.4	84.6%	4	K.VLEQLTGQTPVFSK.A	2
*	step02.12491.12491.2	2.9066	0.4481	976.425	976.151	1	1011.6	87.5%	2	K.YDGIILPGK.-	2

gi|13676857|ref|NP_06

12.8%

639

70021

5.7

heat shock-related 70 kDa protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step02.6416.6416.2	3.5419	0.3117	1229.049	1229.3252	1	1603.5	90.0%	2	K.VEIIANDQGNR.T	2 2 2 2 2 2 2
	step02.11734.11734.1	2.6963	0.3675	1488.639	1488.5806	1	149.2	54.2%	1	R.TTPSYVAFTDTER.L	1 1 1 1 1 1
	step02.11726.11726.2	3.224	0.5674	1489.092	1488.5806	1	772.6	79.2%	3	R.TTPSYVAFTDTER.L	2 2 2 2 2 2
	step02.15549.15549.3	4.1068	0.3652	1661.199	1660.8926	1	1644.0	50.0%	2	R.IINEPTAAAIAYGLDK.K	3 3 3 3 3
	step02.15512.15512.2	5.4778	0.5193	1661.592	1660.8926	1	1852.4	86.7%	2	R.IINEPTAAAIAYGLDK.K	2 2 2 2 2
	step03.15051.15051.2	4.9013	0.5064	1789.72	1789.0656	1	1549.5	81.2%	2	R.IINEPTAAAIAYGLDKK.G	2 2 2
	step02.7210.7210.2	2.6766	0.3713	1692.563	1692.6823	1	781.7	53.3%	2	K.STAGDTHLGGEDFDNR.M	2 2 2
	step03.15950.15950.2	3.6143	0.3576	1481.345	1481.6377	1	788.5	77.3%	4	R.ARFEELNADLFR.G	2 2 2
	step03.15973.15973.3	4.375	0.3372	1482.364	1481.6377	1	1707.7	59.1%	2	R.ARFEELNADLFR.G	3 3 3
	step02.16314.16316.2	3.1483	0.3367	1254.071	1254.373	1	1139.3	83.3%	1	R.FEELNADLFR.G	2 2 2
	step03.15768.15768.2	3.0311	0.4053	1082.423	1082.2336	1	772.8	87.5%	3	K.LLQDFFNGK.E	2 2 2 2
	step02.16449.16449.1	2.1776	0.2814	1082.615	1082.2336	1	463.0	68.8%	4	K.LLQDFFNGK.E	1 1 1 1
	step03.15928.15928.2	4.3288	0.3484	1567.078	1566.7825	1	1633.9	83.3%	1	K.LLQDFFNGKELNK.S	2 2 2 2

Similarities: gi|167466173|ref|NP_0(3:10)
gi|24234686|ref|NP_69(13:0)
gi|5729877|ref|NP_006(13:0)
gi|16507237|ref|NP_00(3:10)
gi|124256496|ref|NP_0(5:8)
gi|34419635|ref|NP_00(6:7)

gi|310129666|ref|XP_9

12.8%

384

44008

5.1

PREDICTED: anaphase-promoting complex subunit 2-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17231.17231.2	3.4662	0.3498	1107.57	1106.2966	1	1142.2	93.8%	2	R.IEELFSIVR.D	2 2
step03.19615.19615.2	4.8307	0.5486	1583.545	1582.8202	1	2185.5	82.1%	6	R.SSDIISLLVSIYGSK.D	2 2
step06.18475.18475.2	3.0926	0.4894	1361.859	1361.53	1	1028.1	85.0%	2	R.LLHQFSFSPER.E	2 2
step04.16572.16572.2	4.3259	0.4801	1696.421	1697.0085	1	1181.5	76.9%	2	R.FGEAPMHFCEVMLK.D	2 2
step04.15646.15646.2	3.9451	0.4991	1713.721	1713.0079	1	486.3	69.2%	2	R.FGEAPM*HFCEVMLK.D	2 2
step04.14871.14871.2	2.6122	0.3116	1728.188	1729.0073	1	321.1	61.5%	1	R.FGEAPMHFCEVMLK.D	2 2

Similarities: gi|7019327|ref|NP_037(6:0)

gi|12232469|ref|NP_07

12.8%

391

43993

6.1

protein RMD5 homolog A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11766.11766.2	2.6073	0.3191	1218.205	1217.3063	1	1266.8	94.4%	2	K.FSGYGQLCER.G	2
*	step04.17737.17737.2	4.6937	0.3565	1534.732	1534.8071	1	2051.2	90.9%	3	R.LLNEVMVEHFFR.Q	2
*	step05.18112.18112.2	4.8487	0.5687	1731.119	1731.0095	1	2728.3	89.3%	2	R.LYFISLLM*GGTTNQR.E	2
*	step06.19992.19992.2	3.8038	0.4607	1724.835	1723.9854	1	1202.1	75.0%	2	K.CWYHSIFACPILR.Q	2

gi|4557890|ref|NP_000

12.7%

590

62461

8.1

keratin 5; Keratin-5; 58 kda cytokeratin; keratin, type II cytoskeletal 5; cytokeratin 5 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.11774.11774.2	3.3461	0.3832	1732.877	1731.808	1	303.8	47.2%	1	R.TSFTSVSRSGGGGGGGFGR.V	2 2
step04.12535.12535.2	4.2727	0.5219	1411.266	1411.5392	1	2321.3	82.1%	1	R.VSLAGACGVGGYGSR.S	2 2
step02.18066.18066.1	2.2392	0.09	1329.837	1330.5093	1	555.3	72.7%	1	R.NLDLDSIIAEVK.A	1 1 1 1 1 1 1 1
step02.17526.17526.2	2.2275	0.0943	1619.662	1618.774	89	143.3	33.3%	1	R.LLREY#QELMNTK.L	2 2
step04.13456.13456.2	3.5517	0.4354	1440.63	1440.5408	1	1164.5	71.9%	1	R.GLGVGFGSGGGSSSSVK.F	2 2

gi|6912478|ref|NP_036

12.7%

536

60030

5.0

importin subunit alpha-7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.254.254.2	6.0283	0.4554	2090.867	2091.4702	1	2170.7	76.5%	5	R.DYVLNCSILNPLLTLLTK.S	2
	step04.16094.16094.2	3.287	0.4921	1304.121	1304.4735	1	1302.1	85.0%	2	R.NAVWALSNLCR.G	2 2 2
	step03.15580.15580.1	2.3615	0.2584	1375.5	1375.6184	1	318.8	55.0%	2	R.LVELLMHNDYK.V	1 1 1
	step03.14578.14578.2	2.5889	0.2405	1391.62	1391.6178	1	833.2	75.0%	1	R.LVELLM*HNDYK.V	2 2 2
	step02.13990.13990.2	3.6589	0.3248	1593.477	1593.7167	1	1733.8	80.8%	2	K.EACWTISNITAGNR.A	2 2
	step04.17814.17814.2	4.9981	0.4234	1552.822	1552.8436	1	2598.8	84.6%	3	K.IVQVALNGLENILR.L	2 2 2

Similarities: gi|222144293|ref|NP_0(5:1)
gi|39812229|ref|NP_00(4:2)

U	gi\|62953129\|ref\|NP_00	4	6	12.7%	355	40410	8.8	macrophage erythroblast attacher isoform 2 [Homo sapiens]
U	gi\|62953131\|ref\|NP_00	4	6	11.4%	396	45287	8.7	macrophage erythroblast attacher isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16370.16370.2	2.2139	0.1061	2078.772	2079.3845	29	214.4	46.9%	1	K.VQEYPTLKVPYETLNKR.F	2
step02.19792.19792.3	4.6488	0.3368	2146.397	2146.418	1	1432.4	38.8%	2	K.TLSGCPAVDSVVSLLDGVVEK.L	3
step04.14947.14947.2	2.6294	0.0859	936.247	936.1568	1	696.9	91.7%	1	R.MLIQQFR.Y	2
step04.13345.13345.2	2.9439	0.2452	952.545	952.1562	3	805.8	91.7%	2	R.M*LIQQFR.Y	2

U	gi\|224586882\|ref\|NP_0	3	8	12.6%	372	40090	9.8	DNA-binding protein A isoform a [Homo sapiens]
U	gi\|224586884\|ref\|NP_0	3	8	15.5%	303	31947	9.7	DNA-binding protein A isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.12747.12747.2	3.7689	0.366	1745.628	1745.9144	1	1044.5	75.0%	3	R.NDTKEDVFVHQTAIK.K	2 2 2
step02.13216.13216.2	4.4724	0.4672	1796.735	1796.8671	1	1641.8	75.0%	4	R.SVGDGETVEFDVVEGEK.G	2 2 2
step04.11896.11896.2	2.5543	0.2444	1560.327	1560.6964	1	512.4	64.3%	1	K.DGVPEGAQLQGPVHR.N	2

Similarities: gi|34098946|ref|NP_00(2:1)
gi|156415990|ref|NP_0(2:1)

gi|4557657|ref|NP_001

12.6%

206

23630

10.1

peptidyl-tRNA hydrolase ICT1, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16726.16726.2	3.1077	0.324	1640.659	1640.8663	1	1205.7	80.8%	2	R.FHLATAEWIAEPVR.Q	2
*	step02.13599.13599.2	2.2996	0.2145	1306.746	1305.4598	1	995.8	68.2%	1	R.LGELILTSESSR.Y	2

U	gi\|163965362\|ref\|NP_0	2	4	12.6%	215	23384	4.6	nascent polypeptide-associated complex subunit alpha isoform b [Homo sapiens]
U	gi\|5031931\|ref\|NP_005	2	4	12.6%	215	23384	4.6	nascent polypeptide-associated complex subunit alpha isoform b [Homo sapiens]
U	gi\|163965364\|ref\|NP_0	2	4	12.6%	215	23384	4.6	nascent polypeptide-associated complex subunit alpha isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.19576.19576.2	3.5437	0.3897	1550.699	1550.8661	1	1761.5	79.2%	2	K.NILFVITKPDVYK.S	2 2
	step02.14117.14117.2	4.8382	0.5159	1486.484	1485.6199	1	1701.4	84.6%	2	K.SPASDTYIVFGEAK.I	2 2

Similarities: gi|163965366|ref|NP_0(2:0)

gi|110347427|ref|NP_0

12.5%

3546

404234

5.8

ubiquitin carboxyl-terminal hydrolase 34 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16252.16252.2	2.9697	0.4362	1429.766	1429.6044	1	395.8	75.0%	1	K.IFTYINSWTQR.Q	2
*	step02.16443.16443.2	3.7138	0.3579	1756.213	1756.8478	1	944.6	71.4%	1	K.SSDPFSLWSTDEKEK.L	2
*	step05.18154.18154.2	5.398	0.4514	1633.99	1632.9257	1	1687.2	87.5%	3	K.IFQIQFPLYTAYK.H	2
*	step06.19823.19823.2	2.536	0.2897	1346.621	1346.5984	1	539.0	70.0%	2	R.YIHDLFPSLIK.N	2
*	step02.14583.14583.2	3.6681	0.1132	1707.668	1706.8351	1	801.9	64.3%	2	K.DLVFNTESLPSVDNR.M	2
*	step02.19692.19692.3	5.8614	0.3578	2987.492	2987.2214	1	1793.0	32.7%	1	K.GNTLLWDIVQDEDAVNLSEGLINEAEK.L	3
*	step04.19040.19040.2	4.0984	0.4595	1570.657	1570.8011	1	1362.9	81.8%	1	K.LLCSLVCWFTDR.Q	2
*	step02.13246.13246.2	3.6679	0.4151	1536.645	1536.665	1	1422.4	87.5%	2	R.FIEGCLENLGNNR.S	2
*	step04.20156.20156.2	4.3114	0.3657	1792.112	1792.0696	1	1379.6	73.1%	2	K.LFFDNLVYYIQTVR.E	2
*	step02.8285.8285.2	4.072	0.5619	2018.298	2019.1215	1	899.3	59.4%	1	K.EQINQQAQLQEFGQSNR.K	2
*	step06.716.716.2	6.5095	0.447	2344.782	2345.7222	1	2935.3	66.7%	6	K.FVAAGGLQQLLEIFNSGILEPK.E	2
*	step02.13150.13150.2	2.6057	0.2192	1631.229	1630.8468	1	535.0	65.4%	1	R.LM*SVAYTYDNLAPR.V	2
*	step02.16198.16198.2	4.0281	0.3265	1616.7	1615.7256	1	1251.0	69.2%	1	K.SSLADSDHLQDWLK.K	2
*	step06.19232.19232.2	3.0942	0.4316	1354.85	1354.6636	1	985.4	72.7%	2	K.KLTLLIPETAVR.H	2
*	step05.20540.20540.2	4.2791	0.4413	1277.469	1277.5775	1	1758.6	81.8%	4	R.SFLLLAASTLLK.F	2
*	step06.17629.17629.2	2.9125	0.3941	1369.872	1369.6367	1	383.7	68.2%	2	K.FLPDAQALKPIR.I	2
*	step02.17050.17050.2	5.1003	0.375	1604.767	1603.7563	1	2138.0	82.1%	2	K.DASQTTLLDLDALAR.H	2
*	step02.16762.16762.2	3.612	0.4551	2209.918	2210.344	1	703.2	57.9%	2	R.EILDHQDGNVEDDGLTGLLR.L	2
*	step06.1418.1418.2	4.0065	0.3975	1534.488	1533.8787	1	730.9	75.0%	5	R.DIFNLLFLLPSLK.D	2
*	step02.19280.19280.2	4.5415	0.349	1461.663	1461.6617	1	1631.9	86.4%	2	K.DMTEFFTDLITK.I	2
*	step05.20122.20122.2	3.1414	0.314	1730.757	1731.0927	1	414.6	69.2%	3	K.EKPTMLQWIELLTK.Q	2
*	step05.13138.13138.2	4.1514	0.5996	1660.749	1660.8745	1	991.0	76.7%	2	R.HLTLSQTDM*AALTGGK.G	2
*	step05.18214.18214.2	5.5711	0.517	2013.299	2013.2683	1	2083.0	76.7%	2	K.LAHSWVLQNMENWVER.F	2
*	step05.19164.19164.2	2.5671	0.3528	1840.121	1840.1125	1	533.2	56.2%	1	R.TSAAYLLVSLIPSNSFR.Q	2
*	step04.13002.13002.2	2.9814	0.3364	1111.533	1111.3596	2	621.1	77.8%	2	R.LIVQNPVVTK.N	2
*	step05.16828.16828.2	2.548	0.2991	1254.29	1254.526	1	524.3	75.0%	1	R.GMLPAYYGILR.L	2
*	step04.18127.18127.2	3.2179	0.5356	1343.407	1342.5184	1	1472.0	85.0%	3	R.SCWTTLISAFR.I	2
*	step02.17292.17292.2	3.2602	0.3613	1598.716	1597.8267	1	812.6	70.8%	2	K.LLCEDPVFAEYIK.C	2
*	step05.19046.19046.2	3.0729	0.1646	1778.667	1779.1138	1	423.5	53.3%	2	K.QLNPALIPTLQELLSK.C	2
*	step02.20505.20505.2	3.6786	0.4983	2883.455	2884.0532	1	663.6	40.4%	2	K.DSTLAEEESEFPSTSISAVLSDLADLR.S	2
*	step02.20482.20482.3	3.9149	0.5052	2885.093	2884.0532	1	1134.0	28.8%	1	K.DSTLAEEESEFPSTSISAVLSDLADLR.S	3

U	gi\|45827729\|ref\|NP_05	16	27	12.5%	1630	174930	5.1	protein scribble homolog isoform b [Homo sapiens]
U	gi\|45827731\|ref\|NP_87	16	27	12.3%	1655	177739	5.1	protein scribble homolog isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.14220.14220.2	3.9888	0.4096	1602.664	1602.7667	1	1177.2	79.2%	2	R.HCSLQAVPEEIYR.Y	2
step02.18432.18434.2	4.0858	0.2899	1514.356	1514.7059	1	1750.7	79.2%	1	R.SLEELLLDANQLR.E	2 2
step03.11782.11782.2	2.9218	0.3268	1273.588	1273.4211	1	916.5	85.0%	1	R.KLGLSDNEIQR.L	2 2
step03.20115.20115.2	4.1167	0.519	2057.063	2058.3872	1	3273.1	79.4%	1	R.LPPEVANFMQLVELDVSR.N	2
step03.20080.20080.3	4.7303	0.4013	2058.647	2058.3872	1	2441.7	48.5%	2	R.LPPEVANFMQLVELDVSR.N	3
step03.18309.18309.3	4.7126	0.3507	3309.901	3310.7634	1	1090.5	33.9%	2	R.LPPEVANFM*QLVELDVSRNDIPEIPESIK.F	3
step02.16052.16052.2	4.262	0.4385	1490.514	1490.6428	1	2085.0	80.8%	2	K.ALEIADFSGNPLSR.L	2
step06.21214.21214.3	5.3902	0.4631	3227.422	3228.6885	1	2152.7	35.0%	2	R.SLAHLALNDVSLQALPGDVGNLANLVTLELR.E	3
step05.17108.17108.2	2.7426	0.3569	1162.553	1162.4034	1	382.0	80.0%	1	K.SLPASLSFLVK.L	2
step02.18686.18686.2	6.0979	0.5373	2676.364	2677.0037	1	1873.5	62.5%	2	K.LEQLDLGGNDLEVLPDTLGALPNLR.E	2
step02.18669.18669.3	4.2988	0.3394	2678.243	2677.0037	1	1169.7	36.5%	2	K.LEQLDLGGNDLEVLPDTLGALPNLR.E	3
step06.16457.16457.2	2.5562	0.2704	1097.572	1097.2931	4	657.0	72.2%	2	R.RLPDGIGQLK.Q	2
step02.18804.18804.2	3.9948	0.4931	2587.954	2588.8086	1	922.9	52.2%	2	R.VSVIQFLEAPIGDEDAEEAAAEKR.G	2
step02.18794.18794.3	4.3612	0.4306	2588.433	2588.8086	13	437.2	26.1%	2	R.VSVIQFLEAPIGDEDAEEAAAEKR.G	3
step05.17844.17844.3	3.5191	0.2897	2432.98	2432.8044	1	939.7	35.7%	1	R.LLEVNQQSLLGLTHGEAVQLLR.S	3
step05.17847.17847.2	4.0032	0.4995	2433.716	2432.8044	1	1119.8	50.0%	2	R.LLEVNQQSLLGLTHGEAVQLLR.S	2

Similarities: gi|95113664|ref|NP_06(2:14)

U	gi\|294832006\|ref\|NP_0	4	11	12.5%	457	53000	6.5	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform 2 [Homo sapiens]
U	gi\|4506019\|ref\|NP_002	4	11	12.8%	447	51692	6.2	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16209.16209.2	3.7279	0.5167	2453.801	2454.5881	1	1391.9	57.9%	2	R.GEYNVYSTFQSHEPEFDYLK.S	2 2 2
step02.14040.14040.2	3.8819	0.527	1323.438	1322.449	1	1826.3	86.4%	2	K.NAAQFLLSTNDK.T	2
step05.17146.17146.2	3.4648	0.4541	1409.927	1410.6025	1	1505.0	85.0%	2	R.INLWHLEITDR.S	2 2
step03.117.117.2	4.6826	0.5106	1560.604	1559.742	1	2774.5	88.5%	5	R.SFFSEIISSISDVK.F	2 2 2

Similarities: gi|51093851|ref|NP_06(3:1)
gi|188497696|ref|NP_0(2:2)

gi|300360505|ref|NP_0

12.4%

832

96036

5.0

importin-8 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.16225.16225.2	3.2529	0.5163	1333.624	1333.6012	1	1584.7	86.4%	1	K.TYAVGIQQVLLK.I	2 2
step03.18121.18121.3	3.8568	0.4183	2799.039	2798.1597	29	254.6	26.0%	1	R.MKFDIFEDYASPTTAAQTLLYTAAK.K	3 3
step02.19048.19048.2	4.9946	0.4013	2539.804	2538.7898	1	680.9	45.5%	1	K.FDIFEDYASPTTAAQTLLYTAAK.K	2 2
step02.18107.18107.2	3.5199	0.4534	2121.146	2120.431	1	725.6	46.9%	2	K.MMAFCYQILTDPNFDPR.K	2 2
step06.41.41.2	2.8501	0.4039	1649.633	1649.956	1	1133.4	66.7%	1	K.DGALHVIGSLAEILLK.K	2 2
step03.20392.20392.2	4.6037	0.4099	1901.793	1901.2324	1	878.1	70.0%	3	R.GIDQCIPLFVQLVLER.L	2 2
step03.20419.20419.3	3.7626	0.3353	1901.847	1901.2324	1	1687.8	51.7%	1	R.GIDQCIPLFVQLVLER.L	3 3
step02.19342.19342.2	4.4676	0.4887	2008.755	2008.2437	1	1660.0	71.9%	4	R.DAAWYQLLMAPLSEDQR.T	2 2

Similarities: gi|53759103|ref|NP_00(8:0)

U	gi\|156151394\|ref\|NP_0	7	9	12.4%	636	71214	8.1	heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
U	gi\|5031755\|ref\|NP_005	7	9	12.5%	633	70943	8.1	heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.12771.12771.2	2.9537	0.3712	1069.891	1070.2644	1	1233.6	83.3%	1	K.TLIEAGLPQK.V	2
step02.9738.9738.2	3.0474	0.455	1312.582	1312.411	1	443.3	63.6%	1	R.TGYTLDVTTGQR.K	2 2 2 2
step02.18102.18104.2	4.1987	0.4117	1611.089	1610.7856	1	1426.2	83.3%	1	R.DLYEDELVPLFEK.A	2 2
step05.14286.14286.2	2.5222	0.2908	861.272	861.0632	5	642.9	92.9%	2	R.LFVGSIPK.N	2 2 2 2
step03.15225.15225.2	3.3279	0.3268	1338.491	1338.4883	1	1370.5	85.0%	2	K.TKENILEEFSK.V	2 2
step03.15634.15634.2	2.8718	0.2873	1446.057	1445.5509	1	910.0	75.0%	1	R.GFCFLEYEDHK.S	2 2 2 2
step03.13106.13106.2	3.5091	0.4586	1759.523	1759.855	1	917.6	73.1%	1	R.STAYEDYYYHPPPR.M	2 2

Similarities: gi|228008396|ref|NP_0(3:4)
gi|228008291|ref|NP_0(3:4)
gi|156151392|ref|NP_0(6:1)

gi|310114721|ref|XP_0

12.4%

477

50568

6.1

PREDICTED: putative tubulin beta-4q chain-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15297.15297.2	4.9629	0.5037	1603.704	1602.835	1	1478.3	82.1%	4	R.AVLVDLEPGTMDSVR.S	2 2 2 2 2
2	step06.19010.19010.3	6.7555	0.5846	3442.667	3441.7993	1	3270.6	35.9%	4	R.KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
2	step03.16218.16218.3	7.1499	0.5735	3314.09	3313.6262	1	2606.3	34.7%	5	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
	step03.13345.13345.2	2.7217	0.3898	1130.843	1131.2664	1	1043.8	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2 2
	step06.16523.16523.2	2.4043	0.2616	1259.535	1259.4392	1	704.5	75.0%	2	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2 2

U	gi\|18765707\|ref\|NP_57	3	9	12.4%	372	42784	6.5	inositol polyphosphate 5-phosphatase K isoform 2 [Homo sapiens]
U	gi\|208610044\|ref\|NP_0	3	9	12.4%	372	42784	6.5	inositol polyphosphate 5-phosphatase K isoform 2 [Homo sapiens]
U	gi\|18765709\|ref\|NP_05	3	9	10.3%	448	51090	6.5	inositol polyphosphate 5-phosphatase K isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.19354.19354.2	2.8213	0.3212	1604.591	1604.8739	1	525.9	66.7%	2	K.YQHLPYIQILSTK.S	2
step04.16699.16700.2	3.2284	0.4307	1428.828	1428.5732	1	688.7	79.2%	3	K.STPTGLFGYWGNK.G	2
step04.520.520.2	4.9327	0.6421	2445.952	2445.7805	1	1644.0	63.2%	4	R.DIPNILDHDLIIWFGDMNFR.I	2

gi|34740329|ref|NP_91

12.4%

378

39595

9.0

heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16059.16059.2	3.4585	0.3707	2012.536	2012.252	1	420.7	46.9%	1	K.KIFVGGIKEDTEEYNLR.D	2
3	step04.14000.14000.1	1.8094	0.1221	733.649	733.9214	2	519.6	75.0%	1	K.IFVGGIK.E	1 1 1 1 1
*	step03.14775.14775.2	4.7845	0.4381	1883.728	1884.079	1	1993.9	80.0%	2	K.IFVGGIKEDTEEYNLR.D	2
*	step02.8136.8136.2	2.8704	0.3736	1235.369	1235.3899	1	898.7	94.4%	1	K.IETIEVMEDR.Q	2
*	step01.5141.5141.2	3.0673	0.2967	1860.317	1859.974	36	240.4	42.9%	2	K.IETIEVM*EDRQS#GKK.R	2
*	step02.16752.16752.2	4.6862	0.4415	1715.912	1714.8125	1	1782.5	82.1%	3	R.GFAFVTFDDHDTVDK.I	2

Similarities: gi|14043072|ref|NP_11(1:5)
gi|58761496|ref|NP_00(1:5)
gi|14043070|ref|NP_11(1:5)
gi|5803036|ref|NP_006(1:5)

U	gi\|38045913\|ref\|NP_93	2	4	12.4%	177	19654	5.6	nucleoside diphosphate kinase A isoform a [Homo sapiens]
U	gi\|4557797\|ref\|NP_000	2	4	14.5%	152	17149	6.2	nucleoside diphosphate kinase A isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14110.14110.2	2.9181	0.3992	1345.534	1345.572	1	638.6	68.2%	2	R.TFIAIKPDGVQR.G	2 2 2
	step06.18715.18715.2	2.4238	0.3872	1150.679	1150.3544	1	520.1	77.8%	2	K.DRPFFAGLVK.Y	2 2

Similarities: gi|4505409|ref|NP_002(1:1)
gi|66392203|ref|NP_00(2:0)

U	gi\|21361437\|ref\|NP_05	11	20	12.3%	755	85853	4.4	HIV Tat-specific factor 1 [Homo sapiens]
U	gi\|253970456\|ref\|NP_0	11	20	12.3%	755	85853	4.4	HIV Tat-specific factor 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15220.15220.2	2.2034	0.1381	737.179	736.9488	1	628.5	90.0%	1	K.FGIIMR.D	2
step02.8064.8064.1	1.8782	0.2561	888.577	889.02856	4	183.6	64.3%	1	R.ESVELALK.L	1
step03.17572.17572.2	5.0009	0.403	2334.158	2333.629	1	1783.9	69.4%	2	K.NMFHPMDFEDDPLVLNEIR.E	2
step03.16242.16242.2	4.0358	0.2985	2365.067	2365.6277	1	740.7	61.1%	2	K.NMFHPMDFEDDPLVLNEIR.E	2
step06.19417.19417.2	2.9282	0.2376	905.331	905.11914	1	865.3	100.0%	2	R.KLLLFDR.H	2
step05.16844.16844.2	4.7819	0.4959	1744.722	1744.9346	1	1588.3	82.1%	4	R.LRGWEAFLNAPEANR.G	2
step05.16784.16784.3	4.0518	0.2664	1745.462	1744.9346	1	1510.9	51.8%	1	R.LRGWEAFLNAPEANR.G	3
step02.12958.12958.2	5.3124	0.5492	2112.945	2113.312	1	2803.4	75.0%	3	K.MNAQETATGMAFEEPIDEK.K	2
step02.7942.7942.2	5.6197	0.4426	2129.714	2129.3115	1	2277.3	72.2%	2	K.MNAQETATGM*AFEEPIDEK.K	2
step02.13401.13401.2	2.2346	0.1144	2241.358	2241.4849	2	225.6	31.6%	1	K.MNAQETATGMAFEEPIDEKK.F	2
step02.5363.5363.2	4.533	0.3578	2272.442	2273.111	1	668.7	62.7%	1	K.VFDDES#DEKEDEEYADEK.G	2

gi|52632385|ref|NP_00

12.3%

456

50561

7.5

heterogeneous nuclear ribonucleoprotein L isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.17642.17642.2	4.6588	0.4829	1589.661	1589.8096	1	2052.4	87.5%	4	R.VFNVFCLYGNVEK.V	2 2
step03.14494.14494.2	2.8249	0.4029	1870.383	1869.1129	1	1017.4	55.9%	1	K.SKPGAAMVEMADGYAVDR.A	2 2
step03.8162.8162.2	2.373	0.2488	1884.834	1885.1123	2	210.9	44.1%	1	K.SKPGAAMVEM*ADGYAVDR.A	2 2
step06.18751.18751.2	3.9637	0.4551	1635.514	1635.8716	1	1236.6	76.9%	2	R.AITHLNNNFMFGQK.L	2 2
step02.14055.14055.2	2.8043	0.4031	1223.521	1223.3142	1	1180.9	75.0%	2	R.SSSGLLEWESK.S	2 2

Similarities: gi|52632383|ref|NP_00(5:0)

U	gi\|4506063\|ref\|NP_002	3	5	12.3%	381	42982	5.3	cAMP-dependent protein kinase type I-alpha regulatory subunit [Homo sapiens]
U	gi\|47132583\|ref\|NP_99	3	5	12.3%	381	42982	5.3	cAMP-dependent protein kinase type I-alpha regulatory subunit [Homo sapiens]
U	gi\|47132581\|ref\|NP_99	3	5	12.3%	381	42982	5.3	cAMP-dependent protein kinase type I-alpha regulatory subunit [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.6135.6135.2	2.8504	0.3471	2058.448	2058.1292	1	480.4	54.9%	1	R.TDSREDEIS#PPPPNPVVK.G	2
step03.16986.16986.2	3.4463	0.4004	1475.852	1475.6714	1	1011.8	77.3%	2	K.VSILESLDKWER.L	2
step02.15818.15818.2	3.9777	0.4413	1860.242	1861.0422	1	918.7	68.8%	2	R.LTVADALEPVQFEDGQK.I	2

U	gi\|153791632\|ref\|NP_0	2	3	12.3%	154	16773	5.0	eukaryotic translation initiation factor 5A-1-like [Homo sapiens]
U	gi\|9966867\|ref\|NP_065	2	3	12.4%	153	16793	5.6	eukaryotic translation initiation factor 5A-2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14560.14560.1	1.8372	0.2157	776.57	776.9462	3	325.8	75.0%	1	K.NGFVVLK.G	1 1
	step06.19769.19769.2	3.5356	0.4589	1299.047	1299.5433	1	1621.8	90.9%	2	K.VHLVGIDIFTGK.K	2 2

Similarities: gi|219555707|ref|NP_0(2:0)

gi|5174449|ref|NP_006

12.2%

213

22487

10.8

histone H1x [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18022.18022.2	2.8882	0.2287	1374.66	1375.5168	1	517.4	70.0%	2	K.KVPWFDQQNGR.T	2
*	step06.13154.13154.2	3.0191	0.4497	1332.258	1332.4902	1	532.6	60.7%	2	R.GAPAAATAPAPTAHK.A	2

U	gi\|212274337\|ref\|NP_0	4	10	12.0%	399	45283	7.8	lanC-like protein 1 [Homo sapiens]
U	gi\|5174445\|ref\|NP_006	4	10	12.0%	399	45283	7.8	lanC-like protein 1 [Homo sapiens]
U	gi\|212274477\|ref\|NP_0	4	10	12.0%	399	45283	7.8	lanC-like protein 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.12648.12648.2	3.6737	0.4804	1257.229	1257.3339	1	1360.5	81.8%	2	K.SLAEGYFDAAGR.L	2
step05.17175.17175.3	4.8443	0.4868	2509.768	2509.7944	1	1389.6	40.5%	2	K.IPQSHIQQICETILTSGENLAR.K	3
step05.17182.17182.2	5.5763	0.5545	2509.881	2509.7944	1	2233.2	59.5%	2	K.IPQSHIQQICETILTSGENLAR.K	2
step04.12692.12692.2	4.1286	0.5123	1594.602	1594.7031	1	917.3	76.9%	4	K.FPSGNYPPCIGDNR.D	2

gi|4507129|ref|NP_003

12.0%

10804

9.4

small nuclear ribonucleoprotein E [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19990.19990.2	3.2179	0.4524	1330.554	1330.6671	1	636.5	75.0%	2	K.VMVQPINLIFR.Y	2
*	step06.19516.19516.2	3.4018	0.5077	1346.337	1346.6665	1	1071.5	90.0%	4	K.VM*VQPINLIFR.Y	2

U	gi\|161169023\|ref\|NP_0	9	14	11.9%	1087	121000	5.1	transcription elongation factor SPT5 isoform a [Homo sapiens]
U	gi\|20149524\|ref\|NP_00	9	14	11.9%	1087	121000	5.1	transcription elongation factor SPT5 isoform a [Homo sapiens]
U	gi\|195546902\|ref\|NP_0	9	14	11.9%	1083	120499	5.1	transcription elongation factor SPT5 isoform b [Homo sapiens]
U	gi\|195546900\|ref\|NP_0	9	14	11.9%	1087	121000	5.1	transcription elongation factor SPT5 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.19158.19158.2	4.4427	0.4736	1814.126	1814.1167	1	2215.7	82.1%	2	R.KFIAYQFTDTPLQIK.S	2
step02.17435.17435.2	3.1186	0.3814	1969.678	1970.0856	1	545.2	50.0%	1	R.SLGGDVASDGDFLIFEGNR.Y	2
step03.16664.16665.2	2.7285	0.2749	1972.724	1972.2113	1	620.9	50.0%	1	K.HEDLKDMLEFPAQELR.K	2
step03.19484.19484.2	4.2466	0.3976	2181.706	2181.494	1	702.6	52.9%	2	R.VEENFVILFSDLTM*HELK.V	2
step03.14209.14209.2	3.5241	0.4163	1686.325	1685.8622	1	1239.2	75.0%	1	R.FAVALDSEQNNIHVK.D	2
step03.11258.11258.2	3.3241	0.4843	1644.739	1645.7899	1	855.1	69.2%	2	R.VELHSTCQTISVDR.Q	2
step04.12183.12183.2	3.7354	0.5915	1720.471	1720.9088	1	908.2	70.0%	2	R.TPMYGSQTPMYGSGSR.T	2
step04.10749.10749.2	2.7774	0.4386	1736.474	1736.9082	1	583.6	53.3%	2	R.TPMYGSQTPM*YGSGSR.T	2
step03.14091.14091.2	2.7389	0.4003	1737.845	1737.9753	1	693.6	53.3%	1	K.VVSISSEHLEPITPTK.N	2

U	gi\|21626466\|ref\|NP_06	7	12	11.9%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]
U	gi\|62750354\|ref\|NP_95	7	12	11.9%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]
U	gi\|303227926\|ref\|NP_0	7	12	11.9%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]
U	gi\|303227924\|ref\|NP_0	7	12	11.9%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17961.17961.2	5.5164	0.5575	1794.57	1793.916	1	2116.7	64.7%	2	R.GDADQASNILASFGLSAR.D	2
step03.18457.18457.3	5.9091	0.3811	3082.096	3082.4937	1	1546.4	36.0%	2	R.DLDELSRYPEDKITPENLPQILLQLK.R	3
step05.18632.18632.2	3.5185	0.3495	1621.751	1620.9579	1	458.8	76.9%	1	K.ITPENLPQILLQLK.R	2
step05.15537.15538.2	2.7885	0.2264	1779.846	1779.974	1	332.5	62.5%	2	R.GAPPSSNIEDFHGLLPK.G	2
step05.15179.15179.2	2.2145	0.2453	1145.422	1145.3596	1	550.9	75.0%	1	R.VVHIMDFQR.G	2 2
step05.16330.16330.2	4.6896	0.4006	1971.645	1970.2998	1	562.0	55.9%	3	R.IGPYQPNVPVGIDYVIPK.T	2 2
step02.14603.14603.2	3.7474	0.0969	1575.552	1574.75	1	1205.4	75.0%	1	K.LCSLFYTNEEVAK.N	2 2

Similarities: gi|303227928|ref|NP_0(3:4)

U	gi\|14141152\|ref\|NP_00	9	16	11.9%	730	77516	8.7	heterogeneous nuclear ribonucleoprotein M isoform a [Homo sapiens]
U	gi\|157412270\|ref\|NP_1	9	16	12.6%	691	73621	8.8	heterogeneous nuclear ribonucleoprotein M isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15365.15365.2	2.7509	0.4133	1427.262	1427.6267	1	913.2	70.8%	1	R.LGSTVFVANLDYK.V	2
step06.19412.19412.2	5.7271	0.5639	2179.759	2179.573	1	1120.5	59.1%	2	K.GIGMGNIGPAGMGMEGIGFGINK.M	2
step06.18884.18884.2	6.0155	0.2535	2196.478	2195.5725	1	1390.0	59.1%	4	K.GIGM*GNIGPAGMGMEGIGFGINK.M	2
step02.14072.14072.2	2.8441	0.2882	1115.617	1115.3052	1	1395.0	88.9%	2	R.INEILSNALK.R	2
step05.15618.15618.2	4.1232	0.5694	1614.671	1614.8724	1	2223.0	85.7%	1	R.MGPLGLDHMASSIER.M	2
step03.11460.11460.2	2.8706	0.3945	1158.299	1158.3339	1	1553.9	95.0%	2	R.MGAGMGFGLER.M	2
step05.14283.14283.2	2.3002	0.2912	1428.727	1428.7064	1	1154.3	71.4%	1	R.MGPAMGPALGAGIER.M	2
step05.12857.12857.2	2.6391	0.1026	1445.771	1444.7058	1	867.2	60.7%	1	R.MGPAM*GPALGAGIER.M	2
step05.12038.12038.2	3.599	0.4701	1460.239	1460.7052	1	1058.0	75.0%	2	R.MGPAMGPALGAGIER.M	2

U	gi\|41393554\|ref\|NP_95	3	4	11.9%	371	43728	9.9	putative RNA-binding protein Luc7-like 1 isoform b [Homo sapiens]
U	gi\|8922297\|ref\|NP_060	3	4	13.5%	325	38405	10.0	putative RNA-binding protein Luc7-like 1 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.13312.13312.2	2.8396	0.4716	1205.777	1205.4102	1	1192.8	85.0%	1	R.ALLDQLM*GTAR.D	2
step06.17755.17755.2	5.1466	0.1074	1866.603	1866.0554	2	1815.3	76.7%	1	K.SHLLDCCPHDILAGTR.M	2
step03.14066.14066.2	2.9304	0.1937	2064.543	2065.2202	1	414.7	46.9%	2	R.VCEVCSAYLGLHDNDRR.L	2 2

Similarities: gi|116812577|ref|NP_0(1:2)

U	gi\|151301219\|ref\|NP_9	3	5	11.9%	353	40548	5.5	protein arginine N-methyltransferase 1 isoform 3 [Homo sapiens]
U	gi\|154759421\|ref\|NP_0	3	5	11.3%	371	42462	5.3	protein arginine N-methyltransferase 1 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.13689.13689.2	2.9802	0.4418	1252.578	1252.3987	1	1614.9	80.0%	2	R.ATLYVTAIEDR.Q	2
step04.14875.14875.2	3.0222	0.2749	1725.733	1725.8385	1	577.0	60.7%	2	R.TGFSTSPESPYTHWK.Q	2
step04.14992.14992.2	3.3262	0.3961	1737.746	1737.9589	1	330.5	53.3%	1	K.TGEEIFGTIGM*RPNAK.N	2

gi|49472822|ref|NP_00

11.9%

320

35611

6.1

eukaryotic translation initiation factor 3 subunit G [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12203.12203.2	3.887	0.3851	1375.423	1375.507	1	1098.3	75.0%	1	K.ELAEQLGLSTGEK.E	2
*	step03.15183.15183.3	5.6991	0.4828	3139.081	3138.4727	1	1594.9	34.8%	2	K.ELAEQLGLSTGEKEKLPGELEPVQATQNK.T	3
*	step03.8156.8156.2	2.6676	0.2823	1781.732	1781.9883	1	629.7	70.0%	2	K.EKLPGELEPVQATQNK.T	2
*	step06.19661.19661.2	2.5681	0.2975	1082.441	1082.2386	1	908.8	81.2%	2	K.GFAFISFHR.R	2

U	gi\|195539337\|ref\|NP_0	7	9	11.8%	610	66593	7.4	putative adenosylhomocysteinase 3 isoform b [Homo sapiens]
U	gi\|298286489\|ref\|NP_0	7	9	14.2%	508	56697	8.1	putative adenosylhomocysteinase 3 isoform c [Homo sapiens]
U	gi\|24308043\|ref\|NP_05	7	9	11.8%	611	66721	7.4	putative adenosylhomocysteinase 3 isoform a [Homo sapiens]
U	gi\|195539349\|ref\|NP_0	7	9	14.2%	508	56944	7.1	putative adenosylhomocysteinase 3 isoform d [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17523.17523.2	2.4669	0.2347	1715.921	1715.7509	1	982.9	83.3%	1	K.GESEDDFWWCIDR.C	2 2
step03.12606.12606.2	2.3689	0.2472	1283.466	1283.416	1	484.8	77.3%	1	K.GIVEESVTGVHR.L	2 2
step03.13506.13506.2	2.8375	0.1891	1549.348	1548.7808	1	836.3	84.6%	1	K.LCVPAMNVNDSVTK.Q	2 2
step03.10356.10356.2	3.8824	0.4563	1564.889	1564.7802	1	827.0	84.6%	2	K.LCVPAM*NVNDSVTK.Q	2 2
step05.14670.14670.2	2.6111	0.3214	1537.48	1537.7045	1	306.9	50.0%	1	R.SQVDHVIWPDGKR.I	2 2
step05.14409.14409.2	2.6168	0.1385	1267.658	1267.498	8	554.4	66.7%	2	R.YKQDVYLLPK.K	2 2
step06.16717.16717.2	2.4704	0.3029	1256.597	1256.3939	5	266.5	66.7%	1	K.NGPFKPNYYR.Y	2 2

Similarities: gi|21361647|ref|NP_00(7:0)

gi|15208660|ref|NP_00

475

54170

6.4

E3 ubiquitin-protein ligase TRIM21 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13247.13247.2	2.8495	0.46	2281.315	2282.4785	1	734.9	52.8%	2	K.HRDHAMVPLEEAAQEYQEK.L	2
*	step02.14363.14363.2	4.7206	0.3421	1989.779	1989.1523	1	1123.9	75.0%	4	R.DHAMVPLEEAAQEYQEK.L	2
*	step03.14612.14612.2	3.484	0.2313	999.578	999.18933	1	914.6	87.5%	2	K.LQVALGELR.R	2
*	step02.18720.18720.2	5.283	0.4951	1943.015	1943.148	1	1637.3	68.8%	2	K.LAQQSQALQELISELDR.R	2
*	step06.21199.21199.2	2.4465	0.0882	1439.095	1438.6561	2	502.9	60.0%	1	K.SGFWTIWLWNK.Q	2

gi|48526509|ref|NP_00

456

50465

9.4

mitochondrial import inner membrane translocase subunit TIM50 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16646.16646.2	5.5557	0.4331	1913.875	1913.1204	1	1123.1	70.0%	3	K.IPDEFDNDPILVQQLR.R	2
*	step03.18338.18338.2	3.0329	0.3825	1119.718	1119.3785	1	641.1	83.3%	2	R.VLLDLSAFLK.T	2
*	step02.8952.8952.2	3.5657	0.354	1187.388	1187.3282	1	1406.9	90.0%	1	K.TIALNGVEDVR.T	2
*	step03.16945.16945.2	5.6059	0.5237	1933.805	1933.15	1	2198.8	78.1%	2	R.TVLEHYALEDDPLAAFK.Q	2

gi|310114173|ref|XP_0

331

36183

8.7

PREDICTED: anaphase-promoting complex subunit 1-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.20094.20094.3	3.9419	0.4067	3135.517	3136.5698	31	545.6	26.9%	2	K.IVFLNTDPSIVM*TYDAVQNVHSVWTLR.R	3 3 3
step04.13710.13710.1	2.2597	0.1677	1233.63	1234.4083	2	135.0	50.0%	2	R.SPSISNMAALSR.A	1 1 1
step04.13812.13812.2	3.853	0.4219	1234.387	1234.4083	1	1628.7	86.4%	2	R.SPSISNMAALSR.A	2 2 2
step04.10680.10680.2	3.4193	0.3339	1250.385	1250.4077	1	1390.4	81.8%	4	R.SPSISNM*AALSR.A	2 2 2

Similarities: gi|12056971|ref|NP_07(4:0)
gi|310118949|ref|XP_0(4:0)

U	gi\|55749557\|ref\|NP_00	2	4	11.8%	313	34628	7.8	E3 ubiquitin-protein ligase SIAH1 isoform b [Homo sapiens]
U	gi\|63148618\|ref\|NP_00	2	4	13.1%	282	31123	6.8	E3 ubiquitin-protein ligase SIAH1 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.12636.12636.2	3.6641	0.2972	1694.2	1693.8297	1	848.5	67.9%	2	K.YASSGCEITLPHTEK.A	2
	step03.13988.13988.3	4.6401	0.405	2671.719	2671.8315	1	1535.1	42.9%	2	K.ADHEELCEFRPYSCPCPGASCK.W	3

gi|21281679|ref|NP_64

304

32646

5.2

protein phosphatase PTC7 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.20277.20277.2	3.6617	0.3455	2396.029	2395.7297	1	498.5	47.5%	1	R.FVPSNPIGILTTSYCELLQNK.V	2
*	step05.16030.16030.2	3.7931	0.5276	1599.521	1599.8157	1	1338.4	85.7%	1	R.LHTANLGDSGFLVVR.G	2

gi|50053872|ref|NP_94

246

28661

10.5

60S ribosomal protein L7-like 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13764.13764.2	2.4906	0.0975	1838.554	1837.971	18	257.7	28.6%	1	K.IFS#GVFVKVT#PQNLK.M	2
*	step04.17670.17670.2	3.9936	0.335	1664.03	1663.9398	1	1178.8	73.1%	1	R.IVEPYVTWGFPNLK.S	2

gi|55741849|ref|NP_00

942

103963

5.8

DDB1- and CUL4-associated factor 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15435.15435.1	1.9844	0.2016	992.721	993.14166	2	226.9	62.5%	2	R.SVVGFLSQR.G	1
*	step04.15415.15415.2	2.9001	0.3348	993.366	993.14166	1	1117.7	87.5%	2	R.SVVGFLSQR.G	2
*	step04.15379.15379.2	2.803	0.422	1597.528	1597.7567	1	928.9	73.1%	2	R.GLHGDPLLTQDFQR.R	2
*	step06.20143.20143.2	3.0038	0.3477	2033.555	2034.1713	1	547.2	47.1%	2	K.GEHHSNIFCLAFNSGNTK.V	2
*	step03.16696.16696.2	2.3543	0.2364	915.165	915.1141	1	599.0	91.7%	1	R.VLIWDIR.E	2
*	step02.16616.16616.2	2.4618	0.2564	1045.404	1045.1735	1	956.5	93.8%	1	K.EGVGLWDIR.K	2
*	step04.16838.16838.2	5.5702	0.567	2197.454	2197.4487	1	2128.9	70.6%	2	R.LPVFQFDNQGYFNSCTMK.S	2
*	step04.16496.16496.2	4.8776	0.5064	2212.67	2213.448	1	1771.7	73.5%	2	R.LPVFQFDNQGYFNSCTM*K.S	2
*	step04.15787.15787.2	2.7507	0.3124	1078.398	1078.3531	1	585.9	77.8%	1	R.VVNGAFMVLK.G	2
*	step05.14609.14609.2	3.6936	0.4901	1770.443	1770.9808	1	998.4	75.0%	1	R.FNPHTYMICSSGVEK.I	2
*	step03.17716.17716.2	3.2543	0.5758	1217.367	1217.4861	1	1247.4	94.4%	3	R.MMAFFDSLVR.R	2

gi|7661920|ref|NP_055

411

46871

6.7

eukaryotic initiation factor 4A-III [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15044.15044.2	5.1102	0.5122	1828.739	1829.0483	1	1396.1	80.0%	2	R.GIYAYGFEKPSAIQQR.A	2 2 2
*	step02.8412.8412.2	2.6984	0.1812	1553.346	1553.7809	1	1434.2	83.3%	1	K.MLVLDEADEMLNK.G	2
*	step02.17981.17981.2	5.0238	0.4712	2141.708	2141.4128	1	1978.4	69.4%	1	R.GLDVPQVSLIINYDLPNNR.E	2

Similarities: gi|4503529|ref|NP_001(1:2)
gi|83700235|ref|NP_00(1:2)

gi|5174613|ref|NP_005

375

42823

4.7

nucleosome assembly protein 1-like 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.20841.20841.2	2.9951	0.3249	1413.374	1413.6466	1	284.9	70.0%	2	K.GIPEFWFTIFR.N	2
*	step02.19024.19024.2	5.3409	0.3819	2136.705	2136.4084	1	1512.6	67.6%	2	R.NVDMLSELVQEYDEPILK.H	2
*	step04.19021.19021.2	3.9171	0.4173	1829.208	1829.0468	1	604.2	67.9%	2	K.QVPNESFFNFFNPLK.A	2

gi|5031569|ref|NP_005

376

42614

6.6

alpha-centractin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.17918.17918.2	2.6737	0.2817	1401.464	1401.5876	1	885.9	75.0%	1	K.YCFPNYVGRPK.H	2
*	step02.15738.15738.2	3.9533	0.4461	1868.782	1868.0365	1	872.8	65.6%	1	K.AQYYLPDGSTIEIGPSR.F	2
*	step05.18838.18838.2	5.4332	0.5692	1686.046	1684.9573	1	2569.9	80.0%	4	R.TLFSNIVLSGGSTLFK.G	2

U	gi\|4501881\|ref\|NP_001	5	19	11.7%	377	42051	5.4	actin, alpha skeletal muscle [Homo sapiens]
U	gi\|4885049\|ref\|NP_005	5	19	11.7%	377	42019	5.4	actin, alpha cardiac muscle 1 proprotein [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15010.15010.2	2.246	0.4034	946.346	946.1282	1	814.4	87.5%	1	R.AVFPSIVGR.P	2 2 2 2 2
step03.15469.15469.2	3.3647	0.3517	1961.734	1962.1718	1	1300.7	63.3%	2	K.YPIEHGIITNWDDMEK.I	2 2
step03.14738.14738.2	3.1797	0.317	1978.724	1978.1711	1	319.8	53.3%	3	K.YPIEHGIITNWDDM*EK.I	2 2
step06.26382.26382.2	3.2223	0.3938	1516.338	1516.6869	1	975.8	85.0%	12	K.IWHHTFYNELR.V	2 2 2 2 2
step02.11756.11756.2	2.6918	0.2741	1015.309	1015.16266	1	313.3	85.7%	1	R.DLTDYLM*K.I	2 2 2

U	gi\|75709200\|ref\|NP_00	3	5	11.7%	197	22025	8.4	phospholipid hydroperoxide glutathione peroxidase, mitochondrial isoform A precursor [Homo sapiens]
U	gi\|90903240\|ref\|NP_00	3	5	9.8%	234	26948	10.1	phospholipid hydroperoxide glutathione peroxidase, mitochondrial isoform C precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15344.15344.2	2.3863	0.3677	1295.39	1295.505	1	860.3	85.0%	2	R.ILAFPCNQFGK.Q	2
step02.14276.14276.2	2.3751	0.1959	1405.66	1405.6414	3	474.1	63.6%	1	R.YGPMEEPLVIEK.D	2
step02.9051.9051.2	3.1554	0.3406	1421.492	1421.6407	1	1234.5	90.9%	2	R.YGPM*EEPLVIEK.D	2

gi|122937227|ref|NP_0

11.6%

1029

118292

8.5

U2-associated protein SR140 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.9417.9417.2	3.2185	0.0921	1670.452	1669.6278	10	553.2	35.7%	1	-.M*ADKTPGGSQKAS#S#K.T	2
*	step04.15117.15117.2	2.342	0.2576	2237.261	2238.4373	66	126.5	30.6%	1	R.ESLCDSPHQNLSRPLLENK.L	2
*	step06.17618.17618.2	3.972	0.4444	2220.674	2221.4563	1	493.5	47.4%	1	K.NPPNQSSNERPPSLLVIETK.K	2
*	step04.15693.15693.2	3.0689	0.4605	1216.203	1216.3882	1	1300.1	83.3%	1	R.NCGFVAFMNR.R	2
*	step05.16102.16102.2	4.4129	0.4585	1786.327	1785.9819	1	946.8	73.1%	2	R.FLFENQTPAHVYYR.W	2
*	step02.13415.13415.2	2.8656	0.3383	1322.368	1322.4889	1	768.1	68.2%	1	K.LYSILQGDSPTK.W	2
*	step02.17084.17084.2	4.0587	0.41	1572.703	1572.7838	1	1917.5	76.9%	2	R.LYLVSDVLYNSSAK.V	2
*	step04.166.166.2	5.103	0.3572	1743.826	1744.0679	1	2297.9	85.7%	2	K.LQNIFLGLVNIIEEK.E	2

U	gi\|194306567\|ref\|NP_8	2	2	11.6%	319	36105	6.9	replication factor C subunit 5 isoform 2 [Homo sapiens]
U	gi\|6677723\|ref\|NP_031	2	2	10.9%	340	38497	7.2	replication factor C subunit 5 isoform 1 [Homo sapiens]
U	gi\|194306571\|ref\|NP_0	2	2	11.6%	319	36105	6.9	replication factor C subunit 5 isoform 2 [Homo sapiens]
U	gi\|194306569\|ref\|NP_0	2	2	14.5%	255	28846	6.5	replication factor C subunit 5 isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14986.14986.2	2.966	0.1558	2103.863	2104.3281	2	449.1	44.4%	1	K.LVILDEADAM*TQDAQNALR.R	2
	step04.6813.6813.2	2.2655	0.1568	2088.313	2087.2942	18	221.4	35.3%	1	R.LEHVVEEEKVDISEDGMK.A	2

gi|4506127|ref|NP_002

11.6%

318

34834

7.0

ribose-phosphate pyrophosphokinase 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14781.14781.2	2.4448	0.0988	2269.451	2269.3892	107	111.1	25.0%	1	R.NCTIVSPDAGGAKRVTS#IADR.L	2
	step04.17686.17686.2	2.5684	0.4237	1787.5	1787.953	1	481.8	60.0%	1	R.THNGESVSYLFSHVPL.-	2

gi|169164061|ref|XP_0

11.6%

275

31007

5.1

PREDICTED: anaphase-promoting complex subunit 1-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.19150.19150.2	3.919	0.4504	1555.867	1555.8428	1	1301.1	84.6%	2	R.DLETLPFGIALPIR.D	2 2 2
	step02.15371.15371.2	4.4606	0.5313	2175.658	2176.3677	1	1135.3	70.6%	2	R.VNVVQYPELSDHEFIEEK.E	2 2 2 2

Similarities: gi|12056971|ref|NP_07(2:0)
gi|310118953|ref|XP_0(1:1)
gi|310118949|ref|XP_0(2:0)

gi|197333755|ref|NP_0

11.5%

506

54814

7.9

interferon-related developmental regulator 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19215.19215.2	3.117	0.3548	2725.605	2726.035	1	335.4	30.0%	2	K.GEELFHSLQPLLVSVLSDSTASPAAR.L	2
*	step03.20308.20308.2	3.8724	0.4522	1589.067	1588.8727	1	1445.1	71.4%	1	R.IAAGETIALLFELAR.D	2
*	step03.221.221.2	6.3559	0.4589	1757.728	1757.1066	1	2304.9	84.4%	2	R.DIFGLGPVLLLDATALK.A	2

U	gi\|13514809\|ref\|NP_00	6	9	11.4%	660	73154	7.6	ATP-dependent RNA helicase DDX3Y [Homo sapiens]
U	gi\|169881239\|ref\|NP_0	6	9	11.4%	660	73154	7.6	ATP-dependent RNA helicase DDX3Y [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15052.15052.2	4.2859	0.434	1883.786	1884.0359	1	2442.0	81.2%	1	R.LEQELFSGGNTGINFEK.Y	2 2
step06.16807.16807.2	4.0156	0.4506	1890.073	1889.1418	1	653.5	62.5%	2	R.VRPCVVYGGADIGQQIR.D	2 2
step06.17203.17203.2	2.4978	0.5184	1181.051	1181.3635	1	985.4	70.0%	1	R.GCHLLVATPGR.L	2 2
step02.9101.9101.2	2.4488	0.2292	1094.53	1094.1996	1	1012.5	93.8%	1	K.YLVLDEADR.M	2 2
step02.16050.16050.2	3.4512	0.5056	1337.591	1337.5938	1	1911.2	90.0%	2	R.MLDMGFEPQIR.R	2 2 2 2
step02.19040.19040.2	3.5201	0.4291	1129.471	1129.3286	1	1511.4	83.3%	2	K.DLLDLLVEAK.Q	2 2

Similarities: gi|301171467|ref|NP_0(6:0)
gi|4758138|ref|NP_004(1:5)
gi|148613856|ref|NP_0(1:5)

gi|56549656|ref|NP_00

11.4%

343

37048

5.1

hypothetical protein LOC147339 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.19190.19190.2	5.2357	0.568	2194.749	2195.5376	1	1169.7	57.9%	2	K.DGVADSTVISSMPCLLMELR.R	2 2
	step02.19217.19217.3	4.7641	0.4101	2194.942	2195.5376	1	1796.3	48.7%	1	K.DGVADSTVISSMPCLLMELR.R	3 3
*	step03.15649.15649.2	4.2278	0.4503	1983.781	1983.2106	1	1182.5	72.2%	2	K.TITAEIPGHLDPGFLASDK.T	2

Similarities: gi|21450814|ref|NP_65(2:1)

gi|19923973|ref|NP_61

11.4%

325

35701

5.6

BTB/POZ domain-containing protein KCTD12 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11180.11180.2	4.4142	0.4449	1478.332	1477.6709	1	1136.8	86.4%	2	R.MFTQQQPQELAR.D	2
*	step02.18065.18065.2	2.3505	0.2171	1605.745	1605.8154	1	789.8	62.5%	1	R.DLQLVLPDYFPER.S	2
*	step02.17716.17716.2	4.0426	0.3934	1496.612	1495.658	1	1052.6	77.3%	2	R.EAEYFELPELVR.R	2

gi|110618253|ref|NP_0

11.3%

1230

138620

9.0

DNA-directed RNA polymerase, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17739.17739.2	2.8393	0.1051	1665.192	1665.8741	13	586.9	50.0%	1	K.DWGHVELLEVLQAR.V	2
*	step03.12843.12843.3	4.2032	0.3633	2594.124	2593.752	1	1195.2	33.7%	1	K.LSLDVEQAPSGQHSQAQLSGQQQR.L	3
*	step06.16368.16368.2	3.5268	0.3218	1543.534	1543.8237	1	1803.2	76.9%	2	R.VCVVSVEKPTLPSK.E	2
*	step04.20568.20568.2	4.2249	0.5211	1673.52	1673.9264	1	640.2	75.0%	4	R.FSLYPFLCLLDER.E	2
*	step05.17610.17610.2	6.177	0.5757	2305.225	2304.695	1	1034.4	67.5%	2	R.M*LLQVLQALPAQGESFTTLAR.E	2
*	step04.19537.19537.2	3.9851	0.5303	1387.795	1387.692	1	2039.0	86.4%	4	R.VLDLVLQLFQAK.G	2
*	step02.20516.20516.2	4.8412	0.4701	2406.839	2407.6394	1	989.7	52.4%	2	R.LAFAEEVMDDILDSADQPLTGR.K	2
*	step03.19597.19597.2	3.0587	0.3788	2353.847	2353.5735	1	506.9	47.2%	2	R.ELSDFPQEFVWEASHYLVR.Q	2

U	gi\|207029415\|ref\|NP_0	3	4	11.3%	424	47585	4.9	histone-binding protein RBBP4 isoform b [Homo sapiens]
U	gi\|5032027\|ref\|NP_005	3	4	11.3%	425	47656	4.9	histone-binding protein RBBP4 isoform a [Homo sapiens]
U	gi\|207029439\|ref\|NP_0	3	4	12.3%	390	43482	5.0	histone-binding protein RBBP4 isoform c [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15034.15034.2	3.9907	0.4984	1472.502	1472.6211	1	1962.4	83.3%	2	K.TPSSDVLVFDYTK.H	2 2
step03.16099.16099.2	2.2193	0.2704	974.246	974.13837	1	515.2	78.6%	1	K.TVALWDLR.N	2 2
step03.15910.15910.3	4.5781	0.3099	2875.369	2875.053	4	536.2	26.9%	1	K.IGEEQSPEDAEDGPPELLFIHGGHTAK.I	3

Similarities: gi|4506439|ref|NP_002(2:1)

gi|6857820|ref|NP_005

11.3%

406

46225

7.0

phosphatidylinositol-5-phosphate 4-kinase type-2 alpha [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15346.15346.2	2.2628	0.1473	2068.332	2068.17	120	128.0	26.4%	1	-.M*AT#PGNLGS#SVLASKTKTK.K	2
	step03.11769.11769.2	2.7972	0.2406	1787.803	1788.8962	68	127.7	40.6%	1	K.HGAGAEISTVNPEQYSK.R	2
*	step04.18824.18824.2	2.3358	0.3719	1176.311	1176.3887	1	536.7	77.8%	1	R.FLDFIGHILT.-	2

U	gi\|155969697\|ref\|NP_7	4	6	11.2%	564	60025	8.0	keratin, type II cytoskeletal 6C [Homo sapiens]
U	gi\|27465517\|ref\|NP_77	4	6	11.2%	564	60223	8.0	keratin 6 isoform K6e [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.11497.11497.2	2.7779	0.4224	1425.354	1425.4828	1	968.3	62.5%	1	R.GSGGLGGACGGAGFGSR.S	2 2 2 2
step04.12933.12933.2	4.1704	0.5749	1599.179	1599.7212	1	1253.7	68.8%	2	R.ISIGGGSCAISGGYGSR.A	2 2 2 2
step02.18066.18066.1	2.2392	0.09	1329.837	1330.5093	1	555.3	72.7%	1	R.NLDLDSIIAEVK.A	1 1 1 1 1 1 1 1
step04.12796.12796.2	4.7653	0.5287	1448.481	1448.6044	1	1559.0	81.2%	2	R.AIGGGLSSVGGGSSTIK.Y	2 2

gi|55770868|ref|NP_06

11.1%

434

48488

5.3

putative tubulin beta-4q chain [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15297.15297.2	4.9629	0.5037	1603.704	1602.835	1	1478.3	82.1%	4	R.AVLVDLEPGTMDSVR.S	2 2 2 2 2
2	step06.19010.19010.3	6.7555	0.5846	3442.667	3441.7993	1	3270.6	35.9%	4	R.KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISK.I	3 3 3 3 3 3 3
2	step03.16218.16218.3	7.1499	0.5735	3314.09	3313.6262	1	2606.3	34.7%	5	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLISK.I	3 3 3 3 3 3 3

gi|4503771|ref|NP_002

11.1%

379

44409

5.1

protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19538.19538.3	4.4778	0.3382	2047.723	2047.2083	1	1997.5	50.0%	2	R.DPSQELEFIADILNQDAK.N	3
*	step02.19067.19067.2	4.0862	0.3431	1777.106	1777.998	1	1433.0	73.1%	1	K.LWDNELQYVDQLLK.E	2
*	step02.17048.17048.2	3.3926	0.4497	1160.568	1160.3793	1	1267.5	83.3%	2	K.ALELCEILAK.E	2

U	gi\|16554627\|ref\|NP_06	3	4	11.1%	334	36589	8.3	WD repeat-containing protein 5 [Homo sapiens]
U	gi\|16554629\|ref\|NP_43	3	4	11.1%	334	36589	8.3	WD repeat-containing protein 5 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.8712.8712.2	3.389	0.4663	1279.43	1279.4176	1	1443.2	90.0%	2	R.IWDTASGQCLK.T	2
step02.14433.14433.2	2.5743	0.3202	1560.318	1560.7299	1	842.7	65.4%	1	K.TLIDDDNPPVSFVK.F	2
step02.16710.16710.2	3.1271	0.3884	1336.857	1336.5587	1	1638.0	90.9%	1	K.YILAATLDNTLK.L	2

gi|27735107|ref|NP_77

11.1%

189

21433

7.8

dnaJ homolog subfamily C member 5G [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14936.14936.2	2.5495	0.1195	1107.401	1107.2416	1	626.4	77.8%	2	K.KGASPEDFKK.S	2
*	step03.11816.11816.2	2.8034	0.1473	1505.995	1505.4056	1	321.5	47.5%	2	K.Y#QQNVQS#QPPR.S	2

U	gi\|217272892\|ref\|NP_0	7	9	11.0%	972	109436	5.0	116 kDa U5 small nuclear ribonucleoprotein component isoform a [Homo sapiens]
U	gi\|217272894\|ref\|NP_0	7	9	11.4%	937	105384	5.2	116 kDa U5 small nuclear ribonucleoprotein component isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.506.506.2	3.4517	0.251	2251.728	2250.5579	5	197.3	30.0%	1	R.ISDGVVLFIDAAEGVMLNTER.L	2
step03.19286.19286.2	2.6434	0.2198	1485.988	1485.7478	1	956.5	72.7%	1	R.SFVEFILEPLYK.I	2
step03.13153.13153.2	2.9316	0.2659	1393.714	1393.6102	1	639.2	66.7%	1	K.IAVEPVNPSELPK.M	2
step02.19509.19509.2	4.9678	0.5098	1987.766	1987.1593	1	1982.9	71.9%	2	K.GLAEDIENEVVQITWNR.K	2
step04.11439.11439.2	2.4553	0.2173	970.468	970.1081	1	686.0	72.2%	1	R.GGGQIIPTAR.R	2 2
step06.17509.17509.2	5.1926	0.5177	1895.014	1895.1482	1	2410.0	85.3%	2	R.GHVTQDAPIPGSPLYTIK.A	2
step02.18694.18694.2	4.5119	0.5102	1800.566	1800.0037	1	780.0	73.3%	1	K.AFIPAIDSFGFETDLR.T	2

Similarities: gi|4503483|ref|NP_001(1:6)

U	gi\|294774574\|ref\|NP_0	5	13	11.0%	556	61314	4.9	serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform d [Homo sapiens]
U	gi\|32455246\|ref\|NP_00	5	13	10.1%	601	66214	4.9	serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform a [Homo sapiens]
U	gi\|32455244\|ref\|NP_85	5	13	9.1%	667	73585	5.1	serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.19440.19440.2	4.0177	0.4745	1371.93	1371.651	1	2213.2	91.7%	2	K.KLSTIALALGVER.T	2 2 2
step03.16293.16293.2	3.724	0.4338	1243.493	1243.478	1	1495.5	90.9%	2	K.LSTIALALGVER.T	2 2 2
step04.15668.15668.2	3.5393	0.4891	1518.121	1518.6831	1	1614.8	79.2%	5	R.TSACGLFSVCYPR.A	2 2 2
step03.17349.17349.2	5.0076	0.3881	1944.164	1943.2277	1	1313.5	59.4%	2	R.LNIISNLDCVNEVIGIR.Q	2 2 2 2
step02.19577.19577.2	4.2503	0.5229	1926.68	1926.2004	1	999.5	67.6%	2	R.QLSQSLLPAIVELAEDAK.W	2 2 2 2

Similarities: gi|21361399|ref|NP_05(5:0)
gi|294774576|ref|NP_0(4:1)
gi|294774572|ref|NP_8(3:2)

gi|20911035|ref|NP_62

11.0%

492

57225

5.9

peptidyl-prolyl cis-trans isomerase-like 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14885.14885.2	2.2003	0.1753	1644.526	1643.8204	1	544.9	63.6%	1	K.YYNYCLIHNVQR.D	2
*	step02.8747.8747.2	3.2027	0.4021	1478.348	1478.589	1	1904.1	88.5%	1	R.DFIIQTGDPTGTGR.G	2
*	step03.18577.18577.3	5.8607	0.5643	3127.779	3127.6345	1	1406.8	35.2%	1	K.TQAILLEMVGDLPDADIKPPENVLFVCK.L	3

gi|11141889|ref|NP_06

11.0%

383

44634

9.1

protein salvador homolog 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18095.18095.2	4.3855	0.4616	2897.877	2897.236	1	785.9	41.7%	2	R.NQSLLVPANPYHTAEIPDWLQVYAR.A	2
*	step02.19137.19137.2	4.9263	0.2407	2089.06	2088.3687	1	1375.1	65.6%	1	K.WELFQLADLDTYQGM*LK.L	2

U	gi\|14141157\|ref\|NP_03	2	3	11.0%	346	36926	6.9	heterogeneous nuclear ribonucleoprotein H3 isoform a [Homo sapiens]
U	gi\|14141159\|ref\|NP_06	2	3	11.5%	331	35239	6.9	heterogeneous nuclear ribonucleoprotein H3 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.18534.18534.2	4.6191	0.3883	1920.703	1920.1146	1	1551.7	68.8%	2	R.ATENDIANFFSPLNPIR.V	2
	step02.14829.14829.2	3.1583	0.2895	2178.223	2179.3503	1	371.7	47.5%	1	R.ATGEADVEFVTHEDAVAAMSK.D	2

gi|20149594|ref|NP_03

10.9%

724

83264

5.0

heat shock protein HSP 90-beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14843.14843.2	3.4298	0.3844	1546.567	1545.72	1	640.2	69.2%	1	R.ELISNASDALDKIR.Y	2
*	step06.19994.19994.2	5.1391	0.5631	1810.644	1810.0848	1	988.0	75.0%	2	K.HSQFIGYPITLYLEK.E	2
*	step05.16372.16372.1	2.1438	0.1389	829.717	830.0523	6	593.2	75.0%	1	R.ALLFIPR.R	1
*	step05.16467.16467.2	2.8832	0.1205	1237.827	1237.3889	1	905.0	77.8%	1	R.RAPFDLFENK.K	2
*	step02.19227.19227.2	4.1866	0.5465	2391.914	2391.7183	1	500.4	55.6%	2	R.VFIM*DSCDELIPEYLNFIR.G	2
2	step02.13929.13929.2	4.8973	0.2401	1515.494	1514.6627	1	1634.4	84.6%	4	R.GVVDSEDLPLNISR.E	2 2 2

Similarities: gi|155722983|ref|NP_0(1:5)
gi|153792590|ref|NP_0(1:5)

U	gi\|12711674\|ref\|NP_07	3	4	10.9%	470	56213	9.4	regulator of nonsense transcripts 3B isoform 2 [Homo sapiens]
U	gi\|18375528\|ref\|NP_54	3	4	10.6%	483	57762	9.5	regulator of nonsense transcripts 3B isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.19203.19203.2	2.2787	0.1507	2237.996	2238.187	36	132.2	22.7%	1	K.RVT#LLT#PAGATGSGGGTSGDSSK.G	2
step02.17674.17674.2	2.6246	0.1791	1708.981	1708.9094	1	599.9	60.7%	1	K.M*TSTPETLLEEIEAK.N	2
step06.16255.16255.2	2.6005	0.1288	1503.618	1503.7115	6	300.1	58.3%	2	K.DRPAMQLYQPGAR.S	2

gi|222352111|ref|NP_1

10.9%

293

34222

9.9

MKI67 FHA domain-interacting nucleolar phosphoprotein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.17102.17102.2	3.8804	0.3922	1637.19	1637.9006	1	2108.1	84.6%	2	K.KGIDYDFPSLILQK.T	2
*	step02.13835.13835.2	4.7606	0.4902	2006.973	2006.196	1	1103.6	61.8%	1	K.TVDSQGPTPVCTPTFLER.R	2

gi|6005842|ref|NP_009

10.9%

275

30344

7.5

proline synthase co-transcribed bacterial homolog protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17903.17903.2	3.4939	0.4229	1570.079	1570.7247	1	1556.7	79.2%	2	R.TFGENYVQELLEK.A	2
*	step03.18921.18921.2	2.789	0.1721	1909.141	1908.3152	44	178.9	37.5%	2	K.LMAVPNLFMLETVDSVK.L	2

gi|51173724|ref|NP_00

10.8%

437

49601

8.1

bystin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17777.17777.2	3.5727	0.5688	1546.735	1546.756	1	1109.1	82.1%	2	K.HAPLADQILAGNAVR.A	2
*	step05.17210.17210.2	3.5359	0.2701	1135.441	1135.3828	1	1564.6	93.8%	2	R.FYNLVLLPR.V	2
*	step02.14897.14897.2	3.0409	0.1277	1718.983	1717.9244	1	586.8	64.3%	1	K.IAEM*EYSGANSIFLR.L	2
*	step02.17927.17927.2	2.3234	0.0992	957.291	957.14923	1	726.8	85.7%	1	K.EALLELLR.L	2

U	gi\|291575128\|ref\|NP_0	3	3	10.8%	334	36639	6.1	L-lactate dehydrogenase B chain [Homo sapiens]
U	gi\|4557032\|ref\|NP_002	3	3	10.8%	334	36639	6.1	L-lactate dehydrogenase B chain [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.8667.8667.2	3.0767	0.3127	1695.462	1695.8954	6	390.9	50.0%	1	K.LIAPVAEEEATVPNNK.I	2
step04.12844.12844.2	2.6037	0.2702	914.353	914.1276	1	841.5	93.8%	1	K.IVVVTAGVR.Q	2
step02.14422.14422.2	2.7037	0.1392	1281.586	1281.421	17	252.0	46.7%	1	R.GLTS#VINQKLK.D	2

gi|7705805|ref|NP_057

10.8%

296

33249

9.3

28S ribosomal protein S2, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13536.13536.2	2.4585	0.1706	950.311	950.1168	1	1023.2	92.9%	2	R.LFQTAITR.A	2
*	step06.13260.13260.3	3.9579	0.3927	2455.359	2455.6492	1	1022.5	31.5%	2	R.LQGQKEPGDQGPAHPPGADMSHSL.-	3
*	step06.12820.12820.2	3.4434	0.4518	2472.57	2471.6487	1	189.6	32.6%	3	R.LQGQKEPGDQGPAHPPGADM*SHSL.-	2

U	gi\|298231105\|ref\|NP_0	7	12	10.6%	927	103585	7.0	F-box only protein 11 isoform 4 [Homo sapiens]
U	gi\|30089926\|ref\|NP_07	7	12	11.6%	843	94056	6.9	F-box only protein 11 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17000.17000.2	4.0386	0.4154	1433.145	1433.6329	1	1684.9	81.8%	2	R.FSELANDPILWK.R	2
step04.17092.17092.3	4.8247	0.33	2488.902	2489.7007	1	1068.1	40.0%	1	R.DVGVFTFDHGMGYFESCNIHR.N	3
step03.10137.10137.2	2.8229	0.3804	991.424	991.1258	1	1224.4	93.8%	2	K.AYANPTVVR.C	2
step02.16318.16318.2	2.6595	0.2626	1206.378	1206.33	1	1263.9	83.3%	2	R.GLLEENDIFR.N	2
step06.17802.17802.2	4.8967	0.4338	1791.84	1792.0327	1	1350.1	68.8%	2	R.NAQAGVLISTNSHPILR.K	2
step02.13659.13659.2	2.6905	0.1025	1702.057	1701.7994	6	302.6	41.1%	2	R.FGGLFLAS#GVNVT#MK.D	2
step04.15464.15464.2	2.4843	0.1398	1766.758	1767.942	1	557.8	57.7%	1	K.ISSYTSYPMHDFYR.C	2

gi|122937295|ref|NP_0

10.6%

828

94475

5.4

BEN domain-containing protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17726.17726.2	4.4959	0.3964	1964.83	1964.2073	1	432.5	59.4%	2	K.KNPPSGDLLNVYELFEK.A	2
*	step03.104.104.2	5.0664	0.4352	2025.737	2026.3202	1	1095.8	75.0%	4	R.LLVQLFPELFSDVDFSR.G	2
*	step03.114.114.3	4.8219	0.3739	2025.799	2026.3202	1	1744.0	50.0%	1	R.LLVQLFPELFSDVDFSR.G	3
*	step03.19664.19664.3	4.7559	0.4154	3356.693	3356.8452	1	779.1	32.1%	2	K.IWLVPIDFDKLEIPQPDFEVPGADCLLSK.E	3
*	step02.10558.10558.2	3.6635	0.4516	1279.262	1279.381	1	1312.3	85.0%	2	R.DLTSYAINPER.F	2
*	step03.12112.12112.2	2.3457	0.1893	1701.224	1700.8754	1	993.1	69.2%	1	R.FREEFEGPPLPPER.S	2

gi|186928850|ref|NP_0

10.6%

414

47611

6.2

28S ribosomal protein S27, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19794.19794.2	3.5275	0.3841	1230.593	1230.481	1	2006.6	86.4%	2	R.NFGASLLLPGLK.Q	2
*	step02.17678.17678.2	3.7636	0.4212	1129.73	1128.3438	1	1422.2	90.0%	4	R.EALDVLGAVLK.A	2
*	step02.16199.16199.2	4.8321	0.5389	2561.071	2561.8264	1	1610.5	65.0%	2	K.LVEQLDIEETEQSKLPQYLER.F	2
*	step02.16167.16167.3	5.2001	0.4918	2562.62	2561.8264	1	2134.7	50.0%	2	K.LVEQLDIEETEQSKLPQYLER.F	3
*	step03.12220.12220.2	2.3392	0.2216	919.543	919.0596	5	417.7	83.3%	2	K.LPQYLER.F	2

U	gi\|109389358\|ref\|NP_0	3	5	10.6%	433	47440	8.4	transcription factor AP-2-alpha isoform c [Homo sapiens]
U	gi\|73760407\|ref\|NP_00	3	5	10.7%	431	47183	8.4	transcription factor AP-2-alpha isoform b [Homo sapiens]
U	gi\|4507441\|ref\|NP_003	3	5	10.5%	437	48062	8.0	transcription factor AP-2-alpha isoform a [Homo sapiens]
U	gi\|194353976\|ref\|NP_8	3	5	10.4%	442	46212	8.4	transcription factor AP-2-epsilon [Homo sapiens]
U	gi\|118582289\|ref\|NP_0	3	5	10.0%	460	50474	8.2	transcription factor AP-2-beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17159.17159.2	2.8476	0.2163	1796.461	1797.0826	1	356.5	62.5%	2	R.LSPPECLNASLLGGVLR.R	2 2
2	step05.13866.13866.2	2.514	0.4195	910.773	911.0838	1	949.9	87.5%	1	K.IGLNLPAGR.R	2 2
	step04.18571.18571.3	4.1486	0.3681	2066.324	2065.3596	1	1195.9	42.1%	2	K.AANVTLLTSLVEGEAVHLAR.D	3

Similarities: gi|4507445|ref|NP_003(2:1)

gi|28872740|ref|NP_78

10.6%

161

16904

11.5

28S ribosomal protein S11, mitochondrial isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.16475.16475.2	3.4114	0.4113	1528.348	1528.739	1	1427.3	71.9%	1	K.KGTGIAAQTAGIAAAAR.A	2 2
	step04.12674.12674.2	4.1543	0.4748	1400.786	1400.5662	1	1310.0	70.0%	2	K.GTGIAAQTAGIAAAAR.A	2 2

Similarities: gi|16554609|ref|NP_07(2:0)

U	gi\|4757810\|ref\|NP_004	4	7	10.5%	553	59751	9.1	ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens]
U	gi\|50345984\|ref\|NP_00	4	7	10.5%	553	59751	9.1	ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16430.16430.2	4.9785	0.5781	2121.083	2121.357	1	1014.0	63.2%	1	K.GM*SLNLEPDNVGVVVFGNDK.L	2
step02.16758.16758.2	4.9747	0.4234	1626.774	1625.8483	1	2022.5	83.3%	2	R.TGAIVDVPVGEELLGR.V	2
step02.19557.19557.2	4.3155	0.5026	2338.677	2339.5466	1	2090.0	59.5%	2	R.EVAAFAQFGSDLDAATQQLLSR.G	2
step02.19564.19564.3	5.1554	0.494	2339.405	2339.5466	1	1839.7	44.0%	2	R.EVAAFAQFGSDLDAATQQLLSR.G	3

gi|209862887|ref|NP_0

10.5%

439

48434

5.1

hypothetical protein LOC81556 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19939.19939.2	3.9259	0.3217	1602.209	1601.9131	1	1524.9	80.8%	2	K.LIDLAYTPFHAVLK.C	2
	step04.19773.19773.2	4.1773	0.5317	2245.297	2244.6616	1	644.1	52.6%	4	K.SNLMMSLFEPGPEPLPWLGK.M	2 2
	step04.20214.20214.2	3.511	0.5051	1279.449	1279.552	1	1654.6	81.8%	2	K.AALAFGFLDLLK.G	2 2

Similarities: gi|13540586|ref|NP_11(2:1)

gi|143770802|ref|NP_0

10.5%

325

36909

8.8

39S ribosomal protein L1, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14039.14039.2	2.6583	0.1821	1921.401	1920.0852	1	447.5	50.0%	1	K.AYPYMEGEPEDDVYLK.R	2
*	step06.19351.19351.2	2.6443	0.2646	1323.623	1324.5496	1	946.4	85.0%	1	K.KFQILDFTSPK.Q	2
*	step04.11821.11821.1	2.5651	0.094	796.555	795.9895	15	376.4	83.3%	1	K.IDPLLPK.E	1

U	gi\|224493972\|ref\|NP_0	3	4	10.5%	324	36178	5.5	thioredoxin domain-containing protein 5 isoform 3 [Homo sapiens]
U	gi\|42794771\|ref\|NP_11	3	4	7.9%	432	47629	6.0	thioredoxin domain-containing protein 5 isoform 1 precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.9416.9416.2	3.6086	0.4841	1968.04	1967.0734	1	867.9	60.0%	2	K.VDCTQHYELCSGNQVR.G	2
step05.18508.18508.2	2.9102	0.4079	1153.34	1153.3567	1	540.8	81.2%	1	R.GYPTLLWFR.D	2
step05.17963.17963.2	2.7235	0.2752	1079.978	1080.3041	1	695.8	81.2%	1	R.GYPTLLLFR.G	2

gi|33356177|ref|NP_00

593

68011

7.3

tyrosine-protein phosphatase non-receptor type 11 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19814.19814.2	3.8583	0.4128	2111.021	2111.3884	1	733.4	64.7%	2	R.WFHPNITGVEAENLLLTR.G	2
*	step02.17939.17939.3	4.1499	0.3086	3159.11	3158.4844	1	1130.8	32.4%	1	R.VVLHDGDPNEPVSDYINANIIMPEFETK.C	3
*	step06.20137.20137.2	3.6575	0.3689	1929.338	1929.2312	1	645.2	71.4%	2	R.FIYM*AVQHYIETLQR.R	2

gi|7661914|ref|NP_055

389

45531

5.6

26S proteasome non-ATPase regulatory subunit 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19091.19091.2	2.377	0.3213	1112.625	1112.3062	1	826.0	87.5%	2	R.FLLSLPEHR.G	2
*	step05.18056.18056.2	4.1745	0.4568	1604.942	1604.8754	1	1220.0	67.9%	2	K.GAEILEVLHSLPAVR.Q	2
*	step03.11930.11930.2	2.6698	0.309	1858.479	1858.0431	1	547.3	53.3%	1	K.IDKVNEIVETNRPDSK.N	2

gi|4557237|ref|NP_000

427

45200

8.8

acetyl-CoA acetyltransferase, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20650.20650.2	5.5879	0.57	1703.962	1703.0157	1	1812.5	75.0%	3	R.TPIGSFLGSLSLLPATK.L	2
*	step03.20151.20151.2	4.5895	0.3716	2821.069	2820.338	1	431.6	34.6%	1	R.IVAFADAAVEPIDFPIAPVYAASMVLK.D	2
*	step03.20091.20091.3	6.9613	0.4927	2821.732	2820.338	1	2686.7	41.3%	2	R.IVAFADAAVEPIDFPIAPVYAASMVLK.D	3

U	gi\|224591430\|ref\|NP_0	2	4	10.3%	379	43634	9.6	cell growth-regulating nucleolar protein [Homo sapiens]
U	gi\|8923398\|ref\|NP_060	2	4	10.3%	379	43634	9.6	cell growth-regulating nucleolar protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.16863.16863.2	4.0109	0.3908	1632.722	1631.8113	1	1268.3	73.1%	2	R.ELLEQISAFDNVPR.K	2
	step03.19911.19911.3	5.1275	0.4666	2859.185	2858.0686	1	1466.5	40.6%	2	K.VHNESILDQVWNIFSEASNSEPVNK.E	3

gi|4506201|ref|NP_002

263

28480

6.9

proteasome subunit beta type-5 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.11294.11294.2	2.4109	0.1815	1280.56	1281.44	1	530.3	66.7%	1	R.ATAGAYIASQTVK.K	2
	step04.13927.13927.2	3.3626	0.3809	1522.414	1522.6467	1	1193.3	69.2%	1	R.DAYSGGAVNLYHVR.E	2

gi|117938251|ref|NP_0

10.2%

869

100232

10.0

bcl-2-associated transcription factor 1 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15947.15947.2	2.9492	0.3103	2032.994	2033.0507	1	307.1	37.5%	1	R.AEGEWEDQEALDYFSDK.E	2 2 2
step05.15790.15790.2	2.4819	0.0906	1652.946	1653.7965	1	525.8	61.1%	1	K.LKDLFDYS#PPLHK.N	2 2 2
step04.13525.13525.2	3.4274	0.321	1812.617	1813.069	1	650.2	62.5%	1	K.MAPVPLDDSNRPASLTK.D	2 2 2 2
step04.13089.13089.2	2.8761	0.3047	1828.515	1829.0684	1	397.3	56.2%	5	K.M*APVPLDDSNRPASLTK.D	2 2 2 2
step06.18214.18214.2	3.1388	0.3016	1168.466	1168.4111	1	1149.0	85.0%	2	R.LLASTLVHSVK.K	2 2 2 2
step05.19902.19902.2	2.3141	0.131	1924.38	1923.9131	170	113.3	25.0%	1	K.S#AAM*T#LNERFTSYQK.A	2 2 2
step03.10411.10411.2	3.6831	0.3771	1898.129	1897.9381	1	814.5	60.0%	3	R.GTFHDDRDDGVDYWAK.R	2 2

Similarities: gi|310112868|ref|XP_0(6:1)
gi|7661958|ref|NP_055(6:1)
gi|117938254|ref|NP_0(4:3)

U	gi\|89353278\|ref\|NP_00	2	2	10.2%	412	45626	5.0	serologically defined colon cancer antigen 3 isoform 2 [Homo sapiens]
U	gi\|89353283\|ref\|NP_00	2	2	11.6%	362	40058	4.9	serologically defined colon cancer antigen 3 isoform 3 [Homo sapiens]
U	gi\|89353281\|ref\|NP_00	2	2	9.7%	435	47961	5.1	serologically defined colon cancer antigen 3 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.13469.13469.2	3.9918	0.3147	1726.441	1725.8783	1	1057.8	64.3%	1	R.TLQISYDALKDENSK.L	2
	step03.20158.20158.3	5.2851	0.4464	3253.05	3253.6042	1	1201.1	33.7%	1	K.M*IKEESDYHDLESVVQQVEQNLELMTK.R	3

gi|66933016|ref|NP_00

10.1%

514

55805

6.9

inosine-5'-monophosphate dehydrogenase 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14658.14658.2	2.698	0.1382	1431.19	1431.5721	1	723.5	70.8%	1	R.HGFCGIPITDTGR.M	2
*	step05.14948.14948.2	4.7128	0.4798	2086.905	2087.3652	1	1403.9	60.5%	1	K.DKYPNLQVIGGNVVTAAQAK.N	2
*	step06.18728.18728.2	4.5492	0.5344	1892.705	1893.1786	1	2032.3	80.6%	1	R.FGVPVIADGGIQNVGHIAK.A	2

gi|294774576|ref|NP_0

10.1%

474

52214

4.8

serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform e [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.19440.19440.2	4.0177	0.4745	1371.93	1371.651	1	2213.2	91.7%	2	K.KLSTIALALGVER.T	2 2 2
step03.16293.16293.2	3.724	0.4338	1243.493	1243.478	1	1495.5	90.9%	2	K.LSTIALALGVER.T	2 2 2
step03.17349.17349.2	5.0076	0.3881	1944.164	1943.2277	1	1313.5	59.4%	2	R.LNIISNLDCVNEVIGIR.Q	2 2 2 2
step02.19577.19577.2	4.2503	0.5229	1926.68	1926.2004	1	999.5	67.6%	2	R.QLSQSLLPAIVELAEDAK.W	2 2 2 2

Similarities: gi|21361399|ref|NP_05(4:0)
gi|294774574|ref|NP_0(4:0)
gi|294774572|ref|NP_8(2:2)

U	gi\|300244560\|ref\|NP_0	2	2	10.1%	258	29065	7.8	cysteine-rich secretory protein 3 isoform 1 precursor [Homo sapiens]
U	gi\|300244562\|ref\|NP_0	2	2	9.7%	268	30116	7.6	cysteine-rich secretory protein 3 isoform 2 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.19219.19219.2	2.2589	0.1287	1504.551	1503.6945	189	241.0	41.7%	1	K.HNELRRAVSPPAR.N	2
	step02.12422.12422.2	3.0673	0.1613	1508.798	1507.6538	1	833.1	66.7%	1	K.M*EWNKEAAANAQK.W	2

gi|119226260|ref|NP_0

10.0%

916

103702

9.0

calcium homeostasis endoplasmic reticulum protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13041.13041.2	3.1912	0.4236	1344.335	1344.5758	1	1277.9	75.0%	2	K.LALEQQQLICK.Q	2
*	step02.19402.19402.3	5.3721	0.3481	2995.207	2995.3418	1	2369.7	43.8%	1	K.LLEETQLDMNEFDNLLQPIIDTCTK.D	3
*	step02.18772.18772.3	4.0967	0.2101	3011.247	3011.3413	1	1136.5	34.4%	1	K.LLEETQLDM*NEFDNLLQPIIDTCTK.D	3
*	step03.13574.13574.2	3.3654	0.2188	1230.415	1230.3547	1	1687.3	90.0%	1	R.ITADGAHFELR.L	2
*	step03.16459.16459.2	3.2616	0.439	2354.151	2354.6777	1	641.6	52.6%	1	K.VVVPIYCTSFLAVEEDKQQK.I	2
*	step06.14902.14902.2	2.3204	0.1524	1121.222	1121.3348	5	246.7	66.7%	1	R.LPPPMPPSER.L	2
*	step02.18293.18293.2	4.8014	0.4988	1877.642	1876.962	1	1228.9	67.9%	2	R.NSEGWEQNGLYEFFR.A	2

U	gi\|24234690\|ref\|NP_00	5	9	10.0%	680	77642	5.8	double-strand break repair protein MRE11A isoform 2 [Homo sapiens]
U	gi\|5031923\|ref\|NP_005	5	9	9.6%	708	80593	5.9	double-strand break repair protein MRE11A isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.18299.18299.2	4.1016	0.3539	1494.458	1493.6436	1	1926.2	83.3%	2	R.GNDTFVTLDEILR.L	2
step02.15108.15108.2	2.653	0.3179	1126.58	1126.3711	1	954.8	83.3%	2	K.IDISPVLLQK.G	2
step02.16080.16080.2	4.0715	0.4301	1405.627	1404.5931	1	1910.9	83.3%	1	K.IALYGLGSIPDER.L	2
step05.18209.18209.2	2.8928	0.2994	2049.003	2049.191	6	100.9	43.3%	2	K.EDENSWFNLFVIHQNR.S	2
step05.17520.17520.2	4.6979	0.3929	1843.551	1843.075	1	1643.6	83.3%	2	R.LRVDYSGGFEPFSVLR.F	2

U	gi\|15431295\|ref\|NP_15	2	4	10.0%	211	24261	11.7	60S ribosomal protein L13 [Homo sapiens]
U	gi\|15431297\|ref\|NP_00	2	4	10.0%	211	24261	11.7	60S ribosomal protein L13 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15177.15177.2	2.7244	0.2676	951.222	951.0584	1	561.0	85.7%	2	R.GFSLEELR.V	2
	step06.16333.16333.2	2.4891	0.3254	1399.638	1399.6847	1	525.0	62.5%	2	K.LATQLTGPVM*PVR.N	2

U	gi\|118582269\|ref\|NP_0	2	3	10.0%	201	22460	8.0	serine/arginine-rich splicing factor 1 isoform 2 [Homo sapiens]
U	gi\|5902076\|ref\|NP_008	2	3	8.1%	248	27745	10.4	serine/arginine-rich splicing factor 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14388.14388.2	3.1873	0.2953	1257.915	1258.4016	1	1058.6	83.3%	1	R.TKDIEDVFYK.Y	2
	step02.8918.8918.2	2.7012	0.2906	1078.853	1079.1882	1	910.9	94.4%	2	R.DGTGVVEFVR.K	2

gi|21218438|ref|NP_06

9.9%

593

65261

9.7

transcriptional repressor p66-beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.6696.6698.3	3.6663	0.0883	3064.041	3063.9934	146	334.9	17.6%	1	R.S#EPERGRLTPS#PDIIVLSDNEASS#PR.S	3
*	step06.15830.15830.2	3.0235	0.4026	1392.419	1392.5889	1	942.1	83.3%	1	R.VIAPNPAQLQGQR.G	2
*	step04.11917.11917.2	4.857	0.5739	1984.667	1985.228	1	1448.7	65.8%	2	R.LQQQAALSPTTAPAVSSVSK.Q	2

gi|119703753|ref|NP_0

9.9%

564

60067

8.0

keratin, type II cytoskeletal 6B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.11497.11497.2	2.7779	0.4224	1425.354	1425.4828	1	968.3	62.5%	1	R.GSGGLGGACGGAGFGSR.S	2 2 2 2
step04.12933.12933.2	4.1704	0.5749	1599.179	1599.7212	1	1253.7	68.8%	2	R.ISIGGGSCAISGGYGSR.A	2 2 2 2
step02.18066.18066.1	2.2392	0.09	1329.837	1330.5093	1	555.3	72.7%	1	R.NLDLDSIIAEVK.A	1 1 1 1 1 1 1 1
step02.8349.8349.2	3.7393	0.0897	1180.321	1180.2925	1	1825.3	94.4%	8	K.YEELQITAGR.H	2 2

gi|68303575|ref|NP_00

9.9%

365

41937

9.6

casein kinase I isoform alpha isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13854.13854.2	2.3764	0.4533	1411.873	1410.686	1	1513.9	81.8%	1	K.TVLMLADQMISR.I	2 2 2
step04.16543.16543.2	3.1142	0.4853	1476.044	1476.726	1	821.3	87.5%	2	R.DIKPDNFLMGIGR.H	2 2
step02.14798.14798.2	2.2682	0.3081	1435.582	1434.598	4	211.6	65.0%	1	R.FEEAPDYMYLR.Q	2 2

Similarities: gi|68303572|ref|NP_00(3:0)
gi|269846834|ref|NP_6(1:2)

gi|10835218|ref|NP_00

9.8%

1001

112372

8.3

DNA topoisomerase 3-alpha [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18658.18658.2	4.9453	0.5173	1964.757	1964.2007	1	1182.5	70.0%	2	K.WQSCNPLVLFEAEIEK.Y	2
*	step03.20497.20497.3	5.9811	0.5832	3102.882	3101.534	1	1882.7	36.5%	3	R.IFPEVLAEQLISYGSCQFPTLGFVVER.F	3
*	step06.19553.19553.2	2.7732	0.2689	1427.723	1428.6627	1	699.5	68.2%	2	K.AIQAFVPEIFHR.I	2
*	step02.15975.15975.2	4.6944	0.4455	1816.118	1815.9186	1	1364.7	80.8%	2	R.NYLDVYPYDHWSDK.I	2
*	step02.17166.17166.2	3.5431	0.4378	1531.769	1530.707	1	619.2	69.2%	1	R.SAVWLPDSVLEASR.D	2
*	step05.11672.11672.2	3.6746	0.4615	1802.407	1801.9681	1	721.6	60.7%	7	R.DSSVCPVCQPHPVYR.L	2

gi|153791761|ref|NP_0

9.8%

625

70145

5.0

recQ-mediated genome instability protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16256.16256.2	2.4697	0.1513	2012.705	2013.392	44	87.0	27.1%	1	K.ILIY#GNISFRLGVLLLK.P	2
*	step06.18967.18967.2	3.0571	0.3543	1323.692	1323.6494	1	900.7	68.2%	2	R.LGVLLLKPENVK.V	2
*	step02.18207.18207.2	4.7485	0.4554	1863.843	1864.0428	1	2544.0	71.9%	1	K.VLGGEVDALLEEYAQEK.V	2
*	step02.16808.16808.2	4.771	0.4042	2390.573	2390.6782	1	391.1	42.9%	2	R.LIGEPDLVVSVIPNNSNENIPR.V	2

U	gi\|205360838\|ref\|NP_0	3	7	9.8%	480	52489	9.3	dnaJ homolog subfamily A member 3, mitochondrial isoform 1 [Homo sapiens]
U	gi\|205360840\|ref\|NP_0	3	7	10.4%	453	49612	9.4	dnaJ homolog subfamily A member 3, mitochondrial isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15874.15874.2	2.2521	0.2665	1317.642	1317.4292	3	458.4	63.6%	1	K.GGPTVDPEELFR.K	2
step04.14643.14643.2	2.3633	0.2559	1362.136	1361.5999	1	504.6	59.1%	1	R.GSIIISPCVVCR.G	2
step06.21510.21510.2	5.6292	0.5185	2342.362	2342.5935	1	1539.4	52.3%	5	R.DGADIHSDLFISIAQALLGGTAR.A	2

U	gi\|224028244\|ref\|NP_0	3	7	9.6%	471	54232	8.9	non-POU domain-containing octamer-binding protein isoform 1 [Homo sapiens]
U	gi\|34932414\|ref\|NP_03	3	7	9.6%	471	54232	8.9	non-POU domain-containing octamer-binding protein isoform 1 [Homo sapiens]
U	gi\|224028248\|ref\|NP_0	3	7	11.8%	382	43866	8.6	non-POU domain-containing octamer-binding protein isoform 2 [Homo sapiens]
U	gi\|224028246\|ref\|NP_0	3	7	9.6%	471	54232	8.9	non-POU domain-containing octamer-binding protein isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.484.484.3	4.0563	0.3412	2669.547	2669.9265	1	1518.4	37.5%	1	R.NLPQYVSNELLEEAFSVFGQVER.A	3
step04.490.490.2	5.8258	0.5536	2671.144	2669.9265	1	1154.7	52.3%	4	R.NLPQYVSNELLEEAFSVFGQVER.A	2
step05.15436.15436.2	3.7269	0.4959	2164.843	2164.43	1	1095.9	54.8%	2	R.FGQAATMEGIGAIGGTPPAFNR.A	2

U	gi\|21361159\|ref\|NP_00	4	6	9.6%	396	44244	5.2	pre-mRNA-splicing regulator WTAP isoform 1 [Homo sapiens]
U	gi\|23199976\|ref\|NP_69	4	6	25.2%	151	17801	5.5	pre-mRNA-splicing regulator WTAP isoform 2 [Homo sapiens]
U	gi\|23199974\|ref\|NP_69	4	6	25.2%	151	17801	5.5	pre-mRNA-splicing regulator WTAP isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.7872.7872.2	4.5023	0.4926	1469.541	1468.5509	1	1225.1	79.2%	2	K.YTDLNSNDVTGLR.E	2
step04.11593.11593.2	2.418	0.2746	1254.721	1254.421	1	411.8	70.0%	1	K.QVQQPSVAQLR.S	2
step03.18655.18655.2	5.1727	0.4509	1597.714	1596.9152	1	1694.3	84.6%	2	R.STMVDPAINLFFLK.M	2
step03.17960.17960.2	2.5913	0.3833	1613.768	1612.9146	1	525.1	53.8%	1	R.STM*VDPAINLFFLK.M	2

gi|74275346|ref|NP_00

9.6%

334

38340

6.0

S-adenosylmethionine decarboxylase proenzyme isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.23780.23780.2	2.4958	0.0985	2210.294	2210.2354	33	243.5	23.5%	1	K.T#DKQEAYVLSESS#MFVSK.R	2
*	step05.14234.14234.2	2.559	0.0806	1744.607	1745.0304	4	411.3	46.2%	1	R.RFILKT#CGTTLLLK.A	2

gi|50428935|ref|NP_06

9.5%

1059

112211

7.3

microtubule-associated protein 1S [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17267.17267.2	4.0493	0.413	2244.257	2245.5642	1	696.8	50.0%	2	R.VDAVLVTHPGADSLPGLNSLLR.R	2
*	step03.718.718.3	5.1199	0.5191	2507.541	2507.865	1	1668.7	39.1%	1	R.GEDEAELALSLLAQLGITPLPLSR.G	3
*	step06.19991.19991.2	2.8457	0.2278	1985.66	1986.3308	1	580.6	67.6%	1	R.VLFPGCTPPACLLDGLVR.L	2
*	step05.15114.15114.2	2.7255	0.1895	1909.799	1911.1509	1	606.7	56.2%	2	R.FLREPVVTPQDLEGPGR.A	2
*	step04.9758.9758.2	2.288	0.1776	1870.758	1871.0222	1	371.5	52.6%	1	K.AVPMAPAPASPGSSNDSSAR.S	2

gi|33469968|ref|NP_00

9.5%

719

81308

6.5

DNA replication licensing factor MCM7 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18052.18052.2	2.2749	0.1942	1635.603	1635.8848	1	564.4	57.7%	1	K.LFADAVQELLPQYK.E	2
*	step03.12709.12709.2	2.2709	0.2085	1435.227	1434.6028	40	190.7	50.0%	1	R.SPQNQYPAELMR.R	2
*	step06.18518.18518.2	2.2123	0.2922	1671.998	1670.8492	49	261.8	46.2%	1	R.FELYFQGPSSNKPR.V	2
	step04.14817.14817.2	2.8534	0.1415	1187.876	1188.3594	1	769.8	75.0%	2	R.GSSGVGLTAAVLR.D	2 2
	step04.16759.16759.2	4.887	0.3677	1654.67	1653.9048	1	1262.4	71.4%	2	R.SLEQNIQLPAALLSR.F	2 2

Similarities: gi|33469922|ref|NP_87(2:3)

gi|25777730|ref|NP_00

9.5%

517

57249

7.0

aldehyde dehydrogenase X, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18423.18423.2	3.4436	0.4105	1817.81	1818.1467	1	857.3	62.5%	1	K.VAEQTPLSALYLASLIK.E	2
*	step06.19303.19303.2	3.2039	0.1955	1930.792	1931.204	1	482.4	53.1%	1	R.GFFIKPTVFGGVQDDM*R.I	2
*	step05.16998.16998.2	4.1794	0.3246	1717.004	1717.0441	1	1265.5	64.3%	2	R.IAKEEIFGPVQPLFK.F	2

gi|13129006|ref|NP_07

9.4%

737

82565

9.2

ATP-dependent RNA helicase DDX50 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15560.15560.2	4.4486	0.319	1669.678	1669.8132	1	1200.4	75.0%	3	K.EGAFSNFPISEETIK.L	2 2
*	step05.16934.16934.2	3.6408	0.4386	1265.482	1265.5253	1	809.9	75.0%	2	R.GVTYLFPIQVK.T	2
*	step04.17952.17952.2	3.2225	0.5506	1294.451	1294.5236	1	952.0	85.0%	2	K.TFSFAIPLIER.L	2
*	step04.11661.11661.2	3.1786	0.4788	1014.535	1014.20404	1	1207.4	94.4%	2	K.VLVATNVAAR.G	2
*	step06.20976.20976.2	5.442	0.5571	2112.063	2112.3315	1	1744.4	57.1%	2	K.GAVDALAAALAHISGASSFEPR.S	2

Similarities: gi|50659095|ref|NP_00(1:4)

gi|4502599|ref|NP_001

9.4%

277

30375

8.3

carbonyl reductase [NADPH] 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16440.16440.2	2.4556	0.092	1739.625	1740.0311	1	462.2	53.6%	1	R.DVCTELLPLIKPQGR.V	2
*	step04.12697.12697.2	2.9845	0.435	1206.746	1207.426	1	1496.8	90.0%	1	R.VVNVSSIM*SVR.A	2

gi|5032087|ref|NP_005

9.3%

793

88886

5.2

splicing factor 3A subunit 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.16288.16288.2	3.843	0.448	1930.835	1932.0856	1	820.4	67.9%	1	K.FNFLNPNDPYHAYYR.H	2 2
*	step02.19158.19158.3	4.7287	0.4873	2660.803	2660.9548	1	1798.2	42.4%	2	K.EPPPEFEFIADPPSISAFDLDVVK.L	3
	step06.17321.17321.1	1.9048	0.1024	1646.882	1646.7874	7	151.9	42.4%	1	R.QFLT#QLM*QKEQR.N	1 1
	step06.17814.17814.2	4.9996	0.512	2378.974	2378.7058	1	874.9	52.3%	3	K.ASKPLPPAPAPDEYLVSPITGEK.I	2 2

Similarities: gi|53831995|ref|NP_00(3:1)

gi|20070125|ref|NP_00

9.3%

508

57116

4.9

protein disulfide-isomerase precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.20642.20642.3	3.9558	0.3432	2936.499	2937.247	1	569.7	25.0%	2	R.TGPAATTLPDGAAAESLVESSEVAVIGFFK.D	3
*	step03.16954.16954.2	3.6712	0.3418	2011.913	2011.2208	1	795.1	62.5%	1	R.NNFEGEVTKENLLDFIK.H	2

U	gi\|20127586\|ref\|NP_06	3	6	9.2%	608	68420	7.6	tyrosyl-DNA phosphodiesterase 1 [Homo sapiens]
U	gi\|57242805\|ref\|NP_00	3	6	9.2%	608	68420	7.6	tyrosyl-DNA phosphodiesterase 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16676.16676.2	3.3596	0.4097	1837.609	1837.1086	1	890.7	66.7%	1	K.SSVPLYLIYPSVENVR.T	2
step02.13918.13918.2	5.5463	0.5762	2170.69	2170.3613	1	1032.6	65.0%	2	R.TSLEGYPAGGSLPYSIQTAEK.Q	2
step03.20094.20094.2	5.535	0.5458	2090.84	2091.3906	1	1508.2	77.8%	3	R.SYELGVLFLPSAFGLDSFK.V	2

gi|4826659|ref|NP_004

9.2%

272

30629

6.0

F-actin-capping protein subunit beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.542.542.2	4.251	0.4042	2784.104	2785.1306	1	434.5	43.8%	2	K.NLSDLIDLVPSLCEDLLSSVDQPLK.I	2
*	step03.545.545.3	4.0434	0.2962	2785.824	2785.1306	1	684.2	31.2%	2	K.NLSDLIDLVPSLCEDLLSSVDQPLK.I	3

gi|4504733|ref|NP_003

9.1%

1257

133767

8.4

insulin receptor substrate 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15600.15600.2	2.8871	0.2545	1240.658	1240.4791	1	1193.7	88.9%	2	K.DVWQVIVKPR.G	2
*	step02.16484.16484.2	3.4542	0.3238	1480.293	1480.6814	1	2024.5	86.4%	1	R.LCLTDEEVVFVR.L	2
*	step04.20745.20745.3	4.2725	0.2562	1742.513	1742.0535	1	1219.7	48.3%	1	R.LNTEVASVVVQLLSIR.R	3
*	step03.20496.20496.2	4.6502	0.5165	1742.574	1742.0535	1	1010.2	70.0%	7	R.LNTEVASVVVQLLSIR.R	2
*	step03.19674.19674.3	4.2641	0.5005	3348.313	3347.8008	1	643.7	27.7%	2	R.STVIGPGELWMQVDDCVVAQNMHELFLEK.M	3
*	step02.14068.14068.2	3.1164	0.4889	1454.444	1454.5876	1	1196.3	83.3%	1	R.AIGDGEDEMLFTR.R	2
*	step06.20330.20330.2	4.0467	0.4658	1588.647	1588.7467	1	746.7	70.8%	2	K.SWSSYFSLPNPFR.S	2
*	step05.12075.12075.2	2.5728	0.3145	2062.65	2062.1497	3	280.0	33.3%	1	R.GAQDVAGGSNPGAHNPSANLAR.G	2

gi|21362070|ref|NP_07

9.1%

449

50047

7.7

hypothetical protein LOC79034 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.10977.10977.2	2.4382	0.3053	1121.622	1122.3577	1	909.2	88.9%	1	K.LVSM*AVAVCR.I	2
*	step04.17563.17563.2	3.9445	0.4587	1543.722	1543.7855	1	2156.5	83.3%	2	R.IPVLECAASWLQR.T	2
*	step05.20225.20225.2	4.6614	0.4712	2108.993	2109.5205	1	1270.6	64.7%	2	R.LGLILFDHMVPLVEEINR.L	2

U	gi\|55770895\|ref\|NP_00	10	20	9.0%	1302	146086	5.3	protein LAP2 isoform 7 [Homo sapiens]
U	gi\|8923909\|ref\|NP_061	10	20	8.5%	1371	153926	5.5	protein LAP2 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.19746.19746.2	3.6036	0.4314	2365.204	2365.7117	3	258.0	35.7%	1	K.LSLPDNDLTTLPASIANLINLR.E	2
step03.19764.19764.3	4.3876	0.3251	2365.623	2365.7117	1	1286.8	35.7%	1	K.LSLPDNDLTTLPASIANLINLR.E	3
step02.19822.19822.2	3.94	0.4257	2418.629	2418.682	1	848.0	50.0%	2	R.LDLGSNEFTEVPEVLEQLSGLK.E	2
step02.19869.19869.3	5.2511	0.4949	2418.971	2418.682	1	1279.7	40.5%	2	R.LDLGSNEFTEVPEVLEQLSGLK.E	3
step03.268.268.3	5.0067	0.3472	3468.854	3468.8347	1	535.4	25.0%	4	R.LDLGSNEFTEVPEVLEQLSGLKEFWMDANR.L	3
step03.20568.20568.3	3.7228	0.3336	3486.146	3484.834	3	430.9	20.7%	1	R.LDLGSNEFTEVPEVLEQLSGLKEFWM*DANR.L	3
step06.20182.20182.2	3.0487	0.3366	1293.548	1293.5786	1	865.6	90.9%	2	R.LTFIPGFIGSLK.Q	2
step05.16434.16434.2	4.6359	0.5387	2316.774	2316.5564	1	700.7	57.9%	4	R.TFAADHNYLQQLPPEIGSWK.N	2
step05.16191.16191.2	4.5873	0.4791	1626.569	1625.9401	1	1184.1	83.3%	2	K.MVLTNYMFPQQPR.T	2
step02.13776.13776.2	2.7062	0.243	2071.067	2071.338	1	439.7	36.8%	1	K.ISEPEAEISPGSLPVTANMK.A	2

gi|217330644|ref|NP_0

423

47708

5.9

ribosome biogenesis protein WDR12 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19626.19626.2	3.0916	0.4194	2663.047	2663.9602	1	294.9	35.4%	1	K.YAVDDVPFSIPAASEIADLSNIINK.L	2
*	step02.19623.19623.3	4.1241	0.3903	2664.203	2663.9602	1	974.6	31.2%	1	K.YAVDDVPFSIPAASEIADLSNIINK.L	3
*	step05.13720.13720.2	3.0949	0.189	1417.064	1416.6688	1	653.3	58.3%	1	K.SIM*TIVGHTDVVK.D	2

gi|18860920|ref|NP_00

423

45510

6.4

steroid hormone receptor ERR1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.20258.20258.2	5.1542	0.537	2432.033	2431.6375	1	1775.7	54.8%	2	R.SLPLQDELAFAEDLVLDEEGAR.A	2
*	step04.20844.20844.3	3.6718	0.3849	1553.072	1552.8436	1	1195.7	50.0%	1	R.AAGLGELGAALLQLVR.R	3
*	step06.44.44.2	5.0593	0.432	1553.669	1552.8436	1	2685.8	76.7%	2	R.AAGLGELGAALLQLVR.R	2

gi|56676391|ref|NP_05

357

41228

5.5

activating signal cointegrator 1 complex subunit 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17647.17647.2	3.1962	0.3662	2233.859	2234.4983	1	893.8	57.5%	1	K.TSISIPKPGQDGEIVITGQHR.N	2
*	step04.17358.17358.2	3.5897	0.4148	1349.55	1349.5607	1	1137.8	85.0%	2	R.TRIDVLLDTFR.R	2

gi|5292161|ref|NP_002

377

40737

4.8

26S proteasome non-ATPase regulatory subunit 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13246.13246.2	3.1611	0.3589	1712.355	1711.8947	1	487.3	53.6%	2	R.LQAQQDAVNIVCHSK.T	2
*	step04.14252.14252.2	2.4599	0.4072	969.312	968.1256	1	544.0	85.7%	1	K.ITFCTGIR.V	2
*	step04.14648.14648.2	2.8361	0.3481	1178.296	1178.3629	1	1476.1	90.0%	2	K.LTAFVNTLNGK.D	2

gi|13899231|ref|NP_11

267

30243

10.1

39S ribosomal protein L9, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17684.17684.2	3.2815	0.4324	1248.366	1248.4995	1	1069.9	77.3%	2	K.NLGVVVAPHTLK.L	2
*	step06.17622.17622.2	2.3941	0.2527	1375.572	1375.6616	1	654.5	68.2%	1	R.VPMSVVNFEKPK.T	2

U	gi\|45593130\|ref\|NP_05	4	6	8.9%	549	61993	9.2	guanine nucleotide-binding protein-like 3 isoform 1 [Homo sapiens]
U	gi\|45643129\|ref\|NP_99	4	6	9.1%	537	60540	8.8	guanine nucleotide-binding protein-like 3 isoform 2 [Homo sapiens]
U	gi\|45643127\|ref\|NP_99	4	6	9.1%	537	60540	8.8	guanine nucleotide-binding protein-like 3 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.12281.12281.2	2.3894	0.1353	1257.478	1257.4202	80	287.5	50.0%	1	R.KDPGVPNSAPFK.E	2
step02.8118.8118.2	2.3411	0.2774	1574.133	1573.7236	1	635.8	57.7%	2	R.CPQVEEAIVQSGQK.K	2
step03.17026.17026.2	2.3889	0.2378	1537.712	1537.7412	1	361.8	72.7%	1	K.ENLESWLNYLKK.E	2
step03.12879.12879.2	3.0927	0.3861	1240.65	1240.3813	3	365.9	65.0%	2	K.LLGGFQETCSK.A	2

gi|24430151|ref|NP_00

8.9%

440

49185

6.2

26S protease regulatory subunit 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step05.14366.14366.2	3.2167	0.3935	1159.371	1159.3596	1	1046.8	77.3%	1	K.GVILYGPPGTGK.T	2 2
*	step03.12801.12801.2	2.8903	0.2881	1278.479	1279.4274	1	753.4	72.7%	1	K.AVANQTSATFLR.V	2
*	step02.19361.19361.2	4.3065	0.4776	1752.614	1752.9703	1	2408.8	78.6%	1	R.TMLELLNQLDGFDSR.G	2

Similarities: gi|24497435|ref|NP_00(1:2)

U	gi\|28416436\|ref\|NP_78	2	2	8.9%	414	45676	5.8	ADP-ribosylation factor GTPase-activating protein 1 isoform b [Homo sapiens]
U	gi\|8922652\|ref\|NP_060	2	2	9.1%	406	44668	5.7	ADP-ribosylation factor GTPase-activating protein 1 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.18194.18194.2	2.4189	0.0851	2222.683	2221.399	26	204.1	26.5%	1	R.GLGVHLS#FVRSVT#MDKWK.D	2
	step03.13876.13876.2	2.2926	0.1619	2154.71	2155.0361	11	161.0	21.1%	1	R.FAS#AAKEGATKFGS#QAS#QK.F	2

gi|56181387|ref|NP_00

8.9%

303

34856

5.9

E3 ubiquitin-protein ligase CHIP [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15816.15816.2	2.7272	0.345	1318.413	1318.4603	1	752.6	72.7%	1	R.LNFGDDIPSALR.I	2
*	step04.15387.15387.2	3.7235	0.4225	1699.859	1699.9938	1	1219.4	85.7%	2	R.SPLTQEQLIPNLAM*K.E	2

gi|6912634|ref|NP_036

8.9%

203

23577

10.9

60S ribosomal protein L13a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16303.16303.1	1.8184	0.2236	782.599	782.9525	2	201.6	80.0%	1	K.YLAFLR.K	1
*	step04.14600.14600.2	2.4416	0.1758	1376.592	1376.5814	2	355.4	63.6%	1	K.VFDGIPPPYDKK.K	2

gi|30348954|ref|NP_06

1006

110136

6.9

E3 ubiquitin-protein ligase MIB1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17488.17488.2	3.8006	0.5925	2370.206	2370.5159	1	1583.1	67.5%	2	R.SFESPEEVVVVWDNGTAANYR.C	2
*	step04.16278.16278.2	3.2281	0.5436	1177.675	1177.3766	1	972.7	88.9%	2	R.WTFNPAVLTK.A	2
*	step04.16502.16502.2	4.1467	0.6108	1597.441	1597.8201	1	1111.8	75.0%	2	R.GHGEWAEAMLPTLGK.V	2
*	step03.16146.16146.3	6.5388	0.5261	2855.273	2855.0566	1	2398.4	42.0%	3	K.TLLDFGCHPSLQDSEGDTPLHDAISK.K	3
*	step05.15471.15471.2	2.9121	0.1863	2039.716	2040.2708	1	819.7	62.5%	1	K.NMIFLCGHGTCQLCGDR.M	2

gi|4557761|ref|NP_000

934

104743

5.8

DNA mismatch repair protein Msh2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19848.19848.3	3.8125	0.0931	2962.221	2961.3516	5	840.9	26.0%	1	R.KLGLCEFPDNDQFSNLEALLIQIGPK.E	3
*	step02.20127.20127.2	3.1841	0.4849	2833.086	2833.1787	1	479.6	37.5%	1	K.LGLCEFPDNDQFSNLEALLIQIGPK.E	2
*	step02.20106.20106.3	4.9712	0.4152	2833.275	2833.1787	1	1182.2	35.4%	2	K.LGLCEFPDNDQFSNLEALLIQIGPK.E	3
*	step02.20028.20028.3	4.2751	0.3385	1619.109	1618.8126	1	2703.5	59.6%	1	R.LNLVEAFVEDAELR.Q	3
*	step02.19994.19994.2	5.4738	0.5251	1619.5	1618.8126	1	2810.2	88.5%	3	R.LNLVEAFVEDAELR.Q	2
*	step04.17685.17685.2	4.8008	0.4577	1941.605	1942.2479	1	1805.9	78.1%	2	R.LYQGINQLPNVIQALEK.H	2
*	step02.7972.7972.2	3.4414	0.4333	1639.534	1638.7576	1	1307.1	84.6%	2	K.NKTEYEEAQDAIVK.E	2
*	step02.15251.15251.2	2.7873	0.4133	1293.7	1293.4109	1	608.9	75.0%	1	K.NNSFVNEIISR.I	2

U	gi\|213688375\|ref\|NP_0	4	7	8.8%	377	42009	5.4	actin, aortic smooth muscle [Homo sapiens]
U	gi\|4501889\|ref\|NP_001	4	7	8.8%	376	41877	5.5	actin, gamma-enteric smooth muscle propeptide [Homo sapiens]
U	gi\|4501883\|ref\|NP_001	4	7	8.8%	377	42009	5.4	actin, aortic smooth muscle [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15010.15010.2	2.246	0.4034	946.346	946.1282	1	814.4	87.5%	1	R.AVFPSIVGR.P	2 2 2 2 2
step03.15469.15469.2	3.3647	0.3517	1961.734	1962.1718	1	1300.7	63.3%	2	K.YPIEHGIITNWDDMEK.I	2 2
step03.14738.14738.2	3.1797	0.317	1978.724	1978.1711	1	319.8	53.3%	3	K.YPIEHGIITNWDDM*EK.I	2 2
step02.11756.11756.2	2.6918	0.2741	1015.309	1015.16266	1	313.3	85.7%	1	R.DLTDYLM*K.I	2 2 2

Similarities: gi|4501885|ref|NP_001(2:2)
gi|4501881|ref|NP_001(4:0)
gi|134133226|ref|NP_0(1:3)
gi|153791352|ref|NP_0(1:3)

U	gi\|4506055\|ref\|NP_002	3	4	8.8%	351	40590	8.8	cAMP-dependent protein kinase catalytic subunit alpha isoform 1 [Homo sapiens]
U	gi\|46909584\|ref\|NP_99	3	4	9.0%	343	39822	8.7	cAMP-dependent protein kinase catalytic subunit alpha isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.11863.11863.2	2.2114	0.1516	896.431	895.98285	1	568.7	87.5%	1	K.TLGTGSFGR.V	2 2
step06.20077.20077.2	3.5963	0.4257	1389.688	1389.7096	1	1619.3	81.8%	2	R.ILQAVNFPFLVK.L	2
step05.15140.15140.2	2.4396	0.0863	1200.287	1200.4132	5	398.6	72.2%	1	R.NLLQVDLTKR.F	2 2

Similarities: gi|33636738|ref|NP_89(2:1)

gi|156415990|ref|NP_0

364

38518

10.8

Y-box-binding protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.12747.12747.2	3.7689	0.366	1745.628	1745.9144	1	1044.5	75.0%	3	R.NDTKEDVFVHQTAIK.R	2 2 2
	step02.13216.13216.2	4.4724	0.4672	1796.735	1796.8671	1	1641.8	75.0%	4	R.SVGDGETVEFDVVEGEK.G	2 2 2

Similarities: gi|34098946|ref|NP_00(2:0)
gi|224586882|ref|NP_0(2:0)

gi|17402904|ref|NP_47

272

28235

6.3

exosome complex exonuclease MTR3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.11034.11034.2	2.7443	0.1604	958.58	959.11865	1	1192.5	93.8%	3	K.VLCAVSGPR.Q	2
*	step02.17980.17980.2	2.9624	0.0991	1623.885	1623.8755	1	665.0	60.7%	2	R.ELALALQEALEPAVR.L	2

gi|38327039|ref|NP_00

8.7%

840

94331

5.2

heat shock 70 kDa protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11970.11970.2	2.7606	0.3795	1496.427	1496.5612	1	945.3	61.5%	1	R.AGGIETIANEYSDR.C	2
	step05.15636.15636.2	2.8614	0.254	1537.906	1536.7848	1	555.0	46.2%	1	R.GCALQCAILSPAFK.V	2 2 2
*	step02.18537.18537.2	2.5798	0.3904	1736.896	1736.989	1	441.2	50.0%	1	R.EFSITDVVPYPISLR.W	2
*	step02.18484.18484.2	4.3259	0.4468	2141.948	2142.3977	1	995.9	64.7%	2	K.TSTVDLPIENQLLWQIDR.E	2
*	step03.10482.10482.2	2.4546	0.1121	1416.731	1416.4872	12	349.9	48.5%	1	K.ELTST#CSPIISK.P	2

Similarities: gi|31541941|ref|NP_05(1:4)
gi|42544159|ref|NP_00(1:4)

U	gi\|13899253\|ref\|NP_11	2	2	8.7%	277	31435	7.3	uridine-cytidine kinase 1 isoform a [Homo sapiens]
U	gi\|209863022\|ref\|NP_0	2	2	11.9%	201	22761	6.3	uridine-cytidine kinase 1 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.19136.19136.2	2.2778	0.2075	1371.478	1371.4579	8	467.2	43.6%	1	R.PFLIGVS#GGTASGK.S	2
	step02.5349.5349.2	2.4112	0.1251	1248.345	1247.2305	1	469.1	66.7%	1	R.LFVDTDS#DVR.L	2

gi|7657198|ref|NP_055

8.6%

313

35236

10.0

probable dimethyladenosine transferase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14528.14528.2	2.6849	0.2785	1596.054	1594.7942	1	484.4	65.4%	1	K.IQQILTSTGFSDKR.A	2
*	step06.18901.18901.2	2.6932	0.3468	1442.865	1442.6031	1	642.7	66.7%	2	R.LLHGFNAEGIHFS.-	2

gi|19924129|ref|NP_00

8.5%

1312

153892

6.9

DNA repair protein RAD50 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8494.8494.2	2.3097	0.3113	1208.345	1208.2996	1	1398.5	83.3%	1	K.SYENELDPLK.N	2
*	step03.14146.14146.2	4.8113	0.4446	2216.133	2215.3274	1	1295.4	64.7%	1	K.VFQGTDEQLNDLYHNHQR.T	2
*	step02.20057.20057.3	5.6947	0.5059	2036.401	2036.2286	1	3072.4	51.5%	1	R.DSLIQSLATQLELDGFER.G	3
*	step02.20044.20044.2	6.5	0.6311	2036.914	2036.2286	1	3406.6	76.5%	1	R.DSLIQSLATQLELDGFER.G	2
*	step05.17038.17038.2	4.933	0.4115	1849.821	1850.0642	1	1652.4	80.0%	2	R.HSDELTSLLGYFPNKK.Q	2
*	step02.15827.15827.2	3.1383	0.2714	2634.713	2634.896	1	527.5	38.6%	1	R.LKNDIEEQETLLGTIM*PEEESAK.V	2
*	step04.17472.17472.2	2.938	0.1983	2275.961	2276.567	1	466.0	41.7%	2	K.KQKETELNKVIAQLSECEK.H	2
*	step05.15886.15886.2	3.0201	0.3106	885.067	885.1294	1	747.2	92.9%	1	K.VLASLIIR.L	2

gi|39725634|ref|NP_05

8.5%

1019

116465

9.1

la-related protein 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19034.19034.2	3.6111	0.376	1709.58	1709.0487	1	372.3	65.4%	4	K.WVPLQIDMKPEVPR.E	2
*	step05.19773.19773.2	4.0374	0.543	1905.552	1905.2097	1	558.7	59.4%	3	K.MDADGFLPITLIASFHR.V	2
*	step05.146.146.2	5.1735	0.4957	1704.861	1705.0316	1	2797.7	83.3%	3	R.VQALTTDISLIFAALK.D	2
*	step03.11870.11870.2	2.7921	0.3545	1713.761	1713.9539	3	527.7	60.0%	2	R.AVTPVPTKTEEVSNLK.T	2
*	step06.17839.17839.2	3.2518	0.3058	1489.61	1488.7799	1	879.6	77.3%	1	K.ILIVTQTPHYM*R.R	2
*	step03.14176.14178.2	2.2117	0.1807	1259.085	1259.436	4	599.0	72.7%	1	K.LFGAPEPSTIAR.S	2

gi|19923403|ref|NP_05

8.5%

293

32789

7.5

exosome complex exonuclease RRP4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15348.15348.2	3.2027	0.3767	1524.481	1524.8302	1	1033.1	57.1%	1	K.LGQGVLVQVSPSLVK.R	2
*	step04.15554.15554.2	3.6899	0.3197	1204.481	1204.3954	1	1752.4	88.9%	2	R.NCIISLVTQR.M	2

U	gi\|209862859\|ref\|NP_0	9	27	8.4%	1594	180403	6.7	DEP domain-containing protein 5 isoform 3 [Homo sapiens]
U	gi\|7662222\|ref\|NP_055	9	27	8.5%	1572	177909	6.7	DEP domain-containing protein 5 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16814.16814.2	5.4693	0.4772	2465.134	2464.7986	1	1274.4	59.5%	4	K.LGDIVEIAHPNDEYSPLLLQVK.S	2 2
step05.18254.18254.2	5.1002	0.5426	2565.492	2565.8613	1	1852.1	61.9%	4	K.SLKEDLQKETISVDQTVTQVFR.L	2 2
step05.18270.18270.3	6.6559	0.5098	2566.221	2565.8613	1	2958.8	46.4%	4	K.SLKEDLQKETISVDQTVTQVFR.L	3 3
step02.15963.15963.2	2.7629	0.3255	1623.774	1623.7892	1	1298.2	65.4%	2	K.ETISVDQTVTQVFR.L	2 2
step02.18830.18830.2	3.8487	0.4994	1393.692	1393.607	1	2009.4	86.4%	2	K.DVTLDLVELTFK.D	2 2
step04.18162.18162.2	6.2113	0.6071	2125.023	2126.395	1	1581.7	61.8%	8	K.DVTLDLVELTFKDQYIGR.G	2 2
step03.15577.15577.2	2.9315	0.2935	2009.607	2008.285	1	482.3	44.4%	1	R.TGQM*SVVITPGVGVFEVDR.L	2 2
step02.16959.16959.2	3.0675	0.4867	2443.942	2444.595	1	590.5	52.5%	1	K.ESENALPIQVDYDAYDAQVFR.L	2 2
step04.16682.16682.3	5.7133	0.5236	3467.728	3468.7166	1	1086.4	34.7%	1	R.QNMAELQGSGQRDPTHSSAELLELAYHEAAGR.H	3

Similarities: gi|55749924|ref|NP_00(8:1)

U	gi\|310112868\|ref\|XP_0	6	13	8.4%	876	101055	9.9	PREDICTED: bcl-2-associated transcription factor 1-like, partial [Homo sapiens]
U	gi\|310133313\|ref\|XP_0	6	13	8.4%	876	101033	9.9	PREDICTED: bcl-2-associated transcription factor 1-like isoform 2, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15947.15947.2	2.9492	0.3103	2032.994	2033.0507	1	307.1	37.5%	1	R.AEGEWEDQEALDYFSDK.E	2 2 2
step05.15790.15790.2	2.4819	0.0906	1652.946	1653.7965	1	525.8	61.1%	1	K.LKDLFDYS#PPLHK.N	2 2 2
step04.13525.13525.2	3.4274	0.321	1812.617	1813.069	1	650.2	62.5%	1	K.MAPVPLDDSNRPASLTK.D	2 2 2 2
step04.13089.13089.2	2.8761	0.3047	1828.515	1829.0684	1	397.3	56.2%	5	K.M*APVPLDDSNRPASLTK.D	2 2 2 2
step06.18214.18214.2	3.1388	0.3016	1168.466	1168.4111	1	1149.0	85.0%	2	R.LLASTLVHSVK.K	2 2 2 2
step03.10411.10411.2	3.6831	0.3771	1898.129	1897.9381	1	814.5	60.0%	3	R.GTFHDDRDDGVDYWAK.R	2 2

Similarities: gi|117938251|ref|NP_0(6:0)
gi|7661958|ref|NP_055(5:1)
gi|117938254|ref|NP_0(3:3)

gi|4505343|ref|NP_002

790

91839

6.4

nuclear cap-binding protein subunit 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19674.19674.2	4.1064	0.4983	2551.19	2551.7817	1	1735.7	54.3%	1	K.SACSLESNLEGLAGVLEADLPNYK.S	2
*	step06.19860.19860.2	3.9476	0.4813	2492.91	2491.894	1	793.2	57.1%	3	R.ILDIVPPTFSALCPANPTCIYK.Y	2
*	step02.18766.18766.2	2.785	0.367	2267.65	2268.505	1	650.6	50.0%	1	R.TQIVDCAAVANWIFSSELSR.D	2

U	gi\|110227619\|ref\|NP_0	2	4	8.4%	465	52800	6.7	MYC-induced nuclear antigen isoform a [Homo sapiens]
U	gi\|23346418\|ref\|NP_11	2	4	8.4%	464	52672	6.7	MYC-induced nuclear antigen isoform b [Homo sapiens]
U	gi\|110227621\|ref\|NP_6	2	4	8.4%	465	52800	6.7	MYC-induced nuclear antigen isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.19795.19795.2	5.1345	0.5718	2750.135	2749.0652	1	1101.9	44.2%	2	K.LEAAGGPSALNFDSPSSLFESLISPIK.T	2
	step04.16250.16250.2	3.7742	0.3791	1588.738	1587.8466	1	498.7	77.3%	2	K.EFWEQKPLLIQR.D	2

gi|13562114|ref|NP_11

451

50327

5.2

tubulin beta-1 chain [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12604.12604.2	2.6973	0.1753	1866.506	1866.1051	1	577.5	56.2%	1	R.EIVHIQIGQCGNQIGAK.F	2
	step03.13345.13345.2	2.7217	0.3898	1130.843	1131.2664	1	1043.8	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2 2
	step06.16523.16523.2	2.4043	0.2616	1259.535	1259.4392	1	704.5	75.0%	2	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2 2
	step06.18553.18553.1	1.9652	0.2714	1143.867	1144.4148	22	248.2	61.1%	1	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1 1
	step05.15742.15742.2	3.6737	0.49	1144.031	1144.4148	1	998.4	94.4%	4	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
	step06.17302.17302.2	3.5975	0.3477	1160.506	1160.4142	1	998.9	88.9%	2	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2

gi|161016765|ref|NP_0

395

45033

7.0

tudor domain-containing protein 12 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.17780.17780.2	2.2085	0.1766	1931.477	1932.1731	17	140.6	33.3%	1	K.NIRVVVES#FMQLPYR.A	2
*	step02.15531.15531.2	3.1284	0.0981	2274.842	2273.4514	6	315.6	33.3%	1	R.LCAVEEDTFEVY#LYVTIK.D	2

gi|5453880|ref|NP_006

249

28585

4.1

acidic leucine-rich nuclear phosphoprotein 32 family member A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.17120.17120.2	5.1935	0.5183	1974.39	1974.1108	1	1930.1	73.3%	2	K.SLDLFNCEVTNLNDYR.E	2 2
*	step03.17378.17378.2	3.6388	0.6288	2591.619	2591.8076	1	353.1	37.5%	2	K.SLDLFNCEVTNLNDYRENVFK.L	2

Similarities: gi|5454088|ref|NP_006(1:1)

gi|23510356|ref|NP_11

8.3%

568

65583

6.2

serine/threonine-protein kinase RIO1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8966.8966.2	2.5052	0.2695	1103.266	1103.2512	1	1216.6	88.9%	1	K.LNVTDSVINK.V	2
*	step02.9527.9527.2	2.5564	0.2445	1128.241	1128.2607	1	1652.5	88.9%	2	R.ATVEQVLDPR.T	2
	step03.14660.14660.2	2.2253	0.1693	1770.863	1771.0654	3	225.8	39.3%	1	R.LNTAEIPCPEPIM*LR.S	2 2
	step02.12473.12473.2	3.889	0.4672	1397.679	1397.559	1	1685.4	86.4%	2	K.VPALLENQVEER.T	2 2

Similarities: gi|23510358|ref|NP_69(2:2)

U	gi\|15812186\|ref\|NP_03	3	5	8.3%	471	54561	5.0	F-box only protein 3 isoform 1 [Homo sapiens]
U	gi\|15812188\|ref\|NP_20	3	5	9.4%	415	47530	6.6	F-box only protein 3 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.9252.9252.2	2.8099	0.2184	1300.147	1300.4302	1	923.4	83.3%	2	R.DLINCCYVSR.R	2
step02.15335.15335.2	2.5529	0.3325	1372.948	1373.4928	1	833.1	72.7%	1	K.SLFIDTYSDVGR.Y	2
step02.14034.14034.2	4.1773	0.438	1822.632	1822.9109	1	2292.2	71.9%	2	R.SEDLLDVDTAAGGFQQR.Q	2

gi|23510358|ref|NP_69

8.3%

327

38043

7.1

serine/threonine-protein kinase RIO1 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14660.14660.2	2.2253	0.1693	1770.863	1771.0654	3	225.8	39.3%	1	R.LNTAEIPCPEPIM*LR.S	2 2
	step02.12473.12473.2	3.889	0.4672	1397.679	1397.559	1	1685.4	86.4%	2	K.VPALLENQVEER.T	2 2

Similarities: gi|23510356|ref|NP_11(2:0)

gi|91208426|ref|NP_00

8.2%

2335

273599

8.8

pre-mRNA-processing-splicing factor 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19200.19200.2	3.3873	0.327	1706.516	1707.0099	1	594.3	70.8%	2	R.WQFTLPMMSTLYR.L	2
*	step03.384.384.2	5.0466	0.5515	2534.809	2534.8442	1	1408.2	57.5%	2	R.LANQLLTDLVDDNYFYLFDLK.A	2
*	step02.19302.19304.2	4.5625	0.417	2749.663	2750.9468	1	780.7	47.7%	2	K.SQEPLPDDDEEFELPEFVEPFLK.D	2
*	step05.17118.17118.2	3.5122	0.5366	1354.993	1354.5391	1	1668.7	85.0%	1	R.TILQHLSEAWR.C	2
*	step04.17283.17283.2	3.0429	0.2638	941.517	941.19293	1	893.2	92.9%	2	K.LLILALER.L	2
*	step02.19073.19073.3	4.2661	0.2822	2839.011	2839.2085	7	561.7	29.3%	1	K.EVGIEFM*DLYSHLVPVYDVEPLEK.I	3
*	step02.17182.17182.2	3.0886	0.3141	1888.326	1888.0813	1	793.5	53.6%	2	K.DNPNLLFNMCGFECR.I	2
*	step02.19293.19293.2	4.56	0.4408	1685.011	1684.9556	1	1886.9	82.1%	2	R.EAVVNTQELLDLLVK.C	2
*	step04.15216.15216.2	3.0804	0.4197	1017.357	1017.20636	1	854.5	93.8%	1	K.ANPALYVLR.E	2
*	step05.19881.19881.2	3.1261	0.2495	2163.788	2164.5962	1	600.7	44.4%	1	K.GMLDPLEVHLLDFPNIVIK.G	2
*	step05.19055.19055.2	3.6531	0.4492	2181.046	2180.5955	1	613.5	50.0%	1	K.GM*LDPLEVHLLDFPNIVIK.G	2
*	step04.16512.16512.2	2.4229	0.0933	1848.673	1848.1263	79	160.8	33.3%	1	K.GSELQLPFQACLKVEK.F	2
*	step02.20367.20367.2	4.6427	0.4283	2084.43	2084.3801	1	1179.5	65.6%	1	K.ATEPQMVLFNLYDDWLK.T	2

U	gi\|15147333\|ref\|NP_05	6	14	8.2%	964	107906	5.2	E3 ubiquitin-protein ligase TRIM37 [Homo sapiens]
U	gi\|52487176\|ref\|NP_00	6	14	8.2%	964	107906	5.2	E3 ubiquitin-protein ligase TRIM37 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.16515.16515.2	2.5047	0.3299	1201.282	1201.3834	1	752.3	81.2%	2	K.LSVFCWTCK.K	2
step04.584.584.3	4.4908	0.4845	2597.686	2597.8604	2	727.3	32.1%	3	K.TSLTQETELLESLLQEVEHQLR.S	3
step04.590.590.2	4.6851	0.4003	2598.101	2597.8604	1	1261.1	50.0%	6	K.TSLTQETELLESLLQEVEHQLR.S	2
step05.17117.17117.2	3.6306	0.3114	1606.767	1606.8951	1	1679.2	79.2%	1	K.SSEILMMFQQVHR.K	2
step03.16004.16004.2	3.6535	0.4466	1947.031	1946.1886	1	945.2	59.4%	1	R.ADPVYSPPLQVSGLCWR.L	2
step02.18177.18177.2	2.4411	0.0869	1974.385	1974.9845	1	443.9	35.3%	1	K.SNSPKPARSS#VAGSLS#LR.R	2

U	gi\|34222389\|ref\|NP_89	4	6	8.2%	625	68726	7.9	tRNA (uracil-5-)-methyltransferase homolog A [Homo sapiens]
U	gi\|51173878\|ref\|NP_07	4	6	8.2%	625	68726	7.9	tRNA (uracil-5-)-methyltransferase homolog A [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.18346.18346.2	2.7914	0.3308	1239.948	1239.4911	2	771.5	83.3%	2	R.ALLPWLLEQR.H	2
step02.14662.14662.2	2.8537	0.1361	1716.521	1716.8666	3	394.2	50.0%	1	R.ASGVTCLYFVEEGQR.K	2
step03.11026.11026.2	3.7252	0.4337	1989.939	1990.0736	1	1611.4	62.5%	2	R.VNAQDNELSNVEFHCGR.A	2
step04.13462.13462.2	2.3358	0.3364	1122.441	1122.2928	1	1305.4	93.8%	1	R.LLYVSCNPR.A	2

gi|5803167|ref|NP_006

8.2%

501

58849

5.4

splicing factor 3A subunit 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18655.18656.2	2.8943	0.0914	1447.605	1447.6213	1	587.3	63.6%	2	K.KWENGTFPGWPK.E	2
*	step02.16584.16584.2	3.619	0.4632	1311.542	1311.4629	1	1861.3	86.4%	2	K.SLESLDTSLFAK.N	2
*	step06.19964.19964.2	4.1662	0.4613	2060.906	2061.4126	1	1141.1	68.8%	1	K.NLPLGWDGKPIPYWLYK.L	2

U	gi\|229892326\|ref\|NP_0	4	4	8.2%	466	53032	8.0	IQ domain-containing protein C isoform 2 [Homo sapiens]
U	gi\|229892328\|ref\|NP_0	4	4	7.0%	546	61966	8.4	IQ domain-containing protein C isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.18228.18228.2	2.3988	0.2566	1947.211	1947.0812	28	294.6	31.0%	1	R.RQFQSLRAEY#EAIVR.E	2
3	step02.5540.5540.2	2.2565	0.1494	2865.117	2865.0005	6	142.7	23.9%	1	R.TQLSALY#EDSNIKEMS#PRKLDHK.E	2
3	step02.5540.5540.2	2.2564	0.1494	2865.117	2865.0005	6	142.7	23.9%	1	R.T#QLSALYEDSNIKEMS#PRKLDHK.E	2
3	step02.5540.5540.2	2.2564	0.1494	2865.117	2865.0005	6	142.7	23.9%	1	R.TQLS#ALYEDSNIKEMS#PRKLDHK.E	2

gi|310110750|ref|XP_0

8.2%

219

25125

6.7

PREDICTED: splicing factor U2AF 35 kDa subunit-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.16586.16586.3	4.853	0.5002	2116.039	2115.3357	1	935.3	44.1%	2	R.WFNGQPIHAELSPVTDFR.G	3 3 3 3
	step05.16565.16565.2	5.6525	0.5368	2116.622	2115.3357	1	1393.7	70.6%	3	R.WFNGQPIHAELSPVTDFR.G	2 2 2 2

Similarities: gi|5803207|ref|NP_006(2:0)
gi|68800138|ref|NP_00(2:0)
gi|68800128|ref|NP_00(2:0)

gi|156616275|ref|NP_0

8.1%

1107

123631

7.0

DNA polymerase delta catalytic subunit [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15426.15426.2	2.3083	0.1089	2608.399	2608.529	62	162.6	17.0%	1	R.VAGLCS#NIRDSS#FQS#KQTGRR.D	2
*	step05.17266.17266.2	2.39	0.3401	1305.521	1305.5479	1	335.2	68.2%	1	R.VTGVPLSYLLSR.G	2
*	step06.21602.21602.2	3.4054	0.4233	1537.746	1537.829	1	1077.1	76.9%	2	K.GLLPQILENLLSAR.K	2
*	step04.16090.16090.2	3.1322	0.3187	1669.208	1669.8214	1	1069.2	78.6%	1	R.EAADWVSGHFPSPIR.L	2
*	step05.18048.18048.2	2.4291	0.435	1243.523	1243.5181	1	965.5	88.9%	1	K.VYFPYLLISK.K	2
*	step02.18114.18114.2	2.7444	0.1547	1920.647	1920.3253	76	270.3	35.3%	1	R.CKTVLTGKVGGLLAFAKR.R	2

gi|6598323|ref|NP_001

8.1%

445

50663

6.5

rab GDP dissociation inhibitor beta isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17541.17541.2	2.7861	0.0975	2178.358	2179.1392	8	282.2	23.8%	1	R.Y#LDFKVT#EGSFVY#KGGK.I	2
	step05.18302.18302.2	5.5648	0.5988	2141.849	2142.441	1	1526.7	75.0%	2	K.SPYLYPLYGLGELPQGFAR.L	2 2

Similarities: gi|169646441|ref|NP_0(1:1)

gi|46852178|ref|NP_06

8.1%

381

41945

5.7

E3 ubiquitin-protein ligase KCMF1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.368.368.2	5.6627	0.492	1830.71	1830.0963	1	3262.3	78.1%	4	R.EAMDPIAELLSQLSGVR.R	2
*	step02.20439.20439.2	5.1141	0.4282	1846.685	1846.0957	1	1966.8	65.6%	2	R.EAM*DPIAELLSQLSGVR.R	2
*	step06.21601.21601.2	3.9724	0.3042	1619.732	1618.942	1	1736.5	76.9%	3	R.SLFVQELLLSTLVR.E	2

U	gi\|10440560\|ref\|NP_06	2	3	8.1%	136	15404	11.1	histone H3.1 [Homo sapiens]
U	gi\|53793688\|ref\|NP_00	2	3	8.1%	136	15388	11.3	histone H3.2 [Homo sapiens]
U	gi\|4504299\|ref\|NP_003	2	3	8.1%	136	15508	11.1	histone H3.1t [Homo sapiens]
U	gi\|4504297\|ref\|NP_003	2	3	8.1%	136	15404	11.1	histone H3.1 [Homo sapiens]
U	gi\|4504287\|ref\|NP_003	2	3	8.1%	136	15404	11.1	histone H3.1 [Homo sapiens]
U	gi\|4504285\|ref\|NP_003	2	3	8.1%	136	15404	11.1	histone H3.1 [Homo sapiens]
U	gi\|4504281\|ref\|NP_003	2	3	8.1%	136	15404	11.1	histone H3.1 [Homo sapiens]
U	gi\|31742503\|ref\|NP_06	2	3	8.1%	136	15388	11.3	histone H3.2 [Homo sapiens]
U	gi\|21071021\|ref\|NP_00	2	3	8.1%	136	15404	11.1	histone cluster 1, H3d [Homo sapiens]
U	gi\|183076548\|ref\|NP_0	2	3	8.1%	136	15388	11.3	histone H3.2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.6044.6044.1	2.0616	0.1561	850.533	850.93884	1	248.6	83.3%	2	R.EIAQDFK.T	1 1
	step02.8356.8356.2	2.5228	0.2848	1336.343	1336.4757	1	740.7	85.0%	1	R.EIAQDFKTDLR.F	2 2

Similarities: gi|4504279|ref|NP_002(2:0)

gi|145580615|ref|NP_0

709

83252

5.2

protein KRI1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16703.16703.2	4.397	0.4462	1495.911	1495.6147	1	1706.3	81.8%	1	K.AQEEADYIEWLK.G	2
*	step02.20552.20552.2	2.7376	0.182	2569.197	2568.607	4	425.3	23.8%	1	K.RQVFKS#LCREEAETPAEAT#GK.P	2
*	step05.16397.16397.2	3.5067	0.4155	1637.634	1637.9191	1	1142.1	71.4%	2	R.LLGPTVMLGGCEFSR.Q	2
*	step05.15148.15148.2	2.8358	0.3942	1654.548	1653.9185	1	368.6	53.6%	2	R.LLGPTVM*LGGCEFSR.Q	2
*	step05.14226.14228.2	3.0103	0.3278	988.286	988.16504	1	859.7	87.5%	1	R.LQAFGLNPK.R	2

gi|116089325|ref|NP_0

624

71650

10.2

splicing factor, arginine/serine-rich 12 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.20240.20240.2	3.7609	0.2367	1554.075	1554.7684	1	1683.0	83.3%	2	R.TLFSFLGEIEELR.L	2
	step02.19028.19028.2	5.5412	0.5583	2490.388	2490.7498	1	871.9	52.4%	2	R.TVYVGNLNSQTTTADQLLEFFK.Q	2 2
	step06.19231.19231.2	4.6844	0.4663	1637.702	1636.9426	1	1249.3	67.9%	3	R.ALAFNGVMFGDRPLK.I	2 2

Similarities: gi|21040255|ref|NP_63(2:1)

gi|294774572|ref|NP_8

603

66617

5.1

serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform c [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.15668.15668.2	3.5393	0.4891	1518.121	1518.6831	1	1614.8	79.2%	5	R.TSACGLFSVCYPR.A	2 2 2
step03.17349.17349.2	5.0076	0.3881	1944.164	1943.2277	1	1313.5	59.4%	2	R.LNIISNLDCVNEVIGIR.Q	2 2 2 2
step02.19577.19577.2	4.2503	0.5229	1926.68	1926.2004	1	999.5	67.6%	2	R.QLSQSLLPAIVELAEDAK.W	2 2 2 2

Similarities: gi|21361399|ref|NP_05(3:0)
gi|294774574|ref|NP_0(3:0)
gi|294774576|ref|NP_0(2:1)

gi|94681057|ref|NP_00

477

53199

9.0

tyrosyl-tRNA synthetase, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18887.18887.2	2.3375	0.0939	2659.185	2659.739	33	119.0	16.5%	1	K.LTGEDVFGIT#VPLITS#TT#GAKLGK.S	2
*	step04.18531.18531.2	3.5822	0.3938	1777.526	1777.9998	1	1114.9	73.1%	1	R.DKTSPFELYQFFVR.Q	2

gi|169646441|ref|NP_0

400

45619

6.2

rab GDP dissociation inhibitor beta isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16356.16356.2	2.579	0.0852	1504.727	1503.8115	2	815.8	62.5%	1	K.FLMANGLMGLFEK.R	2
	step05.18302.18302.2	5.5648	0.5988	2141.849	2142.441	1	1526.7	75.0%	2	K.SPYLYPLYGLGELPQGFAR.L	2 2

Similarities: gi|6598323|ref|NP_001(1:1)

gi|5032069|ref|NP_005

424

44386

8.6

splicing factor 3B subunit 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.7797.7797.2	2.9254	0.4893	1509.647	1509.5999	1	1529.3	73.1%	2	R.NQDATVYVGGLDEK.V	2
*	step02.18093.18093.2	6.3205	0.6019	2187.937	2187.392	1	2233.1	68.4%	2	K.NLDVGANIFIGNLDPEIDEK.L	2

gi|7661958|ref|NP_055

920

106122

10.0

bcl-2-associated transcription factor 1 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15947.15947.2	2.9492	0.3103	2032.994	2033.0507	1	307.1	37.5%	1	R.AEGEWEDQEALDYFSDK.E	2 2 2
step05.15790.15790.2	2.4819	0.0906	1652.946	1653.7965	1	525.8	61.1%	1	K.LKDLFDYS#PPLHK.N	2 2 2
step04.13525.13525.2	3.4274	0.321	1812.617	1813.069	1	650.2	62.5%	1	K.MAPVPLDDSNRPASLTK.D	2 2 2 2
step04.13089.13089.2	2.8761	0.3047	1828.515	1829.0684	1	397.3	56.2%	5	K.M*APVPLDDSNRPASLTK.D	2 2 2 2
step06.18214.18214.2	3.1388	0.3016	1168.466	1168.4111	1	1149.0	85.0%	2	R.LLASTLVHSVK.K	2 2 2 2
step05.19902.19902.2	2.3141	0.131	1924.38	1923.9131	170	113.3	25.0%	1	K.S#AAM*T#LNERFTSYQK.A	2 2 2

Similarities: gi|117938251|ref|NP_0(6:0)
gi|310112868|ref|XP_0(5:1)
gi|117938254|ref|NP_0(4:2)

U	gi\|109809739\|ref\|NP_0	3	3	7.9%	582	66899	9.6	la-related protein 7 [Homo sapiens]
U	gi\|109809741\|ref\|NP_0	3	3	7.9%	582	66899	9.6	la-related protein 7 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.13422.13422.2	3.0114	0.3961	1597.677	1597.7534	1	1441.8	69.2%	1	K.AIEFLNNPPEEAPR.K	2
step06.24013.24013.2	2.2995	0.1127	1899.792	1899.9747	1	314.4	41.7%	1	R.SSSEDAES#LAPRSKVKK.I	2
step05.14582.14582.2	2.7603	0.3122	1516.488	1516.7666	1	757.2	67.9%	1	K.VNATGPQFVSGVIVK.I	2

gi|51479192|ref|NP_00

406

42429

5.6

E3 ubiquitin-protein ligase RING1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17410.17410.2	5.022	0.5427	1948.561	1948.3246	1	2278.1	80.0%	1	R.SLHSELMCPICLDMLK.N	2 2
	step05.16528.16528.2	2.2173	0.1443	1964.006	1964.3241	5	362.6	40.0%	1	R.SLHSELMCPICLDM*LK.N	2 2
*	step04.14907.14907.2	3.6893	0.5262	1782.438	1782.9363	1	1589.7	73.3%	1	R.LHNQQALSSSIEEGLR.M	2

Similarities: gi|6005747|ref|NP_009(2:1)

gi|15082234|ref|NP_14

381

41943

8.6

L-lactate dehydrogenase A-like 6B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13544.13544.2	2.3204	0.1602	1614.603	1613.7606	1	459.6	44.4%	1	-.M*SWTVPVVRAS#QR.V	2
*2	step06.21377.21377.2	5.4009	0.5934	1945.548	1945.3334	1	1871.1	81.2%	5	K.LIIVSNPVDILTYVAWK.L	2

gi|5901926|ref|NP_008

227

26227

8.8

cleavage and polyadenylation specificity factor subunit 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12010.12010.2	2.5634	0.1939	1754.516	1753.8885	13	135.4	40.6%	1	K.LPGGELNPGEDEVEGLK.R	2
*	step03.7893.7893.2	4.3936	0.4719	1909.76	1910.0748	1	922.5	58.8%	1	K.LPGGELNPGEDEVEGLKR.L	2

gi|20270337|ref|NP_62

7.8%

666

75404

4.5

RNA polymerase-associated protein LEO1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8397.8397.1	2.22	0.1086	827.51	827.98834	6	690.3	83.3%	1	R.IEVEIPK.V	1
*	step02.15508.15509.2	4.8522	0.4321	1498.8	1498.6617	1	1490.4	83.3%	2	K.VNTDLGNDLYFVK.L	2
*	step05.15999.15999.2	2.5659	0.3015	1172.574	1172.3584	4	793.2	72.2%	3	K.LPNFLSVEPR.P	2
*	step02.17160.17160.2	3.3333	0.4634	2782.641	2783.828	1	1097.2	54.8%	1	R.PFDPQYYEDEFEDEEMLDEEGR.T	2

gi|27597061|ref|NP_05

7.7%

1755

200537

6.2

E3 ubiquitin-protein ligase UBR2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14001.14001.2	3.0913	0.4114	1407.361	1407.5424	1	1904.5	87.5%	2	R.SLLECSAEEIAGK.W	2 2
	step02.13389.13389.2	2.6877	0.403	1104.305	1104.2408	1	902.2	93.8%	1	K.WLQATDLTR.E	2 2
	step05.18138.18138.2	3.2809	0.428	1246.369	1246.439	1	1403.1	88.9%	1	R.TYNIFAITFR.Y	2 2
*	step04.335.335.2	4.0169	0.5074	1542.57	1542.7993	1	2278.9	87.5%	1	K.FLEGFDAFLELLK.C	2
*	step06.17942.17942.2	2.4197	0.3299	1008.53	1008.19946	2	559.2	75.0%	1	K.VSIHLPVSR.L	2
*	step03.12088.12090.2	2.5583	0.2856	1718.666	1718.8922	1	596.4	76.7%	1	R.FSPGVGQVNATDEIKR.E	2
*	step03.16263.16263.2	2.3372	0.204	2577.014	2577.8062	5	188.0	36.4%	1	K.SLPEDENKETGM*ESVIEAVAHFK.K	2
*	step04.18268.18268.2	3.0048	0.4118	2280.871	2281.6104	1	522.7	44.7%	1	K.IPYSESIKEMLTTFGTATYK.V	2
*	step02.17968.17968.2	6.2401	0.664	2512.046	2511.7625	1	1765.6	61.9%	2	K.LINLPEDYSSLINQASNFSCPK.S	2

Similarities: gi|296317280|ref|NP_0(3:6)

U	gi\|94557299\|ref\|NP_99	3	5	7.7%	574	65523	8.2	5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform 2 [Homo sapiens]
U	gi\|94557301\|ref\|NP_00	3	5	7.9%	559	64009	8.1	5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.19391.19391.2	3.1005	0.4243	1748.448	1749.003	1	1078.7	65.6%	2	K.IGHYILGDTLGVGTFGK.V	2
step02.9659.9659.2	4.0285	0.4059	1766.485	1766.8839	1	872.8	59.4%	2	R.TSCGSPNYAAPEVISGR.L	2
step04.15513.15513.2	3.0932	0.3989	1128.795	1129.3335	1	1287.3	88.9%	1	R.VPFLVAETPR.A	2

U	gi\|56118219\|ref\|NP_00	4	6	7.7%	556	61843	8.3	insulin-like growth factor 2 mRNA-binding protein 2 isoform b [Homo sapiens]
U	gi\|64085377\|ref\|NP_00	4	6	7.2%	599	66121	8.5	insulin-like growth factor 2 mRNA-binding protein 2 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step06.20116.20116.2	3.6831	0.5203	1457.085	1456.7975	1	786.1	80.8%	1	R.ILVPTQFVGAIIGK.E	2 2
	step02.17008.17008.2	2.8157	0.1776	1850.827	1850.0626	2	322.9	46.7%	1	K.ITISSLQDLSIYNPER.T	2
	step04.15348.15348.2	4.1019	0.4981	1432.453	1431.7251	1	944.8	70.8%	2	R.MVIITGPPEAQFK.A	2 2 2 2
	step04.14214.14214.2	3.6978	0.1416	1448.453	1447.7245	1	1370.1	75.0%	2	R.M*VIITGPPEAQFK.A	2 2 2 2

Similarities: gi|238624257|ref|NP_0(2:2)
gi|56237027|ref|NP_00(2:2)
gi|30795212|ref|NP_00(3:1)

U	gi\|188497696\|ref\|NP_0	2	7	7.7%	443	51710	6.4	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform a [Homo sapiens]
U	gi\|4758954\|ref\|NP_004	2	7	7.7%	443	51710	6.4	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform a [Homo sapiens]
U	gi\|32307121\|ref\|NP_85	2	7	7.9%	432	50371	6.6	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform d [Homo sapiens]
U	gi\|32307119\|ref\|NP_85	2	7	8.0%	423	49333	6.7	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform c [Homo sapiens]
U	gi\|32307117\|ref\|NP_85	2	7	7.6%	446	52017	7.0	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform b [Homo sapiens]
U	gi\|32307115\|ref\|NP_85	2	7	7.7%	443	51710	6.4	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform a [Homo sapiens]
U	gi\|32307113\|ref\|NP_85	2	7	7.7%	443	51710	6.4	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.16209.16209.2	3.7279	0.5167	2453.801	2454.5881	1	1391.9	57.9%	2	R.GEYNVYSTFQSHEPEFDYLK.S	2 2 2
	step03.117.117.2	4.6826	0.5106	1560.604	1559.742	1	2774.5	88.5%	5	R.SFFSEIISSISDVK.F	2 2 2

Similarities: gi|51093851|ref|NP_06(2:0)
gi|294832006|ref|NP_0(2:0)

U	gi\|20544168\|ref\|NP_00	3	7	7.7%	207	22019	11.7	histone H1t [Homo sapiens]
U	gi\|4885373\|ref\|NP_005	3	7	7.4%	215	21842	11.0	histone H1.1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.10629.10629.2	2.6867	0.2611	1235.92	1236.3992	1	1040.5	77.3%	1	K.KALAAAGYDVEK.N	2 2
step02.7704.7704.2	2.9611	0.555	1107.937	1108.2263	1	1198.1	85.0%	1	K.ALAAAGYDVEK.N	2 2
step03.9610.9610.2	4.003	0.5379	1579.601	1579.6965	1	1451.4	75.0%	5	K.ALAAAGYDVEKNNSR.I	2 2

Similarities: gi|4885375|ref|NP_005(3:0)

gi|7657441|ref|NP_055

7.7%

181

20630

8.9

28 kDa heat- and acid-stable phosphoprotein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14851.14851.2	4.1209	0.4532	1554.836	1554.7301	1	1684.3	76.9%	2	R.KGVEGLIDIENPNR.V	2
*	step02.14184.14184.2	2.5146	0.2734	1426.503	1426.5573	1	1587.4	79.2%	2	K.GVEGLIDIENPNR.V	2

gi|4506701|ref|NP_001

7.7%

143

15808

10.5

40S ribosomal protein S23 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16578.16578.1	1.9754	0.1421	1190.736	1191.4447	20	431.1	60.0%	2	K.VANVSLLALYK.G	1
*	step04.16525.16526.2	4.2091	0.4887	1191.771	1191.4447	1	1569.7	90.0%	5	K.VANVSLLALYK.G	2

U	gi\|223278379\|ref\|NP_0	6	7	7.6%	1297	143702	8.8	RRP12-like protein isoform 1 [Homo sapiens]
U	gi\|223278381\|ref\|NP_0	6	7	8.0%	1236	137114	8.7	RRP12-like protein isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.21479.21479.2	5.5319	0.5885	1847.427	1847.1882	1	1388.0	73.3%	2	R.LGFFTTYFLPLANTLK.S	2
step02.19432.19432.2	2.3951	0.2756	2474.098	2472.8257	83	154.6	25.0%	1	K.NFLPILFNLYGQPVAAGDTPAPR.R	2
step02.20360.20360.2	3.677	0.4224	2156.057	2156.499	1	359.2	42.5%	1	R.LSVLDLVVALAPCADEAAISK.L	2
step02.20382.20382.3	3.8214	0.2913	2157.205	2156.499	1	1210.6	38.8%	1	R.LSVLDLVVALAPCADEAAISK.L	3
step04.16750.16750.3	4.2274	0.3778	2852.162	2853.2131	1	948.6	35.0%	1	R.VLEEVCASPQGPGALFVQSHLEDLKK.T	3
step06.17645.17645.2	2.3333	0.3046	1532.777	1532.7278	1	408.0	66.7%	1	K.GRPDPYAYIPLNR.S	2

gi|4826686|ref|NP_004

7.6%

740

82432

7.2

ATP-dependent RNA helicase DDX1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.407.407.2	2.6476	0.3646	1879.993	1880.2166	1	302.9	53.1%	2	K.TGAFSIPVIQIVYETLK.D	2
*	step02.19595.19595.2	5.6368	0.6652	2373.848	2373.603	1	1819.2	65.0%	1	R.FLVLDEADGLLSQGYSDFINR.M	2
*	step02.19599.19599.3	6.0366	0.4432	2374.727	2373.603	1	3204.7	47.5%	2	R.FLVLDEADGLLSQGYSDFINR.M	3
*	step06.20040.20040.2	4.6445	0.5754	2134.773	2135.41	1	1558.6	67.6%	1	K.EAQTSFLHLGYLPNQLFR.T	2

gi|32189376|ref|NP_05

7.6%

581

66146

7.9

activating signal cointegrator 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14199.14199.2	2.6833	0.3017	912.939	913.055	2	522.5	91.7%	2	K.FVNLYTR.E	2
*	step02.15402.15402.2	4.3714	0.5928	2448.783	2449.5251	1	1515.7	60.0%	1	R.TQVIDDESDYFASDSNQWLSK.L	2
*	step05.16442.16442.2	4.097	0.4104	1854.816	1855.0027	1	1095.6	63.3%	2	R.SSGFGLEFNSFQHQLR.I	2

gi|22547134|ref|NP_05

7.6%

423

48118

8.6

39S ribosomal protein L37, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17728.17728.2	2.7957	0.2625	1965.481	1966.2515	1	570.3	60.0%	1	R.ETYCPVIVDNLIQLCK.S	2
*	step02.8544.8544.2	4.3974	0.5767	1683.826	1683.8878	1	1721.9	80.0%	2	K.VLEQPVVVQSVGTDGR.V	2

U	gi\|4506621\|ref\|NP_000	2	3	7.6%	145	17258	10.6	60S ribosomal protein L26 [Homo sapiens]
U	gi\|7705813\|ref\|NP_057	2	3	7.6%	145	17256	10.6	60S ribosomal protein L26-like 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.17812.17812.2	3.2553	0.2978	1359.411	1358.548	1	953.4	85.0%	1	-.M*KFNPFVTSDR.S	2
	step03.14370.14370.2	2.6685	0.2743	1083.404	1083.1786	1	599.5	93.8%	2	K.FNPFVTSDR.S	2

gi|24307991|ref|NP_05

2517

281227

5.5

cullin-9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19349.19349.2	3.5206	0.3739	2302.804	2303.5564	1	591.6	47.6%	2	R.DPGGLDEVAMGEMEADVQALVR.R	2
*	step03.400.400.2	4.4156	0.4821	1923.406	1924.208	1	1944.9	71.9%	2	R.ELEFSM*AVGNLISELVR.S	2
	step02.13796.13796.2	5.7196	0.4839	1976.447	1977.0521	1	2460.4	87.5%	3	R.MLDDYEEISAGDEGEFR.Q	2 2
*	step02.15902.15902.2	2.3168	0.1677	1745.758	1745.6145	12	464.5	32.1%	1	K.Y#GLLS#NEPSSSSTSR.N	2
*	step04.15247.15247.2	4.1367	0.4301	1399.535	1399.6611	1	2183.9	80.8%	2	K.TSVLVQQAGLAALK.M	2
*	step04.18343.18343.2	5.0978	0.3747	1600.926	1599.8988	1	1480.8	83.3%	4	R.LQQETQPFLLLLR.T	2
	step06.20086.20086.2	2.7652	0.3499	1072.892	1073.3148	1	396.8	85.7%	1	R.FWPIIQIR.I	2 2
*	step05.13776.13776.2	2.5541	0.2074	900.095	900.09436	2	788.6	91.7%	2	R.LLQLCPR.L	2
	step02.11870.11870.2	3.6154	0.3528	1375.467	1375.5087	1	620.4	87.5%	1	R.FLPDDEAAQALGK.T	2 2
*	step06.16349.16349.2	2.8373	0.2423	1396.689	1395.5862	1	715.0	61.5%	1	R.SPAPSPVLPSSSLR.N	2
*	step03.10484.10484.2	2.4706	0.2034	802.52	801.91266	1	617.1	91.7%	1	R.APDFVPR.Y	2
*	step02.17268.17268.2	2.9569	0.0861	2085.595	2084.339	45	216.6	27.5%	1	R.AIVSS#PEVISKYEKALLR.G	2
*	step06.14538.14538.2	2.992	0.487	1202.408	1202.3877	1	1029.2	85.0%	4	R.VSAIHEVPPPR.S	2
*	step06.18982.18982.2	3.1502	0.4216	1512.018	1512.738	1	971.8	79.2%	2	R.LLAILQHSAQDFR.V	2

Similarities: gi|270265835|ref|NP_0(3:11)

gi|21361499|ref|NP_05

574

65010

8.6

sentrin-specific protease 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.9627.9627.2	3.1965	0.3861	1618.749	1617.7017	1	808.6	55.9%	2	K.SGGGFGPDPGSGTTVPAR.R	2
*	step03.18345.18345.2	4.3979	0.516	1416.234	1415.6841	1	2152.3	80.8%	2	R.LGLLGALMAEDGVR.G	2
*	step06.19957.19957.2	3.1247	0.5204	1451.488	1451.6085	1	759.9	80.0%	2	K.VHFFNSFFYDK.L	2

gi|21264355|ref|NP_00

411

46649

4.9

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.7961.7961.2	4.4124	0.4881	2247.755	2247.3115	1	557.2	47.1%	1	R.DLTDEEKQEYLNEYEAEK.I	2
*	step02.7766.7766.2	2.4571	0.2633	1400.47	1400.5198	1	723.5	66.7%	1	K.IAAEIAQAEEQAR.K	2

U	gi\|310114661\|ref\|XP_0	4	33	7.5%	358	41049	4.9	PREDICTED: protein SET-like [Homo sapiens]
U	gi\|310127914\|ref\|XP_0	4	33	7.5%	358	41049	4.9	PREDICTED: protein SET-like [Homo sapiens]
U	gi\|310119431\|ref\|XP_0	4	33	7.0%	385	43809	4.7	PREDICTED: protein SET-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.7164.7164.2	3.7964	0.3978	1209.415	1209.3274	1	1053.9	88.9%	29	R.VEVTEFEDIK.S	2 2 2
step02.12539.12539.1	2.2956	0.0915	1209.739	1209.3274	6	678.0	66.7%	1	R.VEVTEFEDIK.S	1 1 1
step02.13983.13983.2	3.7541	0.439	1672.632	1672.8171	1	1088.8	76.9%	2	R.VEVTEFEDIKSGYR.V	2 2 2
step02.7728.7728.1	2.9703	0.1484	1446.74	1446.5038	2	527.7	70.8%	1	K.EFHLNESGNPSSK.S	1

Similarities: gi|170763498|ref|NP_0(3:1)
gi|170763500|ref|NP_0(3:1)

U	gi\|226052117\|ref\|NP_0	2	3	7.5%	293	32029	5.7	heterogeneous nuclear ribonucleoprotein C-like [Homo sapiens]
U	gi\|61966711\|ref\|NP_00	2	3	7.5%	293	32142	5.1	heterogeneous nuclear ribonucleoprotein C-like 1 [Homo sapiens]
U	gi\|282396082\|ref\|NP_0	2	3	7.5%	293	32053	5.4	heterogeneous nuclear ribonucleoprotein C-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.16540.16540.2	3.1288	0.3349	1317.604	1317.6018	1	1245.4	77.3%	2	R.VFIGNLNTLVVK.K	2 2 2
	step02.15180.15180.2	2.4655	0.3503	1160.72	1160.2996	3	528.7	77.8%	1	K.VDSLLENLEK.I	2 2 2

Similarities: gi|117190174|ref|NP_0(2:0)
gi|117189975|ref|NP_1(2:0)

gi|4503659|ref|NP_001

133

14390

10.2

ubiquitin-like protein fubi and ribosomal protein S30 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15264.15264.1	2.2857	0.3085	1107.651	1108.3143	1	481.2	72.2%	2	R.FVNVVPTFGK.K	1
*	step05.15249.15249.2	2.784	0.3792	1108.095	1108.3143	1	850.1	83.3%	2	R.FVNVVPTFGK.K	2

gi|10835067|ref|NP_00

7.4%

408

46837

7.1

lupus La protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17284.17284.2	5.1827	0.5912	2072.991	2073.289	1	3144.1	83.3%	1	K.ICHQIEYYFGDFNLPR.D	2
*	step02.19102.19102.2	4.2692	0.585	1551.031	1550.7782	1	1088.3	76.9%	1	R.LTTDFNVIVEALSK.S	2

gi|14110407|ref|NP_11

7.4%

420

46437

9.6

heterogeneous nuclear ribonucleoprotein D-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16509.16509.2	3.3653	0.3669	1470.415	1470.7183	1	1762.5	87.5%	1	K.MFIGGLSWDTSKK.D	2
2	step02.8010.8010.2	3.4091	0.431	1169.094	1168.3151	1	1138.0	88.9%	1	R.FGEVVDCTIK.T	2 2 2
	step05.18005.18005.1	1.8947	0.1588	914.587	915.11255	1	691.4	78.6%	2	R.GFGFVLFK.D	1 1
	step05.18018.18018.2	3.048	0.3606	915.541	915.11255	1	713.8	92.9%	2	R.GFGFVLFK.D	2 2

Similarities: gi|14110414|ref|NP_00(3:1)
gi|55956919|ref|NP_11(1:3)

gi|5729790|ref|NP_006

727

82785

7.0

transcriptional repressor CTCF isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16726.16726.2	3.2495	0.4199	2682.905	2683.067	1	435.0	37.0%	2	K.EGLAESEPMICHTLPLPEGFQVVK.V	2
*	step05.14340.14340.2	5.2786	0.543	1851.586	1851.0309	1	1416.1	80.8%	2	K.KTFQCELCSYTCPR.R	2
	step05.15221.15221.2	4.0381	0.5457	1752.78	1752.9437	1	1000.8	75.0%	2	R.YHDPNFVPAAFVCSK.C	2

gi|40217805|ref|NP_07

702

79277

9.2

nucleolar protein 9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13947.13947.2	3.3171	0.4456	1327.945	1328.5016	1	1892.0	81.8%	1	R.LLQAQAAGVDWR.E	2
*	step03.16912.16912.3	3.7408	0.4465	2753.283	2752.9692	1	652.8	30.2%	1	R.LAAFADALEFADEEKESPVEFTGHK.L	3
*	step06.18782.18782.2	3.7397	0.2528	1678.494	1677.968	1	1200.8	69.2%	2	R.LYHILTPVPPEELR.T	2

gi|4758138|ref|NP_004

614

69148

8.9

probable ATP-dependent RNA helicase DDX5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12010.12010.2	2.5262	0.3606	1390.537	1390.4851	1	792.1	75.0%	1	K.NFYQEHPDLAR.R	2
*	step02.14127.14127.2	2.5217	0.1227	1794.284	1793.9525	93	194.0	39.3%	1	R.ELAQQVQQVAAEYCR.A	2
	step02.16050.16050.2	3.4512	0.5056	1337.591	1337.5938	1	1911.2	90.0%	2	R.MLDMGFEPQIR.K	2 2 2 2
*	step02.13188.13188.1	2.0525	0.3078	986.156	986.14746	1	410.7	78.6%	1	K.LLQLVEDR.G	1

Similarities: gi|301171467|ref|NP_0(1:3)
gi|13514809|ref|NP_00(1:3)
gi|148613856|ref|NP_0(1:3)

gi|21040255|ref|NP_63

508

59380

10.4

splicing factor, arginine/serine-rich 12 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.19028.19028.2	5.5412	0.5583	2490.388	2490.7498	1	871.9	52.4%	2	R.TVYVGNLNSQTTTADQLLEFFK.Q	2 2
	step06.19231.19231.2	4.6844	0.4663	1637.702	1636.9426	1	1249.3	67.9%	3	R.ALAFNGVMFGDRPLK.I	2 2

Similarities: gi|116089325|ref|NP_0(2:0)

gi|296317280|ref|NP_0

439

49978

5.5

E3 ubiquitin-protein ligase UBR2 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.14001.14001.2	3.0913	0.4114	1407.361	1407.5424	1	1904.5	87.5%	2	R.SLLECSAEEIAGK.W	2 2
step02.13389.13389.2	2.6877	0.403	1104.305	1104.2408	1	902.2	93.8%	1	K.WLQATDLTR.E	2 2
step05.18138.18138.2	3.2809	0.428	1246.369	1246.439	1	1403.1	88.9%	1	R.TYNIFAITFR.Y	2 2

Similarities: gi|27597061|ref|NP_05(3:0)

gi|4506133|ref|NP_002

369

40926

7.4

phosphoribosyl pyrophosphate synthase-associated protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17567.17567.2	2.932	0.4159	1484.676	1484.763	1	1094.4	79.2%	2	K.SIIGVIPYFPYSK.Q	2
*	step02.18071.18071.2	2.3933	0.1494	1663.001	1662.8702	1	552.0	57.7%	1	K.EIQGFFNIPVDNLR.A	2

gi|82659109|ref|NP_06

7.2%

5183

573849

6.0

E3 ubiquitin-protein ligase UBR4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19670.19670.2	4.5836	0.5261	2388.053	2388.659	1	825.2	50.0%	2	K.ELPQLVASVIESESEILHHEK.Q	2
*	step02.13332.13332.2	3.5366	0.339	2214.906	2214.4158	1	1279.5	55.3%	1	K.TLSDVEDQKELASPVSPELR.Q	2
*	step06.19907.19907.2	2.6093	0.1923	1295.0	1295.5481	1	1171.5	83.3%	2	R.VCLNLPYFLR.Y	2
*	step04.18529.18529.2	4.971	0.5203	1855.842	1856.155	1	1321.0	66.7%	2	K.LLTSLFQDLQVEALHK.G	2
*	step03.1080.1082.3	5.787	0.5008	2355.781	2355.6292	1	1804.0	44.0%	1	K.YDELYAALTALLAAGSQLDTVR.R	3
*	step04.19897.19897.2	5.6208	0.561	2038.62	2038.3325	1	2358.2	76.5%	6	K.NLLPATLQLIDTYASFTR.A	2
*	step02.14272.14272.2	2.9448	0.4512	1418.477	1418.5767	1	792.3	79.2%	2	R.ILGPAESDEFLAR.V	2
*	step03.11346.11346.2	3.1205	0.2997	1454.346	1454.6106	1	543.4	70.8%	2	R.AQQALSELHTVEK.A	2
*	step05.18587.18587.2	4.194	0.444	1199.513	1199.5083	1	2045.7	90.0%	2	K.ITVLQLSALLK.Q	2
*	step04.18997.18997.2	3.9218	0.241	1630.837	1629.9647	1	1291.6	76.9%	5	R.TTLEVLQLFPINIK.S	2
*	step03.11946.11946.2	2.5209	0.2491	1128.917	1129.2919	1	721.6	83.3%	1	R.IQIGTQAIER.A	2
*	step05.19946.19946.2	4.57	0.4686	2479.186	2479.815	1	809.2	54.3%	2	K.NAAQELATLLLSLPAPASVQQQSK.S	2
*	step05.19958.19958.3	4.198	0.4506	2480.035	2479.815	1	1525.6	45.7%	1	K.NAAQELATLLLSLPAPASVQQQSK.S	2 3
*	step03.7833.7833.3	5.3641	0.5807	2840.759	2841.8567	1	1366.7	34.2%	3	R.TSPADHGGSVGSESGGSAVDSVAGEHSVSGR.S	3
*	step05.14973.14973.2	2.4163	0.1407	1082.618	1082.3215	4	507.6	81.2%	1	R.LLQTLPQLR.N	2
*	step02.16229.16229.2	2.5694	0.2897	1218.5	1218.427	1	837.2	77.8%	1	K.LLEEQGIFLR.A	2
*	step04.19412.19412.2	3.5222	0.3501	1572.633	1572.8286	1	1461.4	73.1%	2	K.AAQFVDLLGYFSLK.T	2
*	step04.19226.19226.2	3.8468	0.5852	1866.288	1866.1483	1	785.4	53.1%	5	K.SLTGLLSSFVEVESIKR.H	2
*	step05.15186.15186.2	3.4708	0.4101	1918.185	1918.1871	1	652.5	55.9%	1	R.MPGNPYSSNEPGIGPLMR.D	2
*	step04.16976.16976.2	3.4984	0.3769	1588.266	1588.9126	1	1141.1	76.9%	2	K.IISLDLPVAEVYKK.V	2
*	step03.10773.10773.2	3.2304	0.3958	1946.187	1947.2354	1	503.8	53.1%	1	K.MAGVMAQCGGLECM*LNR.L	2
*	step05.15953.15953.2	3.0941	0.2071	1185.216	1184.3707	1	1139.4	90.0%	1	R.SNPSVLQGLLR.I	2
*	step03.36.36.2	5.9268	0.5715	2358.678	2358.5881	1	2148.1	69.0%	2	K.LEQVSSDEGIGTLAENLLEALR.E	2
*	step04.16508.16508.2	5.0286	0.5923	2257.612	2256.451	1	908.3	57.9%	1	K.KVPTSNTEGGWSCSLAEYIR.H	2

gi|122937229|ref|NP_0

7.2%

869

96620

7.9

zinc finger protein 629 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14361.14361.2	2.8077	0.3371	1562.56	1561.6812	2	358.8	54.2%	1	K.SFIQSSELTQHQR.T	2
*	step06.17754.17754.2	2.6034	0.2707	1488.988	1489.6182	1	654.0	66.7%	1	K.SFSVSSNLINHQR.I	2
*	step04.15280.15280.2	2.8078	0.2691	1141.37	1141.3026	1	1466.3	94.4%	2	K.SSSVLLEHLR.S	2
*	step05.19244.19244.3	4.6366	0.4898	3075.212	3075.4915	1	621.1	28.8%	1	K.TLVEEKPYLCPECGAGFTEVAALLLHR.S	3

gi|303227928|ref|NP_0

7.2%

559

62576

6.0

matrin-3 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15179.15179.2	2.2145	0.2453	1145.422	1145.3596	1	550.9	75.0%	1	R.VVHIMDFQR.G	2 2
step05.16330.16330.2	4.6896	0.4006	1971.645	1970.2998	1	562.0	55.9%	3	R.IGPYQPNVPVGIDYVIPK.T	2 2
step02.14603.14603.2	3.7474	0.0969	1575.552	1574.75	1	1205.4	75.0%	1	K.LCSLFYTNEEVAK.N	2 2

Similarities: gi|21626466|ref|NP_06(3:0)

gi|9910280|ref|NP_064

7.1%

1555

177189

5.6

UDP-glucose:glycoprotein glucosyltransferase 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.20085.20085.2	3.842	0.6005	1483.775	1483.8846	1	1041.4	73.1%	4	R.ILASPVELALVVMK.D	2
*	step04.15361.15361.2	3.3908	0.4339	1575.306	1574.7631	1	533.9	75.0%	2	R.AIWAALQTQTSNAAK.N	2
*	step03.20587.20587.3	4.8449	0.5099	2926.719	2927.297	1	1046.9	38.5%	1	R.IIGPLEDSELFNQDDFHLLENIILK.T	3
*	step02.14764.14764.2	2.4544	0.3079	1247.324	1247.3374	1	854.6	87.5%	1	R.IEYQFFEDR.H	2
*	step02.17852.17852.2	2.8403	0.1798	1898.057	1897.0746	13	373.8	37.5%	1	K.EGETYFDVVAVVDPVTR.E	2
*	step02.16726.16726.2	3.4418	0.4104	1947.815	1948.1183	1	1028.6	75.0%	1	R.YVLEPEISFTSDNSFAK.G	2
*	step04.1281.1281.2	4.3217	0.2595	1632.439	1632.0222	1	1537.7	76.9%	1	K.ILFLDVLFPLVVDK.F	2

gi|197927448|ref|NP_0

7.1%

1151

125001

6.9

WD repeat-containing protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18448.18448.2	5.4442	0.5778	2229.256	2229.52	1	1698.7	57.5%	1	R.LLAGEGPDVLVYSLDFGGHLR.M	2
*	step02.19488.19488.2	3.7099	0.4017	1738.925	1737.9192	1	472.0	69.2%	1	R.SGLWNMSDWIWDAR.W	2
*	step04.15645.15645.2	2.385	0.3873	1052.447	1052.2424	1	821.1	77.8%	1	R.GLGVSALCFK.S	2
*	step04.14480.14480.2	2.5957	0.3801	960.734	961.0997	1	838.0	87.5%	2	K.AVTLAGSWR.L	2
*	step04.15896.15896.2	3.9792	0.5635	1969.627	1969.2701	1	820.5	72.2%	2	K.VVPINTPTAAVDQTLFPGK.V	2
*	step05.16907.16907.2	3.738	0.2835	1019.431	1018.2179	1	1149.8	87.5%	1	R.GMNWLAGLR.I	2

gi|42516572|ref|NP_29

7.1%

630

71670

5.1

E3 ubiquitin-protein ligase TRIM41 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15401.15401.2	4.4827	0.439	1237.809	1237.3441	1	2249.6	90.9%	1	K.SELAAVASEFGR.L	2 2
	step02.13677.13677.2	4.123	0.4282	1588.748	1588.7335	1	1955.5	80.8%	1	R.FSADCCVLGAQGFR.S	2 2
*	step03.12531.12531.2	4.9645	0.5433	2150.632	2151.3198	1	1151.9	61.1%	1	R.YQAQSSTEQTLLSPSEKPR.R	2

Similarities: gi|42516574|ref|NP_96(2:1)

gi|23111007|ref|NP_07

7.0%

300

33514

9.2

hypothetical protein LOC79018 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16402.16402.2	2.3476	0.3709	1151.316	1151.3376	1	837.2	87.5%	1	K.FLAFYQYAK.S	2
*	step05.13997.13997.2	2.2243	0.3304	1418.256	1417.5073	1	546.4	59.1%	1	K.SAASIEGYYYHR.S	2

gi|6005757|ref|NP_009

1047

119914

5.7

FACT complex subunit SPT16 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.20661.20661.3	6.2345	0.4853	3123.542	3123.523	1	3803.9	43.0%	1	R.TLMVDPSQEVQENYNFLLQLQEELLK.E	3
*	step02.15688.15688.2	3.3993	0.3679	1677.692	1677.8386	1	1040.9	78.6%	2	R.NEGNIFPNPEATFVK.E	2
*	step04.16118.16118.2	3.9262	0.4758	1827.665	1827.0339	1	708.2	75.0%	2	K.APGEQTVPALNLQNAFR.I	2
*	step02.11052.11052.2	2.4863	0.1641	1678.268	1678.766	6	490.1	48.7%	1	K.QDSLVINLNRS#NPK.L	2

gi|53831995|ref|NP_00

728

81678

5.3

splicing factor 3A subunit 1 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.16288.16288.2	3.843	0.448	1930.835	1932.0856	1	820.4	67.9%	1	K.FNFLNPNDPYHAYYR.H	2 2
step06.17321.17321.1	1.9048	0.1024	1646.882	1646.7874	7	151.9	42.4%	1	R.QFLT#QLM*QKEQR.N	1 1
step06.17814.17814.2	4.9996	0.512	2378.974	2378.7058	1	874.9	52.3%	3	K.ASKPLPPAPAPDEYLVSPITGEK.I	2 2

Similarities: gi|5032087|ref|NP_005(3:0)

gi|56550033|ref|NP_06

577

65125

4.8

protein SHQ1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.17650.17650.2	3.166	0.4677	1557.615	1557.8569	1	1091.4	64.3%	1	K.LAALAEALKEVSLTK.A	2
*	step02.20316.20316.3	4.7748	0.375	2711.105	2712.0432	1	2133.7	39.6%	2	K.AQLGLELEELEAAALLVQEEETALK.A	3

gi|88758580|ref|NP_11

520

58147

10.3

cyclin-L2 isoform A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.18974.18974.2	4.6649	0.3862	1612.446	1612.9324	1	2249.4	78.6%	1	R.VVGCELIQAAGILLR.L	2
*	step04.15616.15616.2	3.2238	0.3931	1999.712	2000.2412	1	659.8	57.5%	2	R.GLLPGGTQVLDGTSGFSPAPK.L	2

gi|24797065|ref|NP_03

495

55448

7.3

zinc finger protein 212 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.20480.20480.2	5.6694	0.3641	1860.904	1861.1765	1	3180.2	80.0%	3	K.WAVLGTLLQEYGLLQR.R	2 2
*	step06.20138.20138.2	2.32	0.0893	2368.194	2369.4177	1	429.7	33.3%	1	R.HQRIHTGERPYSCT#ECEK.S	2

Similarities: gi|25777704|ref|NP_73(1:1)

gi|4503571|ref|NP_001

434

47169

7.4

alpha-enolase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.16840.16840.2	3.9778	0.3934	1806.046	1806.0098	2	563.3	61.8%	1	R.AAVPSGASTGIYEALELR.D	2
*	step02.15843.15843.2	2.43	0.3269	1426.616	1426.5956	1	540.4	68.2%	1	R.YISPDQLADLYK.S	2

gi|24497435|ref|NP_00

406

45626

7.5

26S protease regulatory subunit 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step05.14366.14366.2	3.2167	0.3935	1159.371	1159.3596	1	1046.8	77.3%	1	K.GVLLYGPPGTGK.T	2 2
*	step02.19263.19263.2	4.8012	0.4823	1823.825	1824.0885	1	2293.8	73.3%	2	R.TMLELLNQLDGFEATK.N	2

Similarities: gi|24430151|ref|NP_00(1:1)

U	gi\|21361809\|ref\|NP_06	2	5	6.9%	390	42142	9.9	RNA binding motif protein, X-linked-like 1 [Homo sapiens]
U	gi\|56699409\|ref\|NP_00	2	5	6.9%	391	42332	10.1	heterogeneous nuclear ribonucleoprotein G isoform 1 [Homo sapiens]
U	gi\|258645150\|ref\|NP_0	2	5	13.8%	196	22172	5.3	heterogeneous nuclear ribonucleoprotein G isoform 2 [Homo sapiens]
U	gi\|242117971\|ref\|NP_0	2	5	6.9%	390	42142	9.9	RNA binding motif protein, X-linked-like 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14136.14136.2	3.8957	0.2974	1437.621	1436.592	1	1207.1	79.2%	3	K.LFIGGLNTETNEK.A	2
	step02.16992.16992.2	4.7113	0.4222	1488.543	1487.6375	1	1836.7	76.9%	2	R.GFAFVTFESPADAK.D	2

gi|4505941|ref|NP_000

6.8%

1174

133896

6.9

DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16086.16086.2	3.7534	0.3909	1598.852	1598.8213	1	975.6	73.1%	1	R.NLTYSAPLYVDITK.T	2
*	step05.16103.16103.2	2.5391	0.3151	827.261	827.0499	2	589.6	78.6%	1	R.LLLAALGR.R	2
*	step06.18980.18980.2	2.9277	0.3424	1246.666	1246.4404	1	851.8	75.0%	1	R.LTFASTLSHLR.R	2
*	step02.18134.18135.2	3.4334	0.3749	2214.714	2213.4512	1	787.8	50.0%	1	R.TSETGIVDQVMVTLNQEGYK.F	2
*	step05.14336.14336.2	3.914	0.4456	1487.332	1487.6389	1	1979.3	87.5%	2	R.DCQIAHGAAQFLR.E	2
*	step05.20007.20007.2	2.6506	0.201	1636.683	1637.0043	1	760.5	57.7%	2	K.LLFQELMSMSIAPR.M	2
*	step05.16449.16449.2	2.5574	0.2341	1668.747	1669.003	1	1150.2	73.1%	1	K.LLFQELMSMSIAPR.M	2

U	gi\|21361368\|ref\|NP_00	3	6	6.8%	795	87302	7.1	delta-1-pyrroline-5-carboxylate synthase isoform 1 [Homo sapiens]
U	gi\|62912457\|ref\|NP_00	3	6	6.8%	793	87089	7.1	delta-1-pyrroline-5-carboxylate synthase isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.562.562.2	3.9639	0.5279	2504.901	2504.7285	1	1077.3	52.2%	3	K.TDLLIVLSDVEGLFDSPPGSDDAK.L	2
step02.17866.17866.2	4.2336	0.5488	2029.835	2030.2657	1	1107.2	76.5%	2	K.LIDIFYPGDQQSVTFGTK.S	2
step03.20518.20518.2	3.944	0.5421	1462.642	1462.7393	1	1702.2	81.8%	1	R.TPLFDQIIDMLR.V	2

U	gi\|148613856\|ref\|NP_0	4	7	6.8%	731	80458	8.4	probable ATP-dependent RNA helicase DDX17 isoform 3 [Homo sapiens]
U	gi\|38201710\|ref\|NP_00	4	7	6.9%	729	80273	8.3	probable ATP-dependent RNA helicase DDX17 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.17114.17114.2	3.3437	0.3833	1479.185	1478.7404	1	764.4	75.0%	2	R.APLPDLYPFGTMR.G	2
step03.12793.12793.2	2.7696	0.2299	1361.322	1361.4869	1	656.6	80.0%	1	K.NFYVEHPEVAR.L	2
step02.12838.12838.2	3.558	0.4437	1692.722	1692.8083	1	1435.3	67.9%	2	R.ELAQQVQQVADDYGK.C	2
step02.16050.16050.2	3.4512	0.5056	1337.591	1337.5938	1	1911.2	90.0%	2	R.MLDMGFEPQIR.K	2 2 2 2

Similarities: gi|301171467|ref|NP_0(1:3)
gi|13514809|ref|NP_00(1:3)
gi|4758138|ref|NP_004(1:3)

gi|28195388|ref|NP_11

6.8%

637

71928

4.9

rab11 family-interacting protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13676.13676.2	2.6066	0.2393	1834.065	1833.187	1	658.9	61.5%	1	R.LKDEM*DLYKRMMDK.L	2
*	step03.18915.18915.3	3.9053	0.1422	3377.585	3377.451	82	585.6	16.1%	1	K.NLFAAQT#KAQS#LAAEIDT#ASRDELMEALK.E	3

gi|109948304|ref|NP_0

6.8%

513

57544

7.2

WD40 repeat-containing protein SMU1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16760.16760.2	2.7409	0.3682	1242.56	1242.4518	1	775.2	88.9%	2	R.YIHLENLLAR.S	2
*	step05.16629.16629.2	2.7153	0.2971	1058.735	1058.3634	1	1279.6	88.9%	2	R.LMALLGQALK.W	2
*	step04.11365.11365.2	4.3731	0.4097	1723.699	1723.0125	1	1712.7	71.4%	2	R.SNTVVIMNMQGQIVR.S	2

gi|19923142|ref|NP_00

876

97170

4.8

importin subunit beta-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18282.18282.2	5.0384	0.5567	1659.656	1659.9078	1	1043.5	75.0%	2	R.AAVENLPTFLVELSR.V	2
*	step04.14473.14473.2	2.8143	0.379	956.391	956.1645	1	757.2	81.2%	2	R.VAALQNLVK.I	2
*	step05.20166.20166.2	3.0521	0.3636	1760.506	1760.1105	1	648.2	60.0%	1	K.GALQYLVPILTQTLTK.Q	2
*	step06.22088.22088.2	5.9002	0.5144	2247.581	2247.5735	1	2632.6	72.2%	2	R.IQFNDLQSLLCATLQNVLR.K	2

gi|39812229|ref|NP_00

539

60666

5.1

importin subunit alpha-6 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.16094.16094.2	3.287	0.4921	1304.121	1304.4735	1	1302.1	85.0%	2	R.NAVWALSNLCR.G	2 2 2
step03.15580.15580.1	2.3615	0.2584	1375.5	1375.6184	1	318.8	55.0%	2	R.LVELLMHNDYK.V	1 1 1
step03.14578.14578.2	2.5889	0.2405	1391.62	1391.6178	1	833.2	75.0%	1	R.LVELLM*HNDYK.V	2 2 2
step04.17814.17814.2	4.9981	0.4234	1552.822	1552.8436	1	2598.8	84.6%	3	K.IVQVALNGLENILR.L	2 2 2

Similarities: gi|222144293|ref|NP_0(4:0)
gi|6912478|ref|NP_036(4:0)

gi|9945320|ref|NP_064

526

59634

10.7

cyclin-L1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14873.14873.2	2.8777	0.3658	2172.973	2173.3872	1	837.6	50.0%	1	R.LSPTPSMQDGLDLPSETDLR.I	2
*	step05.20390.20390.2	4.9827	0.4099	1640.511	1640.9858	1	2587.0	78.6%	1	R.ILGCELIQAAGILLR.L	2

U	gi\|19923485\|ref\|NP_05	2	3	6.7%	432	51466	9.8	luc7-like protein 3 [Homo sapiens]
U	gi\|52426743\|ref\|NP_00	2	3	6.7%	432	51466	9.8	luc7-like protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.17295.17295.2	3.8797	0.2921	1321.727	1321.5042	1	1486.9	85.0%	1	R.YLQSLLAEVER.R	2
	step04.10070.10070.2	4.5454	0.6016	1715.385	1715.8467	1	1271.5	61.8%	2	R.LALSQNQQSSGAAGPTGK.N	2

gi|4503475|ref|NP_001

463

50470

9.0

elongation factor 1-alpha 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.16241.16241.2	3.2175	0.4841	1315.76	1315.5427	1	558.0	81.8%	4	R.EHALLAYTLGVK.Q	2 2
step03.13389.13389.1	1.9176	0.1808	975.607	976.151	1	528.5	78.6%	1	R.LPLQDVYK.I	1 1
step03.13358.13358.2	2.6467	0.2547	976.277	976.151	1	445.8	85.7%	1	R.LPLQDVYK.I	2 2
step05.12908.12908.2	3.5255	0.4125	1026.397	1026.2148	1	1108.8	90.0%	2	K.IGGIGTVPVGR.V	2 2

Similarities: gi|4503471|ref|NP_001(4:0)

gi|38569394|ref|NP_00

6.6%

1332

150254

5.9

elongator complex protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12271.12271.2	2.7572	0.334	1589.614	1589.728	1	969.0	65.4%	1	R.DIQGPGNPQCFSLR.T	2
*	step02.16061.16061.2	3.3728	0.4717	2275.058	2276.401	1	825.6	52.8%	1	K.DFEPILEQQIHQDDFGESK.F	2
*	step02.11199.11199.2	2.8977	0.2656	1803.974	1803.9076	6	432.1	46.4%	1	K.IQFENNEDQDVNPLK.L	2
*	step03.16408.16408.2	3.7518	0.4002	1418.73	1418.663	1	780.7	70.8%	1	K.SVVLQLADGQIFK.Y	2
*	step04.14794.14794.2	2.525	0.267	1672.428	1672.9269	1	867.1	67.9%	1	K.TMYPAPVTSSVYLSR.D	2
*	step04.14005.14005.2	3.7831	0.4108	1690.314	1688.9263	1	1053.6	75.0%	1	K.TM*YPAPVTSSVYLSR.D	2
*	step04.16533.16533.2	3.0507	0.4182	1368.72	1368.5559	1	924.0	77.3%	2	K.ALSAFLTCGNWK.Q	2

U	gi\|170763506\|ref\|NP_0	2	3	6.6%	519	59571	6.9	general transcription factor 3C polypeptide 5 isoform 2 [Homo sapiens]
U	gi\|170763508\|ref\|NP_0	2	3	6.5%	526	60369	7.1	general transcription factor 3C polypeptide 5 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.17952.17952.2	2.3097	0.1068	2169.037	2168.1416	45	294.7	26.7%	1	R.LDAPVDY#FY#RPETQHR.E	2
	step02.14661.14661.2	3.3329	0.1433	1930.942	1931.0958	1	948.5	58.8%	2	R.EGYNNPPISGENLIGLSR.A	2

gi|33946282|ref|NP_05

1812

202023

5.0

protein virilizer homolog isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.18831.18831.2	5.0186	0.4647	1614.029	1612.9342	1	2221.9	88.5%	4	K.WVTALEEIPSLIIK.G	2 2
	step05.11405.11405.2	3.7378	0.3453	1893.075	1894.1486	1	613.1	62.5%	4	R.VLCNVACPPPPVEGQQK.D	2 2
*	step05.18592.18592.2	3.9976	0.4605	2076.667	2075.4893	1	595.8	44.1%	1	R.ICVQLCDLASPTALLIMR.T	2
*	step03.19024.19024.2	3.2464	0.2828	2162.685	2163.3655	1	883.6	47.2%	1	R.TVLDLIVEDLQSTSEDKEK.Q	2
*	step03.485.485.2	4.6198	0.4165	1551.64	1551.8109	1	2676.9	91.7%	1	R.YAEIFQDLLALVR.S	2
*	step02.17976.17976.2	2.9565	0.1271	1577.777	1577.7141	1	749.8	66.7%	1	K.EESPENLFLELEK.L	2
*	step03.18164.18164.2	4.2223	0.5707	2525.248	2525.794	1	1425.3	52.3%	1	K.LVLEHSKDDDNLDSLLDSVVGLK.Q	2
*	step03.18177.18177.3	4.8312	0.4863	2526.457	2525.794	1	1600.7	40.9%	1	K.LVLEHSKDDDNLDSLLDSVVGLK.Q	3

Similarities: gi|33946280|ref|NP_89(2:6)

gi|169218225|ref|XP_9

1700

194322

6.7

PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.18336.18336.2	4.382	0.4811	2094.996	2094.396	1	560.0	58.3%	4	R.LIGLSATLPNYEDVATFLR.V	2 2
step04.18235.18235.3	4.8952	0.4624	2821.018	2822.1626	1	1471.1	37.0%	1	K.GLFYFDNSFRPVPLEQTYVGITEK.K	3 3
step03.18772.18772.2	2.9725	0.3067	1731.661	1733.0254	1	1449.9	71.4%	1	R.WTELGALDILQM*LGR.A	2 2
step05.14250.14250.2	3.2862	0.3109	1936.499	1937.1288	1	544.5	56.7%	2	R.MTQNPNYYNLQGISHR.H	2 2
step03.19815.19815.2	2.3865	0.174	2410.463	2409.592	1	379.4	42.5%	1	R.HLSDHLSELVEQTLSDLEQSK.C	2 2
step02.16823.16823.2	3.3923	0.3338	1728.848	1728.9286	1	1225.4	66.7%	1	R.NALLQLTDSQIADVAR.F	2 2

Similarities: gi|40217847|ref|NP_05(6:0)

U	gi\|171916095\|ref\|NP_0	3	4	6.5%	849	97458	5.0	serine/threonine-protein phosphatase 4 regulatory subunit 3B isoform 1 [Homo sapiens]
U	gi\|39930397\|ref\|NP_06	3	4	7.2%	764	87377	4.8	serine/threonine-protein phosphatase 4 regulatory subunit 3B isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.18246.18246.2	2.8363	0.38	2116.25	2116.5315	1	297.9	55.6%	2	K.LGILPALEIVMGMDDLQVR.S	2
step03.20202.20202.2	3.45	0.3523	2121.913	2121.3987	2	535.8	38.9%	1	R.SAATDIFSYLVEFSPSMVR.E	2
step03.19236.19236.2	3.2405	0.3361	1843.507	1844.0613	1	591.3	46.9%	1	K.GNLFEPVINALLDNGTR.Y	2

gi|48762920|ref|NP_00

780

85018

7.5

6-phosphofructokinase, liver type [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.12244.12244.2	2.3036	0.3149	1788.182	1789.0074	3	235.3	44.4%	1	K.AIGVLTSGGDAQGMNAAVR.A	2 2
	step03.11492.11492.2	4.2511	0.2699	1805.617	1805.007	1	465.2	55.6%	1	K.AIGVLTSGGDAQGM*NAAVR.A	2 2
*	step02.19181.19181.2	3.6696	0.3297	1647.569	1647.8075	1	2377.6	82.1%	2	R.SEWGSLLEELVAEGK.I	2
*	step03.13278.13278.2	2.7086	0.1121	2015.816	2016.1621	1	465.2	37.5%	1	R.IS#M*AAYVSGELEHVTRR.T	2

Similarities: gi|11321601|ref|NP_00(2:2)

gi|24497620|ref|NP_05

627

70730

8.6

signal recognition particle 68 kDa protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19549.19549.2	3.3132	0.224	1843.171	1843.1149	1	775.6	67.9%	2	K.VSNLQYLHSYLTYIK.L	2
*	step04.2192.2192.3	4.0495	0.3031	3044.882	3044.5303	1	1011.4	29.0%	1	R.LYDIILQNLVELLQLPGLEEDKAFQK.E	3

gi|116292162|ref|NP_0

569

63605

7.0

nitrogen permease regulator 3-like protein isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.22025.22025.2	3.5035	0.3905	1721.668	1722.0874	1	1718.6	75.0%	2	R.EAPTMILFNVVFALR.A	2
*	step06.21726.21726.2	3.5997	0.2975	1737.805	1738.0868	1	1243.1	71.4%	7	R.EAPTM*ILFNVVFALR.A	2
*	step06.449.449.3	3.528	0.2451	1738.341	1738.0868	3	725.3	42.9%	1	R.EAPTM*ILFNVVFALR.A	3
	step04.17410.17410.2	2.9829	0.4548	1282.553	1282.4696	1	672.4	85.0%	1	K.FSLPVSLSEFR.N	2 2
	step06.20034.20034.2	2.5929	0.311	1414.553	1414.6978	1	364.7	70.0%	1	R.SQLLM*LFDKFR.S	2 2

Similarities: gi|87116675|ref|NP_00(2:3)

gi|162329583|ref|NP_0

551

59210

7.2

cleavage and polyadenylation specificity factor subunit 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15635.15635.2	2.9043	0.1183	1418.307	1417.5723	1	630.8	65.0%	1	K.QFLSQFEM*QSR.K	2
*	step03.778.778.3	5.0293	0.3602	2453.702	2453.7278	1	1463.7	39.6%	2	R.AVSDASAGDYGSAIETLVTAISLIK.Q	3
*	step03.776.776.2	6.6232	0.6552	2453.741	2453.7278	1	3265.1	62.5%	4	R.AVSDASAGDYGSAIETLVTAISLIK.Q	2

gi|224586777|ref|NP_0

460

51589

6.8

WD repeat-containing protein 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19388.19388.2	5.0036	0.5349	1960.566	1960.2853	1	662.9	50.0%	2	K.IGIGMLAFSPDSYFLATR.N	2
*	step05.18184.18184.2	2.5898	0.2689	1976.351	1976.2847	1	507.8	44.1%	1	K.IGIGM*LAFSPDSYFLATR.N	2
*	step04.17694.17694.2	3.6314	0.3651	1372.454	1372.6375	1	1181.7	81.8%	2	R.LFAVLEQLSPVR.A	2

U	gi\|56682962\|ref\|NP_00	2	2	6.5%	433	49411	6.6	legumain preproprotein [Homo sapiens]
U	gi\|56682964\|ref\|NP_00	2	2	6.5%	433	49411	6.6	legumain preproprotein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.18294.18294.2	3.3843	0.1953	1939.014	1939.1146	1	981.4	62.5%	1	K.DYTGEDVTPQNFLAVLR.G	2
	step03.11406.11406.2	2.4983	0.1148	1419.377	1418.407	20	240.8	46.7%	1	K.LM*NT#NDLEESR.Q	2

gi|152963637|ref|NP_0

382

40428

8.0

zinc finger protein 787 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18607.18607.2	2.2327	0.1467	1521.733	1521.6854	1	485.3	63.6%	1	R.FSWSSNLMQHQR.I	2
*	step06.15804.15804.2	2.6915	0.5248	1277.35	1276.4666	1	511.2	83.3%	2	R.LHPELSGPGVAAK.V	2

gi|269846834|ref|NP_6

337

39086

9.5

casein kinase I isoform alpha-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13854.13854.2	2.3764	0.4533	1411.873	1410.686	1	1513.9	81.8%	1	K.TVLMLADQMISR.I	2 2 2
	step04.18726.18726.2	3.2396	0.3505	1137.564	1137.3955	2	878.2	88.9%	2	K.LFLIDFGLAK.K	2 2

Similarities: gi|68303572|ref|NP_00(2:0)
gi|68303575|ref|NP_00(1:1)

U	gi\|24430190\|ref\|NP_00	3	10	6.4%	456	49198	4.8	keratin, type I cytoskeletal 15 [Homo sapiens] keratin 15; keratin-15, basic; keratin-15, beta; type I cytoskeletal 15; cytokeratin 15 [Homo sapiens]
U	gi\|4557701\|ref\|NP_000	3	10	6.7%	432	48106	5.0	keratin, type I cytoskeletal 17 [Homo sapiens] keratin 17 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.14545.14545.2	2.3952	0.1011	1064.806	1065.2478	1	1066.5	87.5%	2	R.LASYLDKVR.A	2 2 2 2 2
step02.13582.13582.2	2.9821	0.4259	1030.23	1030.2002	1	1047.2	93.8%	4	R.VLDELTLAR.T	2 2 2 2
step03.13960.13960.2	3.1251	0.3723	1380.598	1380.5316	1	884.8	80.0%	4	K.TRLEQEIATYR.S	2 2 2 2 2 2

gi|31541941|ref|NP_05

6.3%

839

94512

5.9

heat shock 70 kDa protein 4L [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18038.18038.2	2.2493	0.1498	1160.623	1160.3907	9	734.1	75.0%	1	R.IRLPYELQK.M	2
*	step02.19257.19257.2	4.6166	0.58	1912.411	1913.0227	1	1775.8	78.6%	1	R.NFDEALVDYFCDEFK.T	2
	step05.15636.15636.2	2.8614	0.254	1537.906	1536.7848	1	555.0	46.2%	1	R.GCALQCAILSPAFK.V	2 2 2
*	step02.19211.19211.2	3.2864	0.4085	1754.733	1755.0044	1	607.6	67.9%	1	R.EFSITDLVPYSITLR.W	2

Similarities: gi|38327039|ref|NP_00(1:3)
gi|42544159|ref|NP_00(1:3)

gi|4507241|ref|NP_003

6.3%

709

81075

6.9

FACT complex subunit SSRP1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18959.18959.3	5.7157	0.5339	2652.159	2651.908	1	1613.8	42.4%	2	R.FYVPPTQEDGVDPVEAFAQNVLSK.A	3
*	step06.17336.17336.2	3.5433	0.4441	2326.933	2326.5378	1	419.5	50.0%	1	K.ITVPGNFQGHSGAQCITCSYK.A	2

U	gi\|4507555\|ref\|NP_003	4	9	6.3%	694	75492	7.7	thymopoietin isoform alpha [Homo sapiens]
U	gi\|73760405\|ref\|NP_00	4	9	9.7%	454	50670	9.4	thymopoietin isoform beta [Homo sapiens]
U	gi\|73760401\|ref\|NP_00	4	9	12.8%	345	38738	9.2	thymopoietin isoform gamma [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.9935.9935.2	3.7569	0.4349	1698.917	1698.8594	1	1206.0	80.0%	3	K.SELVANNVTLPAGEQR.K	2
step03.12726.12726.2	3.8742	0.3894	1827.401	1827.0322	1	714.7	59.4%	2	K.SELVANNVTLPAGEQRK.D	2
step06.19291.19291.2	4.4893	0.4913	1720.823	1719.965	1	2072.1	80.8%	2	K.DVYVQLYLQHLTAR.N	2
step05.12886.12886.2	2.7971	0.4026	1330.986	1331.5022	1	1027.8	75.0%	2	K.YGVNPGPIVGTTR.K	2

gi|45238849|ref|NP_11

6.3%

631

70031

9.7

polyadenylate-binding protein 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18424.18424.2	2.4263	0.29	1158.577	1158.3749	1	527.1	80.0%	1	K.FSPAGPILSIR.I	2 2 2
step02.16569.16569.2	5.4448	0.5424	1664.59	1663.8021	1	1642.5	82.1%	3	K.GFGFVCFSSPEEATK.A	2 2 2 2
step06.18928.18928.2	3.922	0.499	1543.805	1543.8783	1	660.7	73.1%	4	R.IVATKPLYVALAQR.K	2 2

Similarities: gi|46367787|ref|NP_00(3:0)
gi|208431833|ref|NP_0(1:2)
gi|185135971|ref|NP_0(2:1)

U	gi\|13775208\|ref\|NP_11	2	4	6.3%	315	35022	9.9	ADP/ATP translocase 4 [Homo sapiens]
U	gi\|55749577\|ref\|NP_00	2	4	6.7%	298	33064	9.8	ADP/ATP translocase 1 [Homo sapiens]
U	gi\|156071462\|ref\|NP_0	2	4	6.7%	298	32866	9.7	ADP/ATP translocase 3 [Homo sapiens]
U	gi\|156071459\|ref\|NP_0	2	4	6.7%	298	32852	9.7	ADP/ATP translocase 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.12886.12886.2	2.3762	0.1142	856.21	856.993	2	843.2	85.7%	2	R.GNLANVIR.Y	2
	step05.17399.17399.2	3.585	0.4983	1448.638	1447.6613	1	838.6	86.4%	2	R.YFPTQALNFAFK.D	2

U	gi\|42716280\|ref\|NP_97	5	6	6.2%	1268	141439	6.9	vigilin [Homo sapiens]
U	gi\|4885409\|ref\|NP_005	5	6	6.2%	1268	141439	6.9	vigilin [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12433.12433.2	2.2044	0.0923	970.492	970.148	6	594.5	81.2%	1	R.SGLVPQQIK.V	2
step05.12785.12785.2	2.9163	0.367	1621.376	1621.8197	2	319.1	53.8%	1	K.IQIPRPDDPSNQIK.I	2
step02.16134.16134.2	3.1924	0.1814	2101.231	2100.3557	8	137.1	34.2%	1	R.TGVSVEIPPSDSISETVILR.G	2
step06.18997.18997.2	3.7468	0.3554	1831.587	1831.0243	1	876.5	56.2%	2	K.ANSFTVSSVAAPSWLHR.F	2
step03.16527.16527.2	4.9624	0.5027	2087.09	2087.4019	1	1378.2	66.7%	1	R.VIFPAAEDKDQDLITIIGK.E	2

gi|223555917|ref|NP_8

6.2%

582

63837

9.3

protein LYRIC [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12701.12701.2	2.4558	0.1543	1807.175	1805.8405	1	882.1	60.0%	1	R.SWQDELAQQAEEGSAR.L	2
*	step03.15387.15387.2	2.3166	0.1913	2050.529	2050.3447	6	364.2	42.1%	1	R.KREEAAAVPAAAPDDLALLK.N	2

gi|13540586|ref|NP_11

6.2%

518

57341

5.2

hypothetical protein LOC81556 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.19773.19773.2	4.1773	0.5317	2245.297	2244.6616	1	644.1	52.6%	4	K.SNLMMSLFEPGPEPLPWLGK.M	2 2
	step04.20214.20214.2	3.511	0.5051	1279.449	1279.552	1	1654.6	81.8%	2	K.AALAFGFLDLLK.G	2 2

Similarities: gi|209862887|ref|NP_0(2:0)

U	gi\|62868213\|ref\|NP_00	2	2	6.2%	454	49721	6.1	Golgi-associated PDZ and coiled-coil motif-containing protein isoform b [Homo sapiens]
U	gi\|9966877\|ref\|NP_065	2	2	6.1%	462	50520	5.9	Golgi-associated PDZ and coiled-coil motif-containing protein isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.16074.16074.2	3.7297	0.2764	2146.989	2146.3813	1	754.2	50.0%	1	K.LEAQLVDLKSELTETQAEK.V	2
	step05.14003.14003.2	2.3702	0.2299	1055.508	1055.2561	1	666.7	75.0%	1	R.VQQIQLLGR.D	2

gi|6912398|ref|NP_036

6.1%

886

101272

5.1

general transcription factor 3C polypeptide 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17915.17915.2	3.1116	0.3344	2457.397	2456.695	1	1221.9	55.0%	1	K.SLQFELIAAHLNPSDTEEWVR.L	2
*	step02.19784.19784.2	6.7383	0.564	2350.679	2351.5078	1	2621.6	72.5%	2	K.SYYEANDVTSAINIIDEAFSK.H	2
*	step03.13568.13568.2	2.6583	0.221	1428.202	1428.5251	1	611.3	72.7%	1	R.GPCQESFYNLGR.G	2

gi|5032093|ref|NP_005

6.1%

541

56598

5.5

neutral amino acid transporter B(0) isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17537.17537.2	3.3356	0.4463	1436.391	1436.64	1	751.4	79.2%	2	R.NIFPSNLVSAAFR.S	2
	step02.17970.17970.2	3.8459	0.5275	2158.778	2159.4648	1	837.0	60.5%	2	K.SELPLDPLPVPTEEGNPLLK.H	2

U	gi\|116734694\|ref\|NP_0	3	5	6.1%	423	46708	9.3	probable RNA-binding protein 23 isoform 2 [Homo sapiens]
U	gi\|116734698\|ref\|NP_0	3	5	6.4%	405	44495	8.7	probable RNA-binding protein 23 isoform 3 [Homo sapiens]
U	gi\|116734696\|ref\|NP_0	3	5	5.9%	439	48731	9.8	probable RNA-binding protein 23 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13032.13032.2	2.9483	0.3455	1213.36	1213.4257	1	753.8	94.4%	2	R.TVFCM*QLAAR.I	2 2
step05.17723.17723.2	4.0997	0.4482	1910.057	1909.1984	1	1439.5	70.0%	1	R.LYVGSLHFNITEDMLR.G	2 2
step05.16780.16780.2	4.8185	0.5837	1925.707	1925.1978	1	1119.6	76.7%	2	R.LYVGSLHFNITEDM*LR.G	2 2

Similarities: gi|35493811|ref|NP_90(3:0)

gi|19923268|ref|NP_00

6.0%

761

87704

5.9

52 kDa repressor of the inhibitor of the protein kinase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19981.19981.3	5.3708	0.5088	2925.104	2925.2412	1	2685.4	41.0%	2	R.DSHFFSIITDDVVDIAGEEHLPVLVR.F	3
*	step04.18129.18129.2	4.8302	0.4327	2253.843	2253.5798	1	1355.9	65.8%	1	R.GKDIELPSTIYEALHLPDIK.F	2
*	step03.18314.18314.2	3.871	0.3548	2068.828	2068.3555	1	650.6	52.9%	1	K.DIELPSTIYEALHLPDIK.F	2

U	gi\|61835148\|ref\|NP_00	3	4	6.0%	621	69721	6.2	fragile X mental retardation syndrome-related protein 1 isoform a [Homo sapiens]
U	gi\|61835164\|ref\|NP_00	3	4	6.9%	539	60792	6.4	fragile X mental retardation syndrome-related protein 1 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15642.15642.2	2.8945	0.202	1575.708	1575.6998	1	797.8	70.8%	1	R.ANDQEPCGWWLAK.V	2
step05.15892.15892.2	2.7414	0.3865	1198.456	1198.4209	1	1036.6	83.3%	1	R.VNILSDMHLR.S	2 2
step04.209.209.2	3.3913	0.3665	1696.458	1696.9266	1	966.4	73.1%	2	R.GFLEFVEDFIQVPR.N	2 2

Similarities: gi|61835172|ref|NP_00(2:1)

gi|5031841|ref|NP_005

6.0%

564

59999

8.0

keratin 6B; keratin, epidermal, type II, K6B; keratin, type II cytoskeletal 6B; cytokeratin 6B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.11497.11497.2	2.7779	0.4224	1425.354	1425.4828	1	968.3	62.5%	1	R.GSGGLGGACGGAGFGSR.S	2 2 2 2
	step04.12933.12933.2	4.1704	0.5749	1599.179	1599.7212	1	1253.7	68.8%	2	R.ISIGGGSCAISGGYGSR.A	2 2 2 2

Similarities: gi|17505189|ref|NP_49(2:0)
gi|155969697|ref|NP_7(2:0)
gi|119703753|ref|NP_0(2:0)

gi|24308241|ref|NP_06

6.0%

514

57337

6.1

zinc finger and BTB domain-containing protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13695.13695.2	3.2137	0.507	1460.469	1459.6637	1	677.1	53.8%	2	R.VPLTLCSNAADLGK.D	2
*	step03.11341.11341.2	5.3459	0.5096	1977.957	1978.0197	1	1367.1	75.0%	4	K.HSCQNQNSDVFALDEGR.S	2

gi|40217847|ref|NP_05

5.9%

2136

244505

6.1

U5 small nuclear ribonucleoprotein 200 kDa helicase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19484.19484.2	4.8445	0.3782	1587.536	1587.8334	1	2818.2	89.3%	2	R.DILCGAADEVLAVLK.N	2
	step03.18336.18336.2	4.382	0.4811	2094.996	2094.396	1	560.0	58.3%	4	R.LIGLSATLPNYEDVATFLR.V	2 2
	step04.18235.18235.3	4.8952	0.4624	2821.018	2822.1626	1	1471.1	37.0%	1	K.GLFYFDNSFRPVPLEQTYVGITEK.K	3 3
	step03.18772.18772.2	2.9725	0.3067	1731.661	1733.0254	1	1449.9	71.4%	1	R.WTELGALDILQM*LGR.A	2 2
	step05.14250.14250.2	3.2862	0.3109	1936.499	1937.1288	1	544.5	56.7%	2	R.MTQNPNYYNLQGISHR.H	2 2
	step03.19815.19815.2	2.3865	0.174	2410.463	2409.592	1	379.4	42.5%	1	R.HLSDHLSELVEQTLSDLEQSK.C	2 2
	step02.16823.16823.2	3.3923	0.3338	1728.848	1728.9286	1	1225.4	66.7%	1	R.NALLQLTDSQIADVAR.F	2 2

Similarities: gi|169218225|ref|XP_9(6:1)

gi|155029539|ref|NP_0

5.9%

1217

134608

7.9

CST complex subunit CTC1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.20124.20124.2	4.7643	0.5895	2419.332	2418.677	1	1403.5	50.0%	1	R.EQLLLLGTLTDLSADLEQECR.N	2
*	step06.13253.13253.2	4.3082	0.3693	2066.623	2067.2444	1	1066.5	68.8%	2	R.NAHNEILEEPHHCPLQK.Y	2
*	step04.14782.14782.2	3.7207	0.3231	1817.761	1818.0587	1	980.2	62.5%	1	R.LGSTCPTQTAISQAIIR.L	2
*	step04.15279.15279.2	4.1858	0.5096	1730.754	1730.9462	1	1413.7	71.9%	1	R.VVLQFAGPGAQLESSAR.V	2

gi|68563515|ref|NP_00

5.9%

579

64136

8.3

keratinocyte proline-rich protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18672.18672.3	3.7762	0.2673	2988.531	2987.2183	1	608.5	29.3%	1	R.ATCNNYTPQFQLRPSYSSCFPQYR.S	3
*	step03.10231.10231.2	2.7465	0.2606	1219.277	1219.357	1	1199.4	88.9%	1	R.IEISSPCCPR.Q	2

gi|4505939|ref|NP_000

1970

217204

7.4

DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15679.15679.2	3.2953	0.3147	1489.834	1488.7133	1	1343.1	79.2%	1	R.VQFGVLSPDELKR.M	2
*	step06.17359.17359.2	2.986	0.367	1775.774	1775.9423	1	848.8	64.3%	1	R.TLPHFIKDDYGPESR.G	2
*	step03.17578.17580.3	4.4171	0.2815	2566.461	2565.8215	3	604.5	33.3%	1	R.TLQEDLVKDVLSNAHIQNELER.E	3
*	step02.19586.19586.2	5.1643	0.5262	1794.708	1794.9822	1	2134.1	73.3%	4	R.LSGEAFDWLLGEIESK.F	2
*	step06.19898.19898.2	4.3751	0.471	1490.812	1490.7291	1	1271.7	73.1%	1	K.TPSLTVFLLGQSAR.D	2
*	step03.10502.10502.2	3.043	0.3704	1527.811	1527.6567	1	796.9	80.8%	2	K.YSPTSPTYSPTTPK.Y	2
*	step04.12946.12946.2	4.4447	0.5618	2259.364	2259.4534	1	1300.6	60.0%	2	K.YSPTSPTYSPTSPVYTPTSPK.Y	2

gi|18375673|ref|NP_00

1118

123036

6.7

regulator of nonsense transcripts 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18627.18627.2	3.7145	0.4537	1219.668	1219.4998	1	1369.4	85.0%	2	R.NVFLLGFIPAK.A	2
*	step02.16686.16686.2	3.7986	0.2834	2002.849	2002.1326	1	864.2	60.0%	1	K.DINWDSSQWQPLIQDR.C	2
*	step04.17036.17036.2	5.0432	0.5621	1911.658	1911.1509	1	807.3	68.8%	2	R.EAIDSPVSFLALHNQIR.N	2
*	step04.14364.14364.2	3.1282	0.3792	1060.24	1060.2711	1	1443.2	83.3%	2	R.YGVIIVGNPK.A	2
*	step04.15307.15307.2	2.5606	0.3695	1224.711	1224.4348	1	1066.8	80.0%	1	K.VLVEGPLNNLR.E	2

gi|55749531|ref|NP_00

895

100228

5.7

splicing factor 3B subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11835.11835.2	3.2851	0.3231	1240.381	1239.4064	4	843.5	72.7%	2	K.LAEIGAPIQGNR.E	2
*	step03.13435.13435.2	3.8738	0.4932	1757.595	1757.9934	1	2946.3	82.1%	2	K.LAQQQAALLMQQEER.A	2
*	step03.13473.13473.3	4.7077	0.3957	1758.486	1757.9934	1	2146.1	51.8%	1	K.LAQQQAALLMQQEER.A	3
*	step03.10820.10820.3	4.6387	0.3816	1774.747	1773.9928	1	2558.1	55.4%	1	K.LAQQQAALLM*QQEER.A	3
*	step03.10687.10687.2	5.8083	0.573	1774.873	1773.9928	1	1920.8	75.0%	3	K.LAQQQAALLM*QQEER.A	2
*	step05.17513.17513.2	3.785	0.32	1631.806	1630.9081	1	490.2	69.2%	5	R.GIEKPPFELPDFIK.R	2
*	step05.12627.12627.2	2.2062	0.2679	1234.477	1233.397	1	353.1	75.0%	1	R.YGPPPSYPNLK.I	2

gi|117938254|ref|NP_0

747

85937

10.4

bcl-2-associated transcription factor 1 isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13525.13525.2	3.4274	0.321	1812.617	1813.069	1	650.2	62.5%	1	K.MAPVPLDDSNRPASLTK.D	2 2 2 2
step04.13089.13089.2	2.8761	0.3047	1828.515	1829.0684	1	397.3	56.2%	5	K.M*APVPLDDSNRPASLTK.D	2 2 2 2
step06.18214.18214.2	3.1388	0.3016	1168.466	1168.4111	1	1149.0	85.0%	2	R.LLASTLVHSVK.K	2 2 2 2
step05.19902.19902.2	2.3141	0.131	1924.38	1923.9131	170	113.3	25.0%	1	K.S#AAM*T#LNERFTSYQK.A	2 2 2

Similarities: gi|117938251|ref|NP_0(4:0)
gi|310112868|ref|XP_0(3:1)
gi|7661958|ref|NP_055(4:0)

gi|155722983|ref|NP_0

704

80110

8.2

heat shock protein 75 kDa, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step02.13929.13929.2	4.8973	0.2401	1515.494	1514.6627	1	1634.4	84.6%	4	R.GVVDSEDIPLNLSR.E	2 2 2
*	step02.16265.16265.2	3.4987	0.3005	1861.794	1861.0405	1	583.5	62.5%	2	R.EGIVTATEQEVKEDIAK.L	2
*	step04.14256.14256.2	2.8412	0.3361	1284.432	1284.4391	1	1011.0	83.3%	1	R.NIYYLCAPNR.H	2

Similarities: gi|20149594|ref|NP_03(1:2)
gi|153792590|ref|NP_0(1:2)

gi|33519475|ref|NP_00

727

79468

6.2

NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.23348.23348.2	2.3735	0.1353	2240.864	2241.3904	7	383.7	26.6%	2	R.FAY#DGLKRQRLT#EPMVR.N	2
*	step03.20649.20649.2	2.4318	0.1334	2839.966	2840.098	3	223.9	23.6%	1	K.GLLTYTSWEDALSRVAGMLQS#FQGK.D	2

gi|4506591|ref|NP_000

533

60948

6.5

retinoid isomerohydrolase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13179.13179.2	2.212	0.1259	1718.193	1717.9708	10	471.4	46.2%	1	R.FIRTDAYVRAM*TEK.R	2
*	step02.7602.7602.2	2.3965	0.1375	1967.686	1967.1923	14	169.0	33.3%	1	K.PAYLLILNAKDLS#EVAR.A	2

gi|4506919|ref|NP_000

502

56695

6.9

N-sulphoglucosamine sulphohydrolase precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17712.17712.2	2.5436	0.0911	1835.673	1834.6925	12	330.8	30.8%	1	R.T#TAGQPT#GWY#KDLR.H	2
*	step04.1161.1161.2	2.4343	0.1903	1977.183	1977.7522	2	644.5	31.4%	1	R.S#RDPHET#QNLAT#DPR.F	2

gi|7657381|ref|NP_055

504

55181

6.6

pre-mRNA-processing factor 19 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10833.10833.2	2.5455	0.4002	1599.071	1598.8196	1	408.1	61.5%	2	K.TVPEELVKPEELSK.Y	2
*	step03.14157.14157.2	3.2216	0.3811	1577.422	1576.8188	1	1073.8	67.9%	2	K.ILTGGADKNVVVFDK.S	2

gi|4507445|ref|NP_003

450

49177

7.8

transcription factor AP-2 gamma [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17159.17159.2	2.8476	0.2163	1796.461	1797.0826	1	356.5	62.5%	2	R.LSPPECLNASLLGGVLR.R	2 2
2	step05.13866.13866.2	2.514	0.4195	910.773	911.0838	1	949.9	87.5%	1	K.IGLNLPAGR.R	2 2

Similarities: gi|109389358|ref|NP_0(2:0)

gi|210147475|ref|NP_0

416

45791

10.2

zinc finger protein 92 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.9571.9571.2	2.4747	0.0865	1311.831	1311.5138	1	1035.4	70.0%	1	-.M*AAILLT#TRPK.V	2
*	step05.15294.15294.2	2.4024	0.0822	1678.937	1679.5485	8	293.4	31.7%	1	R.PS#TAARPS#RPS#RR.-	2

gi|7705626|ref|NP_057

137

15345

9.5

28S ribosomal protein S16, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14000.14000.1	2.2778	0.2432	913.736	914.0845	3	279.2	78.6%	2	K.LVALNLDR.I	1
*	step03.14001.14001.2	3.0639	0.3999	913.942	914.0845	1	592.7	92.9%	2	K.LVALNLDR.I	2

U	gi\|30794372\|ref\|NP_06	5	6	5.7%	1602	183689	6.7	protein polybromo-1 isoform 1 [Homo sapiens]
U	gi\|93102371\|ref\|NP_06	5	6	5.8%	1582	181084	6.9	protein polybromo-1 isoform 2 [Homo sapiens]
U	gi\|41281917\|ref\|NP_85	5	6	5.8%	1582	182117	6.8	protein polybromo-1 isoform 4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.17364.17364.2	3.4976	0.4997	2425.742	2426.747	1	612.6	52.5%	2	R.LSNLPTVDPIAVCHELYNTIR.D	2
step02.16858.16858.2	2.5834	0.2609	2039.343	2040.2825	4	258.6	40.6%	1	R.NQPDYYEVVSQPIDLMK.I	2
step02.7564.7564.2	3.618	0.432	2258.657	2259.3057	1	330.0	45.2%	1	R.RDDIEDGDSMISSATSDTGSAK.R	2
step02.19506.19506.2	3.7176	0.5094	2175.465	2176.3645	1	1894.2	61.8%	1	R.TDSEIYEDAVELQQFFIK.I	2
step02.8483.8483.2	2.4463	0.1676	1499.585	1498.617	4	388.2	65.4%	1	K.YIEGLSAESNSISK.W	2

gi|163792194|ref|NP_1

5.7%

733

81747

7.9

TRM1-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19346.19346.2	3.3487	0.2789	2548.974	2549.7776	1	540.6	50.0%	1	R.SFDFIHLDPFGTSVNYLDSAFR.N	2
*	step05.19983.19983.2	5.2254	0.4817	2182.688	2182.5034	1	1357.3	63.2%	3	K.TAIELGPLWSSSLFNTGFLK.R	2

gi|185135971|ref|NP_0

5.7%

614

68392

8.9

polyadenylate-binding protein 1-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18424.18424.2	2.4263	0.29	1158.577	1158.3749	1	527.1	80.0%	1	K.FSPAGPILSIR.V	2 2 2
step04.15231.15231.2	3.2457	0.2952	935.036	935.1021	1	837.6	93.8%	2	K.SGVGNIFIK.N	2 2
step02.16569.16569.2	5.4448	0.5424	1664.59	1663.8021	1	1642.5	82.1%	3	K.GFGFVCFSSPEEATK.A	2 2 2 2

Similarities: gi|46367787|ref|NP_00(3:0)
gi|208431833|ref|NP_0(1:2)
gi|45238849|ref|NP_11(2:1)

U	gi\|197209821\|ref\|NP_0	2	6	5.7%	435	48581	7.1	estrogen-related receptor gamma isoform 2 [Homo sapiens]
U	gi\|45545433\|ref\|NP_00	2	6	5.5%	458	51306	6.5	estrogen-related receptor gamma isoform 1 [Homo sapiens]
U	gi\|45545429\|ref\|NP_99	2	6	5.7%	435	48581	7.1	estrogen-related receptor gamma isoform 2 [Homo sapiens]
U	gi\|45545427\|ref\|NP_99	2	6	5.7%	435	48581	7.1	estrogen-related receptor gamma isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.20284.20284.2	5.5275	0.4617	1709.796	1709.0667	1	1900.0	70.0%	4	K.LAGLLDLNNAILQLVK.K	2
	step06.18637.18637.2	2.4135	0.3009	1120.37	1120.455	1	844.7	87.5%	2	K.MLMTLPLLR.Q	2

gi|24307899|ref|NP_00

5.7%

437

48350

8.8

GTP-binding protein era homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13908.13908.2	2.5969	0.1476	1069.01	1069.2396	1	719.2	75.0%	2	R.NQLSPQLLR.C	2
*	step04.15004.15004.2	4.1676	0.4156	1936.617	1936.2003	1	855.8	66.7%	2	K.LLEHLPQEVPYNVQQK.T	2

gi|87116675|ref|NP_00

5.6%

390

43606

6.4

nitrogen permease regulator 3-like protein isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.17410.17410.2	2.9829	0.4548	1282.553	1282.4696	1	672.4	85.0%	1	K.FSLPVSLSEFR.N	2 2
	step06.20034.20034.2	2.5929	0.311	1414.553	1414.6978	1	364.7	70.0%	1	R.SQLLM*LFDKFR.S	2 2

Similarities: gi|116292162|ref|NP_0(2:0)

gi|77404397|ref|NP_05

5.5%

910

101997

7.2

staphylococcal nuclease domain-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.22177.22177.2	5.7059	0.5984	2011.147	2010.4688	1	1460.4	79.4%	2	R.ALLLPDYYLVTVMLSGIK.C	2
*	step02.17957.17957.2	5.851	0.5854	2307.979	2307.5413	1	1300.3	70.0%	2	R.NLPGLVQEGEPFSEEATLFTK.E	2
*	step05.14088.14090.2	2.7896	0.3849	1150.318	1150.3096	1	740.0	90.0%	1	R.LGTLSPAFSTR.V	2

gi|21361633|ref|NP_06

5.5%

602

68250

6.4

leucine-rich repeat-containing protein 40 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.9467.9467.2	2.8998	0.3085	1276.329	1275.4272	1	704.5	68.2%	1	R.DCGTSVPQGLLK.A	2
*	step04.17145.17145.2	4.7021	0.543	2313.902	2314.58	1	781.4	60.0%	2	R.LDLSNNDISSLPYSLGNLHLK.F	2

gi|62460637|ref|NP_07

1081

118715

5.0

importin-4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20065.20065.2	4.4441	0.5227	2551.158	2551.798	1	931.8	52.3%	1	R.NAALFALGQFSENLQPHISSYSR.E	2
*	step04.13042.13042.2	2.4657	0.4225	1264.171	1264.4794	2	325.8	80.0%	1	R.VVPSYMQAVNR.E	2
*	step04.19398.19398.2	4.8974	0.5492	2382.529	2382.6577	1	1576.9	52.2%	1	K.SFAVGTLAETIQGLGAASAQFVSR.L	2

gi|29029559|ref|NP_00

971

110417

5.8

exportin-2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.20510.20510.2	4.8157	0.6192	2435.031	2434.8125	1	1275.4	52.5%	2	K.FLESVEGNQNYPLLLLTLLEK.S	2
*	step06.17672.17672.2	3.5703	0.2715	1824.554	1825.1228	1	844.1	66.7%	1	K.ANIVHLM*LSSPEQIQK.Q	2
*	step06.395.395.2	4.5874	0.4809	1676.591	1676.0352	1	1710.7	78.6%	2	K.LVLDAFALPLTNLFK.A	2

U	gi\|239787838\|ref\|NP_0	3	4	5.4%	929	105674	9.4	testis-expressed sequence 10 protein isoform 1 [Homo sapiens]
U	gi\|239787844\|ref\|NP_0	3	4	5.5%	913	103915	9.4	testis-expressed sequence 10 protein isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.20003.20003.2	2.5368	0.2087	2256.694	2257.3835	97	141.0	25.9%	1	K.TIHLPEQLKEDGTLPT#NNR.K	2
step05.16215.16215.2	4.2956	0.4292	1543.749	1543.7489	1	1474.5	83.3%	1	K.NFVELISHQQLSK.G	2
step04.17926.17926.2	6.4127	0.5829	1964.651	1964.212	1	1774.7	76.5%	2	R.NPELSTQLIDIIHTAAAR.A	2

gi|21361361|ref|NP_00

632

67868

8.1

acetolactate synthase-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19735.19735.2	5.2623	0.5435	1917.781	1917.2351	1	1687.4	71.9%	2	R.GALQAVDQLSLFRPLCK.F	2
*	step04.17103.17103.2	3.8763	0.4559	1749.809	1750.0494	1	624.9	65.6%	2	R.AAVETLGVPCFLGGMAR.G	2

gi|310129761|ref|XP_0

612

64799

8.8

PREDICTED: hypothetical protein LOC100510580 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.12221.12221.2	2.3681	0.1443	1582.391	1581.8506	55	161.1	41.7%	1	R.MLLLSTRCCSSPR.D	2
*	step02.12929.12929.2	2.3857	0.2201	2118.086	2117.3748	4	231.2	34.2%	1	R.MVSGEAKPRLSGGDEAGLWR.L	2

gi|27894337|ref|NP_06

424

48487

5.7

keratin, type I cytoskeletal 20 [Homo sapiens] keratin 20; cytokeratin 20; keratin, type I cytoskeletal 20 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13960.13960.2	3.1251	0.3723	1380.598	1380.5316	1	884.8	80.0%	2	K.TRLEQEIATYR.R	2 2 2 2 2 2
	step02.15939.15939.2	2.4753	0.2332	1710.582	1710.5033	89	161.6	25.5%	2	K.T#T#EY#QLSTLEER.D	2

gi|32483357|ref|NP_06

278

29537

8.5

dehydrogenase/reductase SDR family member 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17254.17254.2	2.6276	0.1121	1652.564	1651.8943	4	427.6	50.0%	1	R.MASSGM*TRRDPLANK.V	2
*	step04.12075.12075.2	2.7075	0.1189	1668.453	1667.8937	10	461.2	46.4%	1	R.MASSGMTRRDPLANK.V	2

gi|67782362|ref|NP_06

5.3%

1369

155235

8.1

ATP-dependent RNA helicase DHX29 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13586.13586.1	2.5109	0.0984	1208.68	1208.3701	24	679.5	59.3%	2	K.S#ILKVVINNK.L	1
*	step03.7927.7927.2	2.8171	0.3802	1921.605	1921.1414	1	199.3	46.7%	1	R.EMETLEDHPVFNPAMK.I	2
	step04.16052.16052.2	2.629	0.273	1309.201	1309.5731	1	1096.7	80.0%	1	R.LLYCTTGVLLR.K	2 2
*	step05.19850.19850.2	4.7322	0.4413	1994.524	1994.3479	1	652.1	67.6%	2	K.ALDPPQLQVISNAMNLLR.K	2
*	step02.9656.9656.2	3.6654	0.41	1746.191	1746.7731	1	895.3	53.1%	2	K.AAGFSSSTTSTSWEGNR.A	2

Similarities: gi|39777586|ref|NP_94(1:4)

gi|188536047|ref|NP_0

5.3%

1105

122867

5.8

SWI/SNF complex subunit SMARCC1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15137.15137.2	5.0423	0.3864	1781.659	1780.9156	2	1465.0	71.4%	2	K.FWESPETVSQLDSVR.V	2
*	step06.1536.1536.2	5.7893	0.6102	2078.735	2078.3967	1	2691.1	69.4%	3	K.TLAGLVVQLLQFQEDAFGK.H	2
*	step06.18889.18889.2	3.4362	0.2464	1402.192	1402.6171	1	1186.6	73.1%	1	K.AGGALCHILGAAYK.Y	2
	step03.16159.16159.2	2.713	0.324	1433.239	1432.6	1	894.1	80.0%	2	R.TQDECILHFLR.L	2 2

Similarities: gi|194363725|ref|NP_0(1:3)

gi|4503249|ref|NP_003

5.3%

375

42674

8.6

protein DEK isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.10174.10174.2	2.9217	0.3193	1179.219	1179.3727	1	444.7	72.2%	2	R.LTM*QVSSLQR.E	2
	step02.15318.15318.2	3.4299	0.408	1234.553	1234.3751	1	1241.5	88.9%	1	K.SICEVLDLER.S	2

gi|154744870|ref|NP_0

896

98900

8.1

zinc finger protein 574 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16751.16751.2	2.4026	0.1471	1586.62	1585.7908	2	446.8	66.7%	2	K.ALFASQELWLNHR.Q	2
*	step05.12278.12278.2	4.8996	0.4517	1935.445	1936.1587	1	1980.6	61.9%	4	R.APVASPAALGSTATASPAAPAR.R	2
*	step05.14330.14330.2	2.3387	0.1044	1419.542	1418.58	24	216.3	50.0%	1	K.LFSTETSLQVHR.R	2

U	gi\|33469917\|ref\|NP_87	3	3	5.2%	863	96558	6.7	DNA replication licensing factor MCM4 [Homo sapiens]
U	gi\|33469919\|ref\|NP_00	3	3	5.2%	863	96558	6.7	DNA replication licensing factor MCM4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.18641.18641.2	2.5838	0.3225	1593.75	1593.8511	1	722.8	70.8%	1	K.SQLLQYVYNLVPR.G	2
step06.18966.18966.2	3.722	0.3509	1736.723	1736.9938	1	770.7	64.3%	1	K.TTIENIQLPHTLLSR.F	2
step02.16607.16607.2	4.4969	0.3918	1942.81	1942.1371	1	978.3	56.2%	1	R.LSEEASQALIEAYVDM*R.K	2

gi|23510448|ref|NP_00

734

82286

8.4

DNA replication licensing factor MCM5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18647.18647.2	3.5898	0.3885	1181.64	1181.4531	1	1549.3	90.9%	2	K.IPGIIIAASAVR.A	2
*	step05.16498.16498.2	3.2115	0.5109	1165.64	1165.3608	1	2035.0	90.0%	1	K.AIACLLFGGSR.K	2
*	step02.16655.16655.2	3.7901	0.4238	1689.732	1689.8477	1	850.5	78.6%	2	K.LQPFATEADVEEALR.L	2

gi|33469922|ref|NP_87

543

60643

6.3

DNA replication licensing factor MCM7 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14817.14817.2	2.8534	0.1415	1187.876	1188.3594	1	769.8	75.0%	2	R.GSSGVGLTAAVLR.D	2 2
	step04.16759.16759.2	4.887	0.3677	1654.67	1653.9048	1	1262.4	71.4%	2	R.SLEQNIQLPAALLSR.F	2 2

Similarities: gi|33469968|ref|NP_00(2:0)

U	gi\|13128860\|ref\|NP_00	2	4	5.2%	482	55103	5.5	histone deacetylase 1 [Homo sapiens]
U	gi\|293336691\|ref\|NP_0	2	4	5.1%	488	55364	5.9	histone deacetylase 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.19363.19363.2	3.7674	0.4546	1624.294	1624.8887	1	1134.0	83.3%	2	R.M*THNLLLNYGLYR.K	2
	step02.13295.13295.2	3.7764	0.479	1375.571	1375.4672	1	807.1	81.8%	2	K.YGEYFPGTGDLR.D	2

U	gi\|239937451\|ref\|NP_0	2	4	5.2%	404	44659	6.5	adenosylhomocysteinase isoform 2 [Homo sapiens]
U	gi\|9951915\|ref\|NP_000	2	4	4.9%	432	47716	6.3	adenosylhomocysteinase isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.18608.18608.2	3.4611	0.3132	1057.528	1057.2705	2	822.1	81.2%	2	K.YPQLLPGIR.G	2
	step03.10767.10767.2	3.3195	0.5601	1257.703	1257.4185	1	981.9	81.8%	2	K.VPAINVNDSVTK.S	2

gi|20127499|ref|NP_00

344

39587

11.4

serine/arginine-rich splicing factor 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.12955.12955.2	2.736	0.3421	1031.485	1031.1882	1	750.4	93.8%	2	R.LIVENLSSR.C	2
*	step02.8885.8885.2	2.2939	0.1565	1065.601	1065.1615	1	845.2	93.8%	1	R.TNEGVIEFR.S	2

gi|154426312|ref|NP_0

5.1%

489

54178

9.6

SPATS2-like protein isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15424.15424.2	2.8821	0.2749	1390.596	1389.368	9	216.6	38.6%	1	R.GVT#GPNIEKS#VK.D	2
	step06.16123.16123.2	2.8576	0.0956	2064.609	2063.235	43	190.9	35.6%	1	K.SVKDLQRCT#VSLTRYR.V	2

U	gi\|157694492\|ref\|NP_0	5	12	5.0%	1328	148854	9.3	myb-binding protein 1A isoform 2 [Homo sapiens]
U	gi\|157694494\|ref\|NP_0	5	12	5.0%	1332	149366	9.3	myb-binding protein 1A isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.19093.19093.2	3.3821	0.3532	2171.873	2172.3806	1	281.1	43.8%	2	R.EFLDFFWDIAKPEQETR.L	2
step05.13708.13708.2	2.3122	0.3941	886.386	886.0743	1	948.6	93.8%	2	R.LITGLGVGR.E	2
step05.18119.18119.2	3.5243	0.4035	1095.566	1095.3602	1	1395.7	94.4%	1	K.LPAIALDLLR.L	2
step06.19595.19595.2	2.9195	0.4571	1110.579	1110.4148	1	902.2	85.0%	2	R.LLGAALPLLTK.E	2
step06.21892.21892.2	4.8379	0.4942	2104.828	2105.3757	1	1097.8	58.3%	5	R.EAVSSAFFSLLQTLSTQFK.Q	2

U	gi\|225007648\|ref\|NP_0	3	4	5.0%	1024	114709	9.2	ribonucleases P/MRP protein subunit POP1 [Homo sapiens]
U	gi\|225007652\|ref\|NP_0	3	4	5.0%	1024	114709	9.2	ribonucleases P/MRP protein subunit POP1 [Homo sapiens]
U	gi\|225007650\|ref\|NP_0	3	4	5.0%	1024	114709	9.2	ribonucleases P/MRP protein subunit POP1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.15223.15223.2	2.8994	0.3152	1349.611	1349.5176	2	888.9	63.6%	2	K.SSNSLVFQTLPR.H	2
step05.16656.16656.2	2.8121	0.2648	1904.592	1905.1844	1	445.0	55.9%	1	R.SELLVPGSQLILGPHESK.I	2
step03.18484.18484.2	2.6588	0.3077	2596.726	2595.8347	3	248.9	35.0%	1	K.LGTLAPFCCPWEQLTQDWESR.V	2

U	gi\|4504205\|ref\|NP_001	2	4	5.0%	911	100680	7.3	general transcription factor 3C polypeptide 2 [Homo sapiens]
U	gi\|78482617\|ref\|NP_00	2	4	5.0%	911	100680	7.3	general transcription factor 3C polypeptide 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.506.506.3	5.1929	0.4464	3268.076	3267.7085	1	1057.4	35.0%	2	R.AAQVALLYLQELAEELSTALPAPVSCPEGPK.V	3
	step06.19800.19800.2	3.0699	0.3534	1864.995	1866.1052	1	806.7	71.4%	2	K.LYPFQCFLAHDQAVR.T	2

gi|21071032|ref|NP_05

622

69838

6.8

probable ATP-dependent RNA helicase DDX41 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.21516.21516.2	2.8576	0.2243	2068.919	2069.4866	1	287.0	43.8%	1	K.TLVFTLPVIMFCLEQEK.R	2
*	step04.16623.16624.2	4.7672	0.3869	1629.645	1628.8937	1	1816.2	80.8%	3	K.KADVDAIHEYLLLK.G	2

gi|139394599|ref|NP_0

615

66156

6.4

hypermethylated in cancer 2 protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11623.11623.2	2.9203	0.3296	1046.421	1046.2029	1	928.2	88.9%	2	R.LSTASVIQAR.Y	2
*	step01.8977.8977.2	2.3627	0.2603	2233.131	2232.2014	1	310.6	33.3%	1	K.GS#DDELFLGGSNQDSVQGLGR.A	2

gi|42516574|ref|NP_96

518

59302

4.6

E3 ubiquitin-protein ligase TRIM41 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15401.15401.2	4.4827	0.439	1237.809	1237.3441	1	2249.6	90.9%	1	K.SELAAVASEFGR.L	2 2
	step02.13677.13677.2	4.123	0.4282	1588.748	1588.7335	1	1955.5	80.8%	1	R.FSADCCVLGAQGFR.S	2 2

Similarities: gi|42516572|ref|NP_29(2:0)

U	gi\|209969703\|ref\|NP_0	2	4	5.0%	522	56085	8.8	protein RCC2 [Homo sapiens]
U	gi\|29789090\|ref\|NP_06	2	4	5.0%	522	56085	8.8	protein RCC2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.17860.17860.2	3.5542	0.2255	1635.554	1635.9326	1	753.7	67.9%	2	K.TKDGQILPVPNVVVR.D	2
	step04.16881.16881.2	3.5107	0.5212	1233.459	1233.3588	1	1206.6	90.0%	2	R.VFSWGFGGYGR.L	2

gi|21450814|ref|NP_65

404

43395

4.9

hypothetical protein LOC147339 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.19190.19190.2	5.2357	0.568	2194.749	2195.5376	1	1169.7	57.9%	2	K.DGVADSTVISSMPCLLMELR.R	2 2
	step02.19217.19217.3	4.7641	0.4101	2194.942	2195.5376	1	1796.3	48.7%	1	K.DGVADSTVISSMPCLLMELR.R	3 3

Similarities: gi|56549656|ref|NP_00(2:0)

gi|155030232|ref|NP_0

1130

119700

4.3

proline-, glutamic acid- and leucine-rich protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19469.19469.3	3.6227	0.4246	1538.868	1538.8568	1	1874.1	55.8%	1	R.LLLLESVSGLLQPR.T	3
*	step05.19406.19406.2	3.2603	0.3076	1539.661	1538.8568	1	647.8	65.4%	5	R.LLLLESVSGLLQPR.T	2
*	step05.16511.16511.2	3.2467	0.4105	1150.619	1150.3544	1	1117.3	88.9%	1	R.YAAQLPALFR.D	2
*	step02.14638.14638.2	2.6938	0.1305	2137.947	2139.339	1	1337.3	61.8%	1	R.VDALSPQLQQLACECYSR.L	2
*	step06.18266.18266.2	3.6704	0.5674	1275.417	1275.4786	1	1375.6	79.2%	1	R.LPSLGAGFSQGLK.H	2

gi|109134349|ref|NP_0

871

97622

5.8

coatomer subunit gamma-2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.19290.19290.2	3.4946	0.4872	1245.475	1245.5338	1	1909.0	86.4%	2	R.SIATLAITTLLK.T	2 2
*	step06.21131.21131.2	4.6906	0.4235	1999.959	1999.3427	1	1185.9	58.8%	1	K.FGAQNESLLPSILVLLQR.C	2
*	step04.16640.16640.2	2.2207	0.3455	1431.43	1431.7251	1	585.8	70.8%	1	K.SIPLAMAPVFEQK.A	2

Similarities: gi|11559929|ref|NP_05(1:2)

gi|46519154|ref|NP_07

627

64912

4.5

ankyrin repeat and KH domain-containing protein 1 isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.16121.16121.2	3.6979	0.5365	1185.605	1185.3954	1	2259.1	90.9%	1	R.LEALLEAAGIGK.L	2 2 2
	step04.17750.17751.2	4.818	0.4945	1993.02	1993.202	1	1023.6	69.4%	1	R.RLTSSVSCALDEAAAALTR.M	2 2 2

Similarities: gi|37620163|ref|NP_06(2:0)
gi|38683807|ref|NP_11(2:0)

gi|48928046|ref|NP_38

529

60898

6.7

F-box/WD repeat-containing protein 11 isoform B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.3147.3147.2	2.4412	0.108	2102.69	2103.0042	3	284.4	25.0%	1	K.NTLWQISNGTS#S#VIVS#R.K	2
	step04.12414.12414.2	2.294	0.0888	989.858	989.1448	1	536.5	75.0%	1	R.APASTLCLR.T	2

gi|4506439|ref|NP_002

425

47820

5.0

histone-binding protein RBBP7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15034.15034.2	3.9907	0.4984	1472.502	1472.6211	1	1962.4	83.3%	2	K.TPSSDVLVFDYTK.H	2 2
	step03.16099.16099.2	2.2193	0.2704	974.246	974.13837	1	515.2	78.6%	1	K.TVALWDLR.N	2 2

Similarities: gi|207029415|ref|NP_0(2:0)

U	gi\|116063573\|ref\|NP_0	8	12	4.8%	2639	280016	6.0	filamin-A isoform 1 [Homo sapiens]
U	gi\|160420317\|ref\|NP_0	8	12	4.8%	2647	280737	6.1	filamin-A isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.18888.18888.2	3.5668	0.4049	1227.638	1227.5186	1	1128.8	90.0%	2	R.LIALLEVLSQK.K	2 2 2
step03.10140.10140.2	5.2458	0.4922	1653.616	1653.8186	1	1233.6	68.8%	2	K.VTAQGPGLEPSGNIANK.T	2
step04.11845.11845.2	4.7608	0.5468	1869.003	1869.013	1	1348.3	75.0%	2	R.SPYTVTVGQACNPSACR.A	2
step03.12855.12855.2	2.7443	0.1994	1646.802	1647.8539	1	597.3	53.3%	2	K.TGVAVNKPAEFTVDAK.H	2
step03.13886.13886.2	3.3304	0.5603	2286.607	2287.5564	1	872.5	54.8%	1	K.YTPVQQGPVGVNVTYGGDPIPK.S	2
step05.10618.10618.2	2.3544	0.403	1156.135	1156.3507	1	574.7	68.2%	1	K.IVGPSGAAVPCK.V	2
step05.12228.12230.2	3.2629	0.4629	1430.717	1430.5508	1	1194.1	76.7%	1	K.AFGPGLQGGSAGSPAR.F	2
step05.16589.16589.2	3.1698	0.4392	1742.611	1742.0723	1	634.8	53.3%	1	R.VTYTPMAPGSYLISIK.Y	2

Similarities: gi|105990514|ref|NP_0(1:7)
gi|116805322|ref|NP_0(1:7)

gi|7706457|ref|NP_057

1901

210511

5.4

A-kinase anchor protein 11 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12972.12972.2	2.6485	0.2214	2229.43	2228.441	12	184.5	31.6%	1	R.KPESPYGNLCDAPDSPRPVK.A	2
*	step04.20280.20280.2	5.702	0.4972	1919.536	1919.2112	1	2187.0	66.7%	4	R.AISGLANFLVSEALSNALK.D	2
*	step02.19407.19407.3	3.8638	0.4057	2053.53	2053.2495	1	1475.5	44.4%	1	K.TLCNFAGDLAAEVITEAEK.I	3
*	step03.17088.17088.2	2.6248	0.0853	1894.729	1894.1584	2	409.6	53.1%	1	K.KVVDDTLELTLGSTVFR.V	2
*	step03.65.65.2	6.371	0.5363	1999.728	1999.3165	1	2132.5	71.9%	2	K.VGDLLQAVLQYYEVMEK.A	2
*	step02.19829.19829.2	4.6687	0.528	2014.318	2015.3159	1	2701.1	71.9%	2	K.VGDLLQAVLQYYEVM*EK.A	2

gi|39777586|ref|NP_94

1386

155604

7.7

putative ATP-dependent RNA helicase DHX57 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12116.12116.2	3.302	0.4581	1172.445	1172.3534	1	1603.8	94.4%	2	K.VANIICTQPR.R	2
	step04.16052.16052.2	2.629	0.273	1309.201	1309.5731	1	1096.7	80.0%	1	R.LLYCTTGVLLR.R	2 2
*	step02.19480.19480.2	4.173	0.4358	1970.673	1970.2135	1	835.7	68.8%	1	R.TFPVDQFFLEDAIAVTR.Y	2
*	step06.19225.19225.2	3.1068	0.1765	1753.264	1752.05	106	252.3	40.0%	1	R.LTPLGYHLASLPVDVR.I	2
*	step06.16286.16286.2	3.156	0.4156	1574.448	1574.7914	1	416.9	62.5%	1	K.IKNPSIDLCTCPR.G	2

Similarities: gi|67782362|ref|NP_06(1:4)

gi|24797086|ref|NP_00

1115

125545

4.9

importin-5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17554.17554.2	3.355	0.2753	1075.495	1075.329	1	1475.6	93.8%	1	K.ITFLLQAIR.N	2
*	step04.15687.15687.2	4.3906	0.5176	1957.485	1957.1698	1	1404.5	61.8%	2	R.VQAHAAAALINFTEDCPK.S	2
*2	step04.17775.17775.2	2.457	0.1569	1637.056	1636.9346	1	325.6	58.3%	1	K.FVPYYDLFM*PSLK.H	2 2
*	step05.17718.17718.2	3.8772	0.3523	1496.799	1496.6891	1	1103.2	79.2%	2	K.VSDILHSIFSSYK.E	2

Similarities: gi|45331213|ref|NP_03(1:3)

U	gi\|145553959\|ref\|NP_0	2	5	4.8%	826	92219	7.9	zinc phosphodiesterase ELAC protein 2 isoform 1 [Homo sapiens]
U	gi\|260166622\|ref\|NP_7	2	5	4.8%	825	92091	7.8	zinc phosphodiesterase ELAC protein 2 isoform 2 [Homo sapiens]
U	gi\|260166619\|ref\|NP_0	2	5	5.1%	786	87564	8.0	zinc phosphodiesterase ELAC protein 2 isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.18027.18027.2	3.2122	0.4452	1822.736	1823.2332	1	799.0	58.3%	3	K.EMGLPVGTAAIAPIIAAVK.D	2
	step05.17219.17219.2	5.3835	0.5931	2119.709	2119.4739	1	1341.4	62.5%	2	K.ADAPVALVVHMAPASVLVDSR.Y	2

gi|110671329|ref|NP_0

482

53517

8.5

lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20930.20930.2	2.414	0.3259	1130.56	1130.4265	1	703.6	81.2%	1	K.LSFMPFFLK.A	2
*	step03.18972.18972.2	5.6985	0.5178	1654.635	1654.9514	1	2195.7	88.5%	2	K.SYLENPAFMLLDLK.-	2

U	gi\|33636738\|ref\|NP_89	2	2	4.8%	398	46236	8.7	cAMP-dependent protein kinase catalytic subunit beta isoform 1 [Homo sapiens]
U	gi\|4506057\|ref\|NP_002	2	2	5.4%	351	40623	8.8	cAMP-dependent protein kinase catalytic subunit beta isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.11863.11863.2	2.2114	0.1516	896.431	895.98285	1	568.7	87.5%	1	K.TLGTGSFGR.V	2 2
	step05.15140.15140.2	2.4396	0.0863	1200.287	1200.4132	5	398.6	72.2%	1	R.NLLQVDLTKR.F	2 2

Similarities: gi|4506055|ref|NP_002(2:0)

gi|6005747|ref|NP_009

336

37655

6.8

E3 ubiquitin-protein ligase RING2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17410.17410.2	5.022	0.5427	1948.561	1948.3246	1	2278.1	80.0%	1	R.SLHSELMCPICLDMLK.N	2 2
	step05.16528.16528.2	2.2173	0.1443	1964.006	1964.3241	5	362.6	40.0%	1	R.SLHSELMCPICLDM*LK.N	2 2

Similarities: gi|51479192|ref|NP_00(2:0)

U	gi\|282394030\|ref\|NP_5	3	5	4.7%	1070	115861	8.9	E3 ubiquitin-protein ligase MIB2 isoform 1 [Homo sapiens]
U	gi\|282394036\|ref\|NP_0	3	5	5.0%	1005	108889	8.8	E3 ubiquitin-protein ligase MIB2 isoform 4 [Homo sapiens]
U	gi\|282394034\|ref\|NP_0	3	5	4.7%	1056	114326	8.8	E3 ubiquitin-protein ligase MIB2 isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.13752.13752.2	2.9772	0.3313	1448.012	1447.6448	1	855.8	70.8%	2	R.MAEFIGQTGTVHR.I	2 2
step03.11594.11594.2	2.4835	0.2332	1942.136	1942.1022	21	142.0	35.3%	1	R.LQAGHGEWTDDM*APALGR.V	2 2 2
step06.14206.14206.2	3.6164	0.4815	1845.533	1846.0372	1	718.0	58.3%	2	K.LRPDGSEVASAAPAPGPPR.Q	2 2

Similarities: gi|282394038|ref|NP_0(2:1)
gi|282394032|ref|NP_0(2:1)

U	gi\|4505917\|ref\|NP_002	2	2	4.7%	860	98089	8.4	exosome component 10 isoform 2 [Homo sapiens]
U	gi\|50301240\|ref\|NP_00	2	2	4.5%	885	100831	8.5	exosome component 10 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.16515.16515.2	2.7259	0.089	2058.675	2058.2046	143	321.4	26.7%	1	K.AKS#ET#FRLLHAKNIIR.P	2
	step06.18023.18023.3	3.9832	0.3485	2703.175	2702.1296	1	524.8	31.5%	1	K.IAEELPKEPQGIIACCNPVPPLVR.Q	3

gi|11067747|ref|NP_00

4.7%

802

92251

8.2

cell division cycle 5-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16688.16688.2	3.1706	0.2881	2010.758	2010.188	1	453.0	38.9%	2	K.ESDLPSAILQTSGVSEFTK.K	2
*	step04.14691.14691.2	2.4497	0.266	2012.129	2013.1569	1	274.1	44.4%	1	K.GGLNTPLHESDFSGVTPQR.Q	2

gi|38044290|ref|NP_06

4.7%

707

78577

4.9

zinc finger CCHC domain-containing protein 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19721.19721.2	4.662	0.5798	1887.908	1888.2637	1	1896.3	71.9%	2	K.LDGPILQILFMNNAISK.Q	2
*	step06.19268.19268.2	2.3615	0.1428	1801.669	1800.7106	3	201.9	40.0%	1	K.DGT#DGETEVGEIQQNK.S	2

U	gi\|18426902\|ref\|NP_06	2	2	4.7%	665	72133	6.1	ATPase WRNIP1 isoform 1 [Homo sapiens]
U	gi\|18426904\|ref\|NP_56	2	2	4.8%	640	69459	6.3	ATPase WRNIP1 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.8943.8943.1	1.8058	0.2291	990.703	990.0326	1	614.7	59.3%	1	R.AKGPS#PPGAK.R	1
	step04.18364.18364.2	4.2189	0.414	2282.207	2282.6147	1	1016.4	55.0%	1	R.SLLETNEIPSLILWGPPGCGK.T	2

U	gi\|16876441\|ref\|NP_44	2	3	4.7%	599	65323	9.1	dachshund homolog 2 isoform a [Homo sapiens]
U	gi\|213972566\|ref\|NP_0	2	3	4.9%	571	61947	8.6	dachshund homolog 2 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12131.12131.2	2.767	0.2972	1081.786	1082.2384	1	824.5	80.0%	2	R.GLGAIQPGVNR.C	2
	step04.16465.16465.2	3.3194	0.091	1876.655	1876.1561	43	368.6	40.6%	1	R.PGRPPKRSLGVLQENAR.L	2

gi|30795212|ref|NP_00

4.7%

579

63705

8.9

insulin-like growth factor 2 mRNA-binding protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step06.20116.20116.2	3.6831	0.5203	1457.085	1456.7975	1	786.1	80.8%	1	R.LLVPTQFVGAIIGK.E	2 2
	step04.15348.15348.2	4.1019	0.4981	1432.453	1431.7251	1	944.8	70.8%	2	R.MVIITGPPEAQFK.A	2 2 2 2
	step04.14214.14214.2	3.6978	0.1416	1448.453	1447.7245	1	1370.1	75.0%	2	R.M*VIITGPPEAQFK.A	2 2 2 2

Similarities: gi|238624257|ref|NP_0(2:1)
gi|56237027|ref|NP_00(2:1)
gi|56118219|ref|NP_00(3:0)

gi|28372497|ref|NP_77

4.6%

1749

200209

6.0

E3 ubiquitin-protein ligase UBR1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11612.11612.2	2.285	0.1488	1500.554	1500.7028	3	326.4	50.0%	1	R.MEISAELPQTPQR.L	2
*	step04.16593.16593.2	2.7859	0.3564	1565.738	1565.796	5	582.0	50.0%	1	R.VSEDLVSIHLPLSR.T	2
*	step02.17254.17254.2	2.2794	0.1184	2079.156	2078.188	4	230.4	25.0%	1	K.VAT#FKKPGVS#GHGVYELK.D	3 3 2
*	step03.17514.17514.2	3.5073	0.3755	2310.561	2309.5872	1	439.1	52.8%	1	R.IHVDLFDLESGEYLCPLCK.S	2
*	step02.18834.18834.2	4.8366	0.4573	1813.784	1814.0334	1	1757.8	78.1%	2	K.INSENADALAQLLTLAR.W	2

gi|6912752|ref|NP_036

4.6%

895

96915

8.5

zinc finger protein 281 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19156.19156.2	3.1081	0.2416	1467.092	1466.706	1	1001.6	62.5%	1	R.TSWGFLQSLVSIK.Q	2
*	step03.16440.16440.3	3.5228	0.1271	3515.03	3515.9138	12	418.7	21.6%	1	R.HVLIHTGERPFQCS#QCSMGFIQKYLLQR.H	3

U	gi\|144226847\|ref\|NP_0	5	11	4.5%	1896	206945	5.6	obscurin-like protein 1 isoform 1 precursor [Homo sapiens]
U	gi\|291084534\|ref\|NP_0	5	11	5.6%	1543	168520	5.4	obscurin-like protein 1 isoform 2 precursor [Homo sapiens]
U	gi\|291084513\|ref\|NP_0	5	11	8.4%	1025	113273	5.7	obscurin-like protein 1 isoform 3 precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14417.14417.2	3.3892	0.471	1553.702	1553.7454	1	1225.5	75.0%	2	R.NSAGQTLSAVQLHVK.E	2
step04.13449.13449.2	2.558	0.2166	1318.445	1318.4635	1	613.4	70.0%	2	R.FTRPLQDVEGR.E	2
step03.19626.19626.2	5.6517	0.552	2555.209	2554.8784	1	2066.2	54.3%	4	R.KLDVLEGENAVLLVETLEAGVEGR.W	2
step06.19652.19652.2	2.7251	0.3773	2470.32	2470.8496	1	246.2	40.0%	1	K.NTVLLTWKPPEPAPETPFIYR.L	2
step04.16261.16261.2	3.414	0.231	1888.761	1889.1752	11	343.6	50.0%	2	R.VVLTCELCRPWAEVR.W	2

gi|73747829|ref|NP_03

4.5%

1009

112907

9.0

DNA ligase 3 isoform alpha precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.19815.19815.2	4.4574	0.5269	1676.507	1676.9352	1	1886.8	80.8%	2	K.SLLTIQEVDEFLLR.L	2 2
	step02.16400.16400.2	3.7736	0.4798	1298.698	1298.5536	1	2470.7	86.4%	2	R.VIQEGLEGLVLK.D	2 2
*	step04.17361.17361.2	5.0653	0.4832	2270.754	2270.5256	1	982.2	55.6%	2	R.DKNPAAQQVSPEWIWACIR.K	2

Similarities: gi|73747844|ref|NP_00(2:1)

gi|61835172|ref|NP_00

4.5%

536

59920

6.8

fragile X mental retardation syndrome-related protein 1 isoform c [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15892.15892.2	2.7414	0.3865	1198.456	1198.4209	1	1036.6	83.3%	1	R.VNILSDMHLR.S	2 2
	step04.209.209.2	3.3913	0.3665	1696.458	1696.9266	1	966.4	73.1%	2	R.GFLEFVEDFIQVPR.N	2 2

Similarities: gi|61835148|ref|NP_00(2:0)

gi|24234699|ref|NP_00

4.5%

400

44106

5.1

keratin, type I cytoskeletal 19 [Homo sapiens] keratin 19; keratin, type I cytoskeletal 19; keratin, type I, 40-kd; cytokeratin 19; 40-kDa keratin intermediate filament precursor gene [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14545.14545.2	2.3952	0.1011	1064.806	1065.2478	1	1066.5	87.5%	1	R.LASYLDKVR.A	2 2 2 2 2
	step02.13582.13582.2	2.9821	0.4259	1030.23	1030.2002	1	1047.2	93.8%	4	R.VLDELTLAR.T	2 2 2 2

Similarities: gi|195972866|ref|NP_0(1:1)
gi|15431310|ref|NP_00(2:0)
gi|24430192|ref|NP_00(2:0)
gi|24430190|ref|NP_00(2:0)

gi|168823443|ref|NP_0

4.4%

1467

162768

6.1

helicase ARIP4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19760.19760.2	4.0612	0.4675	2355.822	2355.7139	1	960.4	60.0%	2	K.DYAAPIPTVPLEFLPEEIALR.A	2
*	step05.16847.16847.2	3.6405	0.4301	1539.553	1539.7189	1	1042.4	75.0%	1	K.FLQGVGFNPFQER.G	2
*	step05.15941.15941.3	5.0626	0.4101	3383.124	3383.668	1	735.8	29.3%	1	R.TSVPYTRPSYAQYYPASDQSLTSIPAFSQR.N	3

U	gi\|194363725\|ref\|NP_0	3	5	4.4%	1152	126924	5.6	SWI/SNF complex subunit SMARCC2 isoform c [Homo sapiens]
U	gi\|21237808\|ref\|NP_62	3	5	4.5%	1130	124841	5.6	SWI/SNF complex subunit SMARCC2 isoform b [Homo sapiens]
U	gi\|21237805\|ref\|NP_00	3	5	4.2%	1214	132879	5.7	SWI/SNF complex subunit SMARCC2 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.22458.22458.2	5.4741	0.6168	2152.829	2152.4756	1	1578.1	61.1%	2	K.SLSSLVVQLLQFQEEVFGK.H	2
step03.16159.16159.2	2.713	0.324	1433.239	1432.6	1	894.1	80.0%	2	R.TQDECILHFLR.L	2 2
step02.17253.17253.2	4.6736	0.4857	1885.571	1886.0964	1	2470.5	65.0%	1	R.DIGEGNLSTAAAAALAAAAVK.A	2

Similarities: gi|188536047|ref|NP_0(1:2)

U	gi\|153791158\|ref\|NP_0	2	5	4.4%	551	59560	7.7	keratin, type II cytoskeletal 75 [Homo sapiens]
U	gi\|32567786\|ref\|NP_78	2	9	4.5%	535	57836	7.2	keratin, type II cytoskeletal 79 [Homo sapiens] keratin 6L [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step03.11976.11976.2	4.3422	0.2677	1478.96	1477.6873	1	1772.9	90.9%	4	R.FLEQQNKVLETK.W	2 2
	step02.18066.18066.1	2.2392	0.09	1329.837	1330.5093	1	555.3	72.7%	1	R.NLDLDSIIAEVK.A	1 1 1 1 1 1 1 1

U	gi\|19745184\|ref\|NP_60	2	4	4.4%	341	36688	5.6	cyclic AMP-responsive element-binding protein 1 isoform B [Homo sapiens]
U	gi\|4758054\|ref\|NP_004	2	4	4.6%	327	35136	5.3	cyclic AMP-responsive element-binding protein 1 isoform A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14554.14554.2	4.3288	0.3242	1582.83	1582.7834	1	1458.7	75.0%	3	R.KILNDLSSDAPGVPR.I	2
	step02.11219.11219.2	2.7285	0.445	1454.445	1454.6106	1	849.0	61.5%	1	K.ILNDLSSDAPGVPR.I	2

U	gi\|192807312\|ref\|NP_0	5	5	4.3%	1647	184644	7.9	transcription activator BRG1 isoform B [Homo sapiens]
U	gi\|21071056\|ref\|NP_00	5	5	4.3%	1647	184644	7.9	transcription activator BRG1 isoform B [Homo sapiens]
U	gi\|192807323\|ref\|NP_0	5	5	4.2%	1679	188147	8.2	transcription activator BRG1 isoform A [Homo sapiens]
U	gi\|192807320\|ref\|NP_0	5	5	4.3%	1613	181260	8.0	transcription activator BRG1 isoform F [Homo sapiens]
U	gi\|192807318\|ref\|NP_0	5	5	4.3%	1614	181347	8.0	transcription activator BRG1 isoform E [Homo sapiens]
U	gi\|192807316\|ref\|NP_0	5	5	4.3%	1616	181602	8.1	transcription activator BRG1 isoform D [Homo sapiens]
U	gi\|192807314\|ref\|NP_0	5	5	4.3%	1617	181689	8.1	transcription activator BRG1 isoform C [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.13889.13889.2	2.2206	0.1719	1619.622	1619.8705	1	370.1	53.6%	1	R.GQPLPDHLQMAVQGK.R	2
step02.16410.16410.2	2.226	0.2879	1269.263	1269.4292	1	1190.8	80.0%	1	R.GLDPVEILQER.E	2
step02.16500.16500.2	4.6815	0.5083	1725.916	1725.9247	1	823.8	70.0%	1	R.IQELENLPGSLAGDLR.T	2
step06.17204.17204.2	2.5305	0.2119	1512.259	1512.738	1	1110.4	70.8%	1	K.LTQVLNTHYVAPR.R	2
step02.14850.14850.2	3.2221	0.3236	1775.3	1775.0356	1	528.5	64.3%	1	K.EVEAQLPEKVEYVIK.C	2

U	gi\|209413709\|ref\|NP_0	3	4	4.3%	1015	111847	5.3	sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform 3 [Homo sapiens]
U	gi\|4502285\|ref\|NP_001	3	4	4.4%	997	109691	5.4	sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform 2 [Homo sapiens]
U	gi\|24638454\|ref\|NP_73	3	4	4.2%	1042	114757	5.3	sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15281.15281.2	2.3639	0.2967	2054.032	2053.2363	1	242.7	41.2%	1	R.NAENAIEALKEYEPEM*GK.V	2 2
step04.13826.13826.2	3.3946	0.3974	1340.292	1340.5309	1	1473.7	79.2%	2	K.NM*LFSGTNIAAGK.A	2 2
step06.19982.19982.2	2.6274	0.3692	1658.414	1657.8871	1	362.9	54.2%	1	R.VSFYQLSHFLQCK.E	2

Similarities: gi|10835220|ref|NP_00(2:1)

gi|253683544|ref|NP_2

1035

109912

9.9

POM121-like protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17398.17398.2	2.6613	0.0859	1851.789	1851.6831	40	384.4	27.7%	1	R.S#LHSWGS#DHS#LTKR.P	2
*	step02.13862.13862.3	3.9524	0.0825	3444.268	3443.3132	43	448.9	17.9%	1	K.S#CHRPSSPVPLVSDFES#LGGS#ESSGQQNQK.I	3

gi|13514831|ref|NP_00

875

100888

8.6

probable ATP-dependent RNA helicase DDX10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.952.952.2	2.4111	0.3033	1606.637	1605.945	189	159.4	34.6%	1	K.TLAFLVPVLEALYR.L	2
*	step04.12524.12524.2	2.8084	0.2215	1075.418	1075.3076	2	965.9	81.2%	2	K.AM*VQQLLQK.K	2
*	step04.15008.15008.2	2.7044	0.1564	1884.254	1885.0651	1	402.0	52.4%	1	R.SVY#LM*KDKEVFDVSK.L	2

gi|25777602|ref|NP_00

908

100200

5.2

26S proteasome non-ATPase regulatory subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.17296.17296.2	3.1074	0.2163	2003.001	2002.3668	108	150.8	34.4%	1	R.MLVTFDEELRPLPVSVR.V	2
*	step03.632.632.2	4.661	0.4332	2458.868	2458.8772	1	393.3	47.6%	3	R.AELATEEFLPVTPILEGFVILR.K	2

gi|34101288|ref|NP_05

782

88487

5.1

cleavage and polyadenylation specificity factor subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14131.14131.2	2.3649	0.1624	949.418	949.1288	4	786.7	85.7%	2	K.FSQIVNLK.G	2
*	step04.328.328.2	3.2517	0.3378	1597.381	1597.8828	1	1078.1	70.8%	1	R.VLELAQLLDQIWR.T	2
*	step05.15504.15504.2	2.7823	0.3252	1524.943	1525.7653	1	1173.4	75.0%	1	R.LKDSLVSSLQFCK.A	2

gi|20127408|ref|NP_00

763

83000

9.0

trifunctional enzyme subunit alpha, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18988.18988.2	3.8608	0.4519	1562.568	1562.9473	1	786.3	82.1%	2	K.MVGVPAALDMMLTGR.S	2
*	step02.17825.17825.2	5.0697	0.5195	2063.607	2063.2095	1	2199.0	70.6%	2	R.DSIFSNLTGQLDYQGFEK.A	2

gi|103471999|ref|NP_0

491

56301

5.2

serine/threonine-protein kinase 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19395.19395.2	3.9715	0.3803	1359.687	1359.5906	1	1636.7	86.4%	2	K.TLIEDEIATILK.S	2
	step05.16474.16474.2	2.9296	0.3819	1166.813	1166.3773	1	1453.2	87.5%	1	K.GLEYLHFMR.K	2

U	gi\|223941782\|ref\|NP_0	3	7	4.2%	1273	145175	7.3	paired amphipathic helix protein Sin3a [Homo sapiens]
U	gi\|23397666\|ref\|NP_05	3	7	4.2%	1273	145175	7.3	paired amphipathic helix protein Sin3a [Homo sapiens]
U	gi\|223941785\|ref\|NP_0	3	7	4.2%	1273	145175	7.3	paired amphipathic helix protein Sin3a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.19214.19214.2	2.7249	0.1786	2654.182	2652.8943	1	375.9	37.0%	4	K.NQEDLLSEFGQFLPDANSSVLLSK.T	2
step02.18994.18994.2	5.113	0.4976	1582.635	1581.7059	1	2047.0	83.3%	2	K.SLLNEIESIYDER.Q	2
step02.14280.14280.2	3.1792	0.1535	1912.646	1912.9893	29	284.5	43.8%	1	R.SLLDGNIDSSQYEDSLR.E	2

U	gi\|32307148\|ref\|NP_85	2	4	4.2%	1046	116924	6.7	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform 1 [Homo sapiens]
U	gi\|32307150\|ref\|NP_85	2	4	4.2%	1036	115706	6.7	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17039.17039.2	4.2242	0.536	2286.825	2286.5652	1	863.7	57.9%	2	R.AIELQPHFPDAYCNLANALK.E	2
	step05.17609.17609.3	4.6778	0.4115	2557.456	2556.858	1	985.9	32.6%	2	K.ALEVFPEFAAAHSNLASVLQQQGK.L	3

gi|46852147|ref|NP_06

1012

113791

7.2

isoleucyl-tRNA synthetase, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18671.18671.2	2.4585	0.3893	1441.584	1441.6151	1	294.2	59.1%	1	R.SYKPVFWSPSSR.T	2
*	step03.11571.11571.2	3.2661	0.3287	1929.507	1930.0647	1	544.8	46.9%	2	R.TALAEAELEYNPEHVSR.S	2
*	step05.13800.13800.2	2.7285	0.0865	1688.62	1687.6547	3	427.8	40.4%	1	K.CS#KSGDLY#VLAADK.V	2

U	gi\|14670350\|ref\|NP_12	2	3	4.2%	998	112416	6.4	general transcription factor II-I isoform 1 [Homo sapiens]
U	gi\|254692934\|ref\|NP_0	2	3	4.3%	976	110035	7.4	general transcription factor II-I isoform 5 [Homo sapiens]
U	gi\|169881252\|ref\|NP_0	2	3	4.4%	957	107970	7.9	general transcription factor II-I isoform 4 [Homo sapiens]
U	gi\|14670354\|ref\|NP_12	2	3	4.3%	977	110106	7.4	general transcription factor II-I isoform 3 [Homo sapiens]
U	gi\|14670352\|ref\|NP_12	2	3	4.3%	978	110280	6.7	general transcription factor II-I isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14306.14306.2	3.3623	0.4547	1744.462	1744.9696	1	1359.7	65.6%	2	R.DQSAVVVQGLPEGVAFK.H	2
	step03.18676.18676.2	4.2129	0.5344	2896.945	2897.2712	1	963.5	45.8%	1	K.VPYPVFESNPEFLYVEGLPEGIPFR.S	2

gi|5031579|ref|NP_005

692

76108

5.1

A-kinase anchor protein 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12466.12466.2	2.7456	0.2545	1113.589	1113.2761	1	489.2	81.2%	2	R.IQFACSVCK.F	2
*	step03.2396.2396.3	4.0325	0.4333	2084.567	2084.3132	1	1693.7	42.1%	1	K.ETPEEVAADVLAEVITAAVR.A	3

gi|82546824|ref|NP_00

733

75457

9.3

forkhead box protein K1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18590.18590.2	4.358	0.4416	2107.884	2107.438	1	314.2	50.0%	1	K.EEAPASPLRPLYPQISPLK.I	2
*	step03.10648.10648.2	2.965	0.1061	1306.378	1305.4135	1	653.9	72.7%	2	R.SGGLQTPECLSR.E	2

U	gi\|14670360\|ref\|NP_05	2	2	4.2%	687	74060	8.4	POZ-, AT hook-, and zinc finger-containing protein 1 long C isoform [Homo sapiens]
U	gi\|14670366\|ref\|NP_11	2	2	5.4%	537	57995	8.6	POZ-, AT hook-, and zinc finger-containing protein 1 long B isoform [Homo sapiens]
U	gi\|14670364\|ref\|NP_11	2	2	5.4%	537	57602	8.5	POZ-, AT hook-, and zinc finger-containing protein 1 short isoform [Homo sapiens]
U	gi\|14670362\|ref\|NP_11	2	2	4.5%	641	69079	8.1	POZ-, AT hook-, and zinc finger-containing protein 1 long A isoform [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.18462.18462.2	3.8935	0.5324	1504.574	1504.668	1	1535.1	79.2%	1	K.VFGDILDFAYTSR.I	2
	step06.17862.17862.2	2.3952	0.2245	1678.966	1679.9226	3	315.5	50.0%	1	R.KANLLDSM*FGSPGGLR.E	2

gi|82546879|ref|NP_00

669

72454

8.3

GTP-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16809.16809.2	4.1953	0.5179	1820.922	1821.0643	1	1187.2	76.7%	2	K.LVLVSPTSEQYDSLLR.Q	2
*	step04.16606.16606.2	3.2552	0.3495	1343.584	1343.553	1	1839.9	90.9%	2	K.VITFIDLAGHEK.Y	2

U	gi\|61744475\|ref\|NP_00	2	3	4.2%	661	71123	5.0	4F2 cell-surface antigen heavy chain isoform a [Homo sapiens]
U	gi\|65506891\|ref\|NP_00	2	3	4.4%	630	67994	5.0	4F2 cell-surface antigen heavy chain isoform c [Homo sapiens]
U	gi\|61744483\|ref\|NP_00	2	3	5.3%	529	57945	5.3	4F2 cell-surface antigen heavy chain isoform f [Homo sapiens]
U	gi\|61744481\|ref\|NP_00	2	3	4.9%	568	61816	5.2	4F2 cell-surface antigen heavy chain isoform e [Homo sapiens]
U	gi\|61744479\|ref\|NP_00	2	3	4.7%	599	64873	5.1	4F2 cell-surface antigen heavy chain isoform d [Homo sapiens]
U	gi\|61744477\|ref\|NP_00	2	3	4.4%	631	68101	5.0	4F2 cell-surface antigen heavy chain isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14590.14590.2	2.8867	0.21	1770.463	1770.8777	1	835.5	60.0%	1	R.GENSWFSTQVDTVATK.V	2
	step06.20345.20345.2	3.4658	0.395	1372.711	1372.6805	1	1102.4	86.4%	2	R.LLTSFLPAQLLR.L	2

gi|41872631|ref|NP_00

2511

273424

6.4

fatty acid synthase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.21452.21452.2	3.1942	0.3796	2787.587	2787.2893	1	317.6	34.0%	1	R.ALGLGVEQLPVVFEDVVLHQATILPK.T	2
*	step06.21467.21467.3	3.8807	0.4052	2788.532	2787.2893	1	985.3	32.0%	2	R.ALGLGVEQLPVVFEDVVLHQATILPK.T	3
*	step05.14061.14061.2	2.6101	0.1607	1969.072	1969.0852	94	240.8	29.6%	2	R.VT#VAGGVHISGLHTESAPR.R	2
*	step04.13845.13845.2	3.1746	0.229	957.885	958.13727	1	880.1	87.5%	1	K.GLVQALQTK.V	2
*	step05.16504.16504.2	3.3495	0.4014	2189.75	2189.4128	1	568.0	50.0%	2	R.RPTPQDSPIFLPVDDTSFR.W	2
*	step05.15156.15156.2	2.3248	0.1839	1743.773	1742.8723	1	516.5	53.6%	1	R.DTSFEQHVLWHTGGK.G	2
*	step02.16264.16264.2	4.0541	0.371	1623.835	1623.9154	1	2384.0	78.6%	1	K.VVVQVLAEEPEAVLK.G	2

gi|14149627|ref|NP_00

952

109297

5.2

ubiquitin carboxyl-terminal hydrolase 15 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.21293.21293.2	4.4114	0.5499	2144.314	2143.5671	1	949.2	58.8%	2	K.ISVTFDPFCYLTLPLPMK.K	2
*	step02.19624.19624.2	3.08	0.381	2142.689	2143.4604	1	630.2	52.5%	1	K.IGNILDLCTALSALSGIPADK.M	2

gi|282394038|ref|NP_0

753

82129

7.6

E3 ubiquitin-protein ligase MIB2 isoform 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.13752.13752.2	2.9772	0.3313	1448.012	1447.6448	1	855.8	70.8%	2	R.MAEFIGQTGTVHR.I	2 2
	step03.11594.11594.2	2.4835	0.2332	1942.136	1942.1022	21	142.0	35.3%	1	R.LQAGHGEWTDDM*APALGR.V	2 2 2

Similarities: gi|282394030|ref|NP_5(2:0)
gi|282394032|ref|NP_0(1:1)

U	gi\|42542403\|ref\|NP_05	2	4	4.1%	699	78768	6.7	methyltransferase-like protein 13 isoform 1 [Homo sapiens]
U	gi\|42542405\|ref\|NP_05	2	4	4.7%	613	68689	6.7	methyltransferase-like protein 13 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.19442.19442.2	3.713	0.2838	1530.138	1528.7391	1	1143.1	70.8%	2	R.DNHFAIFIIPQGR.E	2
	step05.20236.20236.2	4.2142	0.5105	1832.355	1832.1702	1	1129.7	73.3%	2	K.SILTPEGVFILNLVCR.D	2

gi|55953087|ref|NP_03

634

73965

9.5

nucleolar GTP-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10556.10556.2	2.206	0.4156	1027.309	1027.1564	1	803.6	81.2%	1	R.LPTIDPNTR.T	2
*	step03.16148.16148.2	3.8777	0.369	1992.295	1991.1927	1	805.8	56.2%	2	R.WQVVDTPGILDHPLEDR.N	2

gi|154355000|ref|NP_0

711

73115

7.3

far upstream element-binding protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13101.13101.2	3.5149	0.4188	1080.412	1080.2625	1	1627.4	95.0%	2	R.IGGGIDVPVPR.H	2
*	step04.8233.8233.2	2.8393	0.2417	1982.011	1982.1428	1	662.6	55.9%	2	K.IGQQPQQPGAPPQQDYTK.A	2

gi|126032348|ref|NP_0

4834

527234

6.3

E3 ubiquitin-protein ligase HERC2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18683.18683.2	4.6444	0.4124	2221.537	2222.3433	1	1865.9	65.8%	1	R.SGEDADLCSELLQESLDALR.A	2
*	step06.19319.19319.2	2.712	0.2687	1552.699	1552.8005	1	567.1	60.7%	1	R.SAQGTSAPLLPLLQR.F	2
*	step04.15970.15970.2	4.6282	0.4419	2126.482	2126.393	1	1518.5	65.0%	1	R.ALSALLPCAVSGNEVNISPGR.R	2
*	step02.11906.11906.2	2.4242	0.0854	1481.495	1481.6537	8	494.3	47.2%	1	R.LEGIDTILKLAS#K.N	2
*	step03.12327.12327.2	3.4729	0.4309	1834.382	1834.0035	1	992.3	62.5%	1	R.LGGQVMHDEFGEGTVTR.I	2
*	step02.15484.15484.2	2.5696	0.3121	1649.304	1648.7542	1	884.3	57.7%	1	R.ADFLSNDDYAVYVR.E	2
*	step06.18199.18199.2	3.5247	0.3494	1367.885	1367.6191	1	818.8	61.5%	1	R.LGLGISSGTVPIPR.Q	2
*	step02.10876.10876.2	2.8678	0.4093	2123.625	2123.22	4	252.7	31.0%	1	R.DPLGASYLGVPSDADSSAASNK.I	2
*	step02.18972.18972.2	5.5701	0.5011	2331.942	2331.5212	1	2292.6	61.9%	2	K.AAGPEPQALDEFTSLLIADDTR.V	2
*	step06.21012.21012.3	5.3159	0.4512	2528.153	2527.898	1	662.5	31.5%	4	R.LGIGGTESVSTPTLLESIQHVFIK.K	3
*	step03.13323.13323.2	3.4131	0.5325	1415.841	1414.5481	1	1596.0	86.4%	1	R.LHEFDEQVAAVR.E	2

gi|18105007|ref|NP_00

2225

242981

6.5

CAD protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17570.17570.2	2.9602	0.2783	1193.732	1192.4758	1	545.5	85.0%	2	K.LALGIPLPELR.N	2
*	step02.13167.13167.2	2.449	0.2993	2219.537	2220.5935	4	364.9	35.7%	1	R.VIMGEEVEPVGLMTGSGVVGVK.V	2
*	step02.18886.18886.2	4.2372	0.3414	1515.805	1515.8185	1	1328.3	80.8%	1	R.LAADFSVPLIIDIK.C	2
*	step02.17046.17046.2	3.2127	0.3258	1073.425	1073.2251	1	1339.7	93.8%	2	R.LSLDDLLQR.L	2
*	step06.15256.15256.3	4.8883	0.4986	2525.376	2525.8557	1	1200.1	40.9%	3	R.KVAEPELM*GTPDGTCYPPPPVPR.Q	3
*	step05.16214.16214.2	3.662	0.3962	1061.501	1061.3241	1	1713.9	94.4%	2	R.M*ALLATVLGR.F	2
*	step05.18843.18843.2	3.2944	0.4286	1208.863	1208.4988	1	916.2	90.0%	2	R.M*ALLATVLGRF.-	2

gi|284005309|ref|NP_0

1208

133077

8.1

ATP-dependent DNA helicase Q4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19980.19980.2	3.953	0.3945	1640.884	1640.9891	1	1292.0	68.8%	2	R.ILSGISTLLVLPTGAGK.S	2
*	step05.17013.17013.2	3.9149	0.3172	1584.671	1584.8344	1	1233.6	79.2%	2	K.SLCYQLPALLYSR.R	2
*	step05.12566.12566.2	5.0878	0.5147	1976.471	1977.1262	1	1127.8	58.8%	2	K.YPPQEAEQLSHQAAPGPR.R	2

gi|134133226|ref|NP_0

1075

121363

6.2

POTE ankyrin domain family member E [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15010.15010.2	2.246	0.4034	946.346	946.1282	1	814.4	87.5%	1	R.AVFPSIVGR.P	2 2 2 2 2
step06.26382.26382.2	3.2223	0.3938	1516.338	1516.6869	1	975.8	85.0%	12	K.IWHHTFYNELR.V	2 2 2 2 2
step04.17662.17662.2	2.3934	0.1327	2552.589	2551.802	1	384.2	43.2%	1	K.LCYVALDFEQEMATAASSSSLEK.S	2 2

U	gi\|25777704\|ref\|NP_73	2	5	4.0%	642	71311	6.7	zinc finger protein 398 isoform a [Homo sapiens]
U	gi\|31657109\|ref\|NP_00	2	5	3.9%	671	74295	5.9	zinc finger protein 282 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.20480.20480.2	5.6694	0.3641	1860.904	1861.1765	1	3180.2	80.0%	3	K.WAVLGTLLQEYGLLQR.R	2 2
	step04.16622.16622.2	3.4742	0.264	1270.476	1270.4636	1	1191.0	88.9%	2	R.RLENLENLLR.N	2

Similarities: gi|24797065|ref|NP_03(1:1)

U	gi\|33946285\|ref\|NP_89	2	2	4.0%	604	68372	6.0	baculoviral IAP repeat-containing protein 3 [Homo sapiens]
U	gi\|4502139\|ref\|NP_001	2	2	4.0%	604	68372	6.0	baculoviral IAP repeat-containing protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.16466.16466.2	2.4197	0.1785	1866.545	1866.0868	70	123.5	31.0%	1	-.MNIVENS#IFLSNLMK.S	2
	step03.13354.13354.2	2.2844	0.2029	1125.497	1124.2467	1	914.5	70.8%	1	R.ELIDT#ILVK.G	2

U	gi\|153792590\|ref\|NP_0	2	5	3.9%	854	98161	5.2	heat shock protein HSP 90-alpha isoform 1 [Homo sapiens]
U	gi\|154146191\|ref\|NP_0	2	5	4.5%	732	84660	5.0	heat shock protein HSP 90-alpha isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.19182.19182.2	2.9209	0.3598	2432.077	2432.7703	1	360.7	50.0%	1	R.VFIM*DNCEELIPEYLNFIR.G	2
2	step02.13929.13929.2	4.8973	0.2401	1515.494	1514.6627	1	1634.4	84.6%	4	R.GVVDSEDLPLNISR.E	2 2 2

Similarities: gi|20149594|ref|NP_03(1:1)
gi|155722983|ref|NP_0(1:1)

gi|124286830|ref|NP_5

3.9%

861

95615

7.1

zinc finger protein 618 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.9782.9782.2	3.9915	0.547	1714.804	1715.8304	1	1237.2	75.0%	2	R.NQQTLGSYECGICGK.K	2
*	step04.19676.19676.2	5.1898	0.553	2059.662	2059.35	1	1525.7	63.9%	3	R.YGAFSVTEILGNFNTLALK.H	2

gi|122937289|ref|NP_0

3.9%

855

93313

8.8

kinesin-like protein KIF18B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.22190.22190.2	4.558	0.4571	1639.678	1639.9612	1	1914.8	73.3%	1	R.SLLALINVLNALADAK.G	2
*	step05.19259.19259.2	2.2044	0.0831	1914.776	1913.8547	27	154.4	28.1%	1	R.RGS#LPDTQPS#QGPSTPK.G	2

gi|156119605|ref|NP_0

3.9%

822

91982

6.7

general transcription factor 3C polypeptide 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.9980.9980.2	2.8685	0.1239	1583.491	1584.7699	1	911.0	62.5%	1	R.M*EWSGICTTQQVK.H	2
*	step03.856.856.3	4.8091	0.4818	2126.422	2126.3518	1	1594.2	40.3%	4	K.TFEEAAAQLLESSVQNLFK.Q	3
*	step04.789.789.2	3.7259	0.2515	2127.024	2126.3518	1	1306.5	58.3%	2	K.TFEEAAAQLLESSVQNLFK.Q	2

U	gi\|165377167\|ref\|NP_0	2	2	3.9%	614	67219	8.5	zinc finger protein 276 isoform a [Homo sapiens]
U	gi\|40805102\|ref\|NP_68	2	2	4.5%	539	59850	8.4	zinc finger protein 276 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.13768.13768.2	2.5173	0.0945	728.299	727.9184	1	519.8	100.0%	1	R.LLGVAVR.Q	2
	step03.18603.18603.2	2.5492	0.0873	2174.328	2173.027	45	268.1	25.0%	1	K.KQNAQSS#DESFEPY#PER.K	2

gi|125656165|ref|NP_0

1593

182774

8.4

THO complex subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18597.18597.2	4.1858	0.4527	1854.916	1855.0825	1	1394.9	64.3%	1	R.DFQQALYELSYHVIK.G	2
*	step03.11982.11982.2	2.4498	0.1079	1479.567	1478.3943	2	711.2	54.5%	1	K.EFQSDGS#KQEDK.E	2
*	step06.19906.19906.2	3.3299	0.3905	1195.346	1194.4437	1	1635.5	93.8%	3	K.FLQLCIFPR.C	2
*	step04.10051.10051.2	5.0071	0.6118	2116.563	2117.2202	1	1316.9	56.5%	2	R.NAVASVQNGPGGGPSSSSIGSASK.S	2

gi|269847874|ref|NP_0

1430

160248

8.4

probable ATP-dependent RNA helicase YTHDC2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13302.13302.2	2.8933	0.2231	1149.219	1149.3248	4	330.8	72.2%	2	R.IGQTIGYQIR.L	2
*	step05.18795.18795.2	3.5252	0.4655	1703.976	1703.0758	1	689.2	78.6%	4	K.LLAPVNCPIADFLMK.A	2
*	step06.17735.17735.2	2.3492	0.371	1502.146	1502.6985	1	378.0	54.2%	2	R.FHPASVLSQPQYK.K	2
*	step04.16807.16807.2	2.2176	0.2055	2129.581	2130.3113	66	146.5	25.0%	1	R.PNM*PVRY#FIMKS#SNLR.N	2

gi|140161498|ref|NP_0

1379

151169

6.7

microtubule-associated tumor suppressor candidate 2 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18151.18151.2	2.5267	0.0807	2042.13	2043.1204	6	272.9	27.1%	1	-.MASS#PT#KGLT#MSVPVAPK.K	2
*	step02.16227.16227.2	4.398	0.2217	2123.097	2122.2368	1	1125.9	57.9%	1	K.STSTPAGTKKDAQKDQDTNK.P	2
	step03.18134.18134.2	2.6615	0.1381	1955.731	1954.8573	2	300.6	32.1%	1	R.QLS#EENANLQEY#VEK.E	2

gi|13128864|ref|NP_00

1215

131419

5.3

histone deacetylase 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.530.530.3	4.2815	0.2979	2463.317	2463.7642	1	1484.4	38.1%	2	R.SAQASVSCALEALEPFWEVLVR.S	3
*	step04.236.236.3	4.0341	0.475	2605.861	2606.012	1	794.8	33.7%	2	R.LVLPIAYEFNPELVLVSAGFDAAR.G	3
*	step04.234.234.2	4.1021	0.6005	2605.99	2606.012	1	1360.5	50.0%	1	R.LVLPIAYEFNPELVLVSAGFDAAR.G	2

gi|284813531|ref|NP_0

1137

127412

8.0

DNA mismatch repair protein Msh3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18862.18862.3	4.2415	0.2474	2779.164	2780.1904	1	846.6	37.5%	2	R.M*SSLQPVELLLPSALSEQTEALIHR.A	3
*	step05.19822.19822.2	4.0023	0.4182	2094.099	2094.479	1	430.8	52.9%	4	R.TVILEIPELLSPVEHYLK.I	2

gi|31657117|ref|NP_11

820

93896

4.9

serine/threonine-protein phosphatase 4 regulatory subunit 3A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19468.19468.2	2.4702	0.1372	2163.43	2164.4236	1	532.2	41.7%	1	R.SAATDIFSYLVEYNPSMVR.E	2
*	step02.13655.13655.2	2.2938	0.095	1428.72	1428.5684	1	417.3	63.6%	1	K.ALEDVDYVQTFK.G	2

gi|140972063|ref|NP_1

817

89334

5.0

neurabin-2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14968.14968.2	2.2967	0.0862	1192.481	1191.3201	103	205.0	60.0%	1	K.LGTSVSERVSR.F	2
*	step03.17020.17020.2	3.2583	0.4001	2361.822	2362.5337	1	931.7	50.0%	1	K.LEGYWGEAQSLCQAVDEHLR.E	2

gi|118498337|ref|NP_0

2610

289383

5.4

E3 ubiquitin-protein ligase HECTD1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.20073.20073.2	3.9891	0.4341	1891.865	1892.1807	1	1121.6	62.5%	2	K.LSNQVSTIVSLLSTLCR.G	2
*	step03.16627.16627.3	5.7383	0.47	3316.647	3316.58	1	1504.3	31.9%	2	K.EGEIAIHNSDGQQATILKEDLPGFVFESNR.G	3
*	step05.16901.16901.2	3.132	0.2477	1272.0	1271.5314	1	1245.8	80.0%	1	R.KLIAVLESIER.L	2
*	step02.16901.16901.2	5.6814	0.5857	2161.188	2161.3992	1	1601.0	65.0%	2	K.SGLNQGAISTLQSSDILNLTK.E	2
*	step02.16766.16766.2	4.1484	0.4123	2128.496	2127.1606	1	995.5	58.8%	2	R.TDLGAWLCDDNFPDDESR.H	2

U	gi\|209869993\|ref\|NP_0	3	6	3.7%	1010	107767	6.7	trifunctional purine biosynthetic protein adenosine-3 isoform 1 [Homo sapiens]
U	gi\|4503915\|ref\|NP_000	3	6	3.7%	1010	107767	6.7	trifunctional purine biosynthetic protein adenosine-3 isoform 1 [Homo sapiens]
U	gi\|209869995\|ref\|NP_0	3	6	3.7%	1010	107767	6.7	trifunctional purine biosynthetic protein adenosine-3 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13802.13802.2	2.8358	0.1355	843.24	843.0494	1	690.1	92.9%	2	R.VLAVTAIR.E	2
step02.19325.19325.2	4.3961	0.5149	1352.473	1352.5598	1	2238.9	87.5%	2	K.VDLGGFAGLFDLK.A	2
step06.18968.18968.2	4.4411	0.199	1666.908	1666.9053	1	1666.5	80.0%	2	K.AFAHITGGGLLENIPR.V	2

gi|148762982|ref|NP_9

908

98148

8.4

protein DLN-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12056.12056.2	2.8985	0.3584	2088.346	2088.4028	1	240.9	40.0%	2	R.VGRALATKAPPPERAAAASPR.P	2
*	step04.16627.16627.2	2.3328	0.2568	1518.898	1518.5753	53	198.7	33.3%	1	R.KKVAS#NVAS#AVKR.P	2

gi|116805340|ref|NP_0

739

83166

7.0

glycyl-tRNA synthetase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18601.18601.2	3.8775	0.457	1393.292	1392.5873	1	1360.0	75.0%	2	K.LPFAAAQIGNSFR.N	2
*	step06.16530.16530.2	2.3845	0.0973	1771.015	1770.878	176	127.1	23.1%	1	R.IYLYLT#KVGIS#PDK.L	2

gi|49472841|ref|NP_05

646

71649

5.1

A-kinase anchor protein 8-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14518.14518.2	2.4703	0.31	1155.309	1155.3562	1	589.8	87.5%	2	R.IQFVCSLCK.Y	2
*	step02.15413.15413.2	4.5907	0.451	1804.784	1805.0022	1	2070.6	78.6%	1	R.DQDLTQEIAMEHFVK.K	2

U	gi\|291084629\|ref\|NP_0	2	3	3.7%	538	60671	8.0	60 kDa SS-A/Ro ribonucleoprotein isoform 2 [Homo sapiens]
U	gi\|31377800\|ref\|NP_00	2	3	3.7%	538	60671	8.0	60 kDa SS-A/Ro ribonucleoprotein isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.18949.18949.2	3.4911	0.4147	1469.62	1469.818	1	1627.1	83.3%	2	K.ALLQEMPLTALLR.N	2
	step01.9742.9742.1	1.8796	0.3163	870.022	870.00555	1	394.1	83.3%	1	R.NFTLDM*I.-	1

gi|44889475|ref|NP_05

1287

147095

6.7

DENN domain-containing protein 5A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.7930.7930.2	2.2519	0.1554	1864.591	1865.0756	75	178.9	32.4%	1	R.KLTSGSLSTSGILLDSER.R	2
*	step02.20198.20198.2	2.5213	0.1731	3268.392	3269.4749	3	224.5	18.5%	1	K.GM*DDGS#LERILVGELLTSQPEVDERPCR.T	2

gi|168229174|ref|NP_0

1060

118718

9.2

RNA-binding protein 27 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19942.19942.2	5.1218	0.5874	2372.958	2372.736	1	1243.0	66.7%	2	K.LLEPICDADPSALANYVVALVK.K	2
*	step03.18136.18136.2	3.5799	0.4081	1865.795	1865.0725	1	245.6	50.0%	2	K.ETSGFVDKLFESLYTK.N	2

gi|148596977|ref|NP_6

1043

117493

6.4

zinc finger and SCAN domain-containing protein 20 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.20224.20224.2	2.7783	0.0961	3275.541	3274.395	27	130.8	13.3%	2	K.LRT#CHQNS#QVY#RAIAERLCALGFLR.T	2
*	step03.12919.12919.2	2.4488	0.1151	1410.397	1409.5344	1	416.1	58.3%	1	R.AMGT#VREAAGLPR.C	2

gi|6631095|ref|NP_002

808

90981

5.8

DNA replication licensing factor MCM3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18465.18465.2	3.4753	0.3643	1314.451	1314.5929	1	1353.1	77.3%	2	K.AILCLLLGGVER.D	2
*	step02.15657.15657.2	4.5523	0.479	1838.083	1837.9623	1	1447.7	71.9%	1	R.DSEEPFSSVEIQAALSK.M	2

U	gi\|13376181\|ref\|NP_07	3	5	3.6%	446	49909	6.0	tubulin alpha chain-like 3 isoform 1 [Homo sapiens]
U	gi\|285395246\|ref\|NP_0	3	5	3.9%	406	45518	6.3	tubulin alpha chain-like 3 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.15316.15316.1	2.3041	0.3382	1250.627	1250.4795	1	160.6	56.2%	1	K.YMACCLLYR.G	1 1 1 1 1
step04.14389.14389.2	2.8	0.4396	1265.801	1266.4789	1	707.3	87.5%	2	K.YM*ACCLLYR.G	2 2 2 2 2
step02.13732.13732.2	2.4505	0.279	888.294	888.06573	2	792.2	100.0%	2	K.FDLMYAK.R	2 2 2 2 2 2 2

gi|51599156|ref|NP_00

1912

218003

5.9

chromodomain-helicase-DNA-binding protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13734.13734.2	2.6713	0.2533	1808.315	1808.0688	1	208.3	46.7%	2	R.KLERPPETPTVDPTVK.Y	2
	step06.20665.20665.2	3.9186	0.4891	1900.073	1901.1975	1	1136.2	68.8%	3	K.GPFLVSAPLSTIINWER.E	2
	step02.8591.8591.2	3.3997	0.3921	1471.163	1471.5101	1	967.5	77.3%	2	R.ENEFSFEDNAIR.G	2
*	step01.11174.11174.2	2.5822	0.0975	1634.242	1633.5527	3	518.0	44.4%	1	R.KQVNYNDGS#QEDR.D	2
*	step05.16433.16433.2	2.6305	0.2645	889.204	889.14154	1	1219.8	92.9%	2	R.IGVMSLIR.K	2

gi|224589071|ref|NP_0

1282

145807

6.4

ribosome biogenesis protein BMS1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13289.13289.2	3.6526	0.3402	1615.758	1615.724	1	705.2	61.5%	1	R.LLQDLQLGDEEDAR.K	2
*	step04.16744.16746.2	3.2171	0.3089	1104.171	1104.319	1	1065.8	87.5%	1	K.STLIQCLIR.N	2
*	step02.17444.17444.2	3.7702	0.3248	2523.829	2524.6318	1	541.3	47.6%	1	K.VLAEDEELYGDFEDLETGDVHK.G	2

gi|282394032|ref|NP_0

1066

115415

8.9

E3 ubiquitin-protein ligase MIB2 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.11594.11594.2	2.4835	0.2332	1942.136	1942.1022	21	142.0	35.3%	1	R.LQAGHGEWTDDM*APALGR.V	2 2 2
	step06.14206.14206.2	3.6164	0.4815	1845.533	1846.0372	1	718.0	58.3%	2	K.LRPDGSEVASAAPAPGPPR.Q	2 2

Similarities: gi|282394030|ref|NP_5(2:0)
gi|282394038|ref|NP_0(1:1)

gi|10140845|ref|NP_06

1005

111003

8.1

ephrin type-A receptor 8 isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10840.10840.2	2.9359	0.0868	1455.687	1455.4933	19	415.3	44.4%	1	R.SPESLRATATVS#R.C	2
*	step05.19102.19102.2	2.2872	0.1175	2202.3	2202.2883	16	347.1	28.6%	1	R.GGSGGGGGLTVGDWLDS#IRM*GR.Y	2

gi|188497648|ref|NP_0

979

110144

6.2

ubiquitin carboxyl-terminal hydrolase 37 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15487.15487.2	2.7235	0.1309	2045.239	2044.0884	1	384.8	39.1%	1	K.ENKVS#LVVHY#NTGGIPR.I	2
*	step04.17256.17256.2	2.3651	0.0884	1955.338	1954.862	1	616.7	35.9%	1	K.NSQSLS#T#EVGKTTRQAS.-	2

gi|21264343|ref|NP_00

915

102642

5.5

scaffold attachment factor B1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13448.13448.2	3.401	0.31	1736.327	1735.9115	1	544.9	64.3%	1	R.KFDFDACNEVPPAPK.E	2
*	step02.17062.17062.2	2.2757	0.1335	2144.241	2142.9788	129	188.5	18.8%	1	R.SSCGRNFWVSGLS#ST#T#R.A	2

U	gi\|14277675\|ref\|NP_00	2	3	3.5%	934	101077	5.2	protocadherin gamma-C3 isoform 1 precursor [Homo sapiens]
U	gi\|14277677\|ref\|NP_11	2	3	3.8%	863	94458	5.2	protocadherin gamma-C3 isoform 2 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.2926.2926.2	2.5624	0.2198	2008.673	2008.1694	18	472.6	35.6%	1	R.FRVVSGAS#RRFFEVNR.E	2
	step06.19402.19402.2	2.4961	0.1496	1867.69	1868.9434	16	241.3	28.1%	2	R.S#DPLLKKPGAAS#PLASR.Q	2

gi|101943240|ref|NP_0

2109

238873

7.3

general transcription factor 3C polypeptide 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15334.15334.2	3.4416	0.4061	1688.504	1688.8646	1	597.6	67.9%	2	R.ALATHPGISFYEEPR.E	2
*	step04.17409.17409.2	4.2082	0.508	1657.57	1657.9487	1	2172.0	80.8%	1	R.LCYMGLLQFGPTEK.F	2
*	step02.18914.18914.2	4.2075	0.3989	1860.749	1861.0454	1	686.6	70.0%	2	R.NSNLEIPDTLQELFAR.Y	2
*	step03.12234.12234.2	2.9715	0.5018	1200.473	1200.3254	1	749.3	75.0%	1	R.GYYSPGIVSTR.N	2
*	step02.10635.10635.2	2.2109	0.1358	1833.348	1834.0385	1	375.6	50.0%	1	R.NLNPNDSIVVNSCQMK.F	2

gi|4885583|ref|NP_005

1354

158174

5.9

rho-associated protein kinase 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17101.17101.2	2.5676	0.1295	1719.933	1719.787	3	459.1	44.4%	1	K.DEMEQKCRTS#NIK.L	2
*	step06.1139.1139.2	2.2751	0.1018	2812.241	2812.0044	102	175.9	18.2%	1	R.KSHTEMSKSIS#QLESLNRELQER.N	2
*	step02.9338.9338.2	2.3968	0.2145	1305.195	1305.3683	15	194.6	55.6%	2	K.QCS#M*LDVDLK.Q	2

U	gi\|14211540\|ref\|NP_06	3	3	3.4%	1003	113671	8.8	putative helicase MOV-10 [Homo sapiens]
U	gi\|194272168\|ref\|NP_0	3	3	3.4%	1003	113671	8.8	putative helicase MOV-10 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.9672.9672.2	2.3057	0.2649	1070.66	1071.2124	1	599.1	83.3%	1	R.ITGNPVVTNR.I	2
step05.16668.16668.2	3.5589	0.4245	1158.457	1158.4163	1	1428.3	80.0%	1	R.VLITTLITAGR.L	2
step03.12226.12226.2	2.211	0.2237	1466.353	1466.6198	2	592.2	62.5%	1	K.KGPDGYDPQFITK.L	2

U	gi\|4557469\|ref\|NP_001	2	4	3.4%	937	104553	5.4	AP-2 complex subunit beta isoform b [Homo sapiens]
U	gi\|71773106\|ref\|NP_00	2	4	3.4%	951	105692	5.3	AP-2 complex subunit beta isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.19661.19661.2	3.8577	0.4092	2265.906	2266.6648	1	777.1	47.5%	3	K.LAPPLVTLLSGEPEVQYVALR.N	2
	step03.11403.11403.2	2.6184	0.141	1278.636	1278.4393	1	481.3	70.0%	1	K.LQNNNVYTIAK.R	2

gi|145580626|ref|NP_9

911

99888

8.2

transcription factor E2F7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.21286.21286.2	4.4734	0.5	1870.841	1871.1698	1	1351.4	66.7%	4	R.IYDIVNVLESLHLVSR.V	2
*	step03.20679.20679.2	4.7923	0.4538	1647.866	1647.9801	1	2057.8	85.7%	2	R.LYDIANVLTSLALIK.K	2

gi|42544159|ref|NP_00

858

96865

5.4

heat shock protein 105 kDa [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18393.18393.2	4.2108	0.5153	1783.405	1784.0889	1	1174.7	85.7%	2	K.IEVPLYSLLEQTHLK.V	2
	step05.15636.15636.2	2.8614	0.254	1537.906	1536.7848	1	555.0	46.2%	1	R.GCALQCAILSPAFK.V	2 2 2

Similarities: gi|38327039|ref|NP_00(1:1)
gi|31541941|ref|NP_05(1:1)

gi|224548936|ref|NP_0

715

80355

12.1

serine/arginine repetitive matrix protein 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step02.13804.13804.2	2.2039	0.0931	2537.694	2536.5713	52	140.1	19.6%	1	K.S#YRPPGGSGIGRSS#ELAVTPSTAK.C	2
*2	step02.13804.13804.2	2.2039	0.0931	2537.694	2536.5713	52	140.1	19.6%	1	K.SY#RPPGGSGIGRSS#ELAVTPSTAK.C	2

gi|36796743|ref|NP_05

3.3%

978

105790

8.1

monofunctional C1-tetrahydrofolate synthase, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11411.11411.2	2.2555	0.1109	1696.925	1695.8749	3	254.8	37.8%	1	K.Y#VLVAGITPTPLGEGK.S	2
*	step05.18058.18058.2	2.7745	0.294	1981.728	1981.3258	1	500.6	46.7%	1	R.FQFLYDVQVPIVDKIR.T	2

U	gi\|299890793\|ref\|NP_0	2	2	3.3%	861	97350	9.2	origin recognition complex subunit 1 isoform 1 [Homo sapiens]
U	gi\|31795544\|ref\|NP_00	2	2	3.3%	861	97350	9.2	origin recognition complex subunit 1 isoform 1 [Homo sapiens]
U	gi\|299890795\|ref\|NP_0	2	2	3.3%	856	96810	9.2	origin recognition complex subunit 1 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.3254.3254.2	2.2064	0.1908	1627.742	1626.3832	33	139.6	27.3%	1	R.ET#GLSY#T#EDDKK.A	2
	step03.20707.20707.2	2.2571	0.1384	2237.143	2237.3455	12	214.5	26.7%	1	R.MCFQPYT#YS#QLQQILR.S	3 2

U	gi\|37620163\|ref\|NP_06	5	6	3.2%	2617	277173	5.9	ANKHD1-EIF4EBP3 protein [Homo sapiens]
U	gi\|46519147\|ref\|NP_06	5	6	3.3%	2542	269455	5.7	ankyrin repeat and KH domain-containing protein 1 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16121.16121.2	3.6979	0.5365	1185.605	1185.3954	1	2259.1	90.9%	1	R.LEALLEAAGIGK.L	2 2 2
step04.17750.17751.2	4.818	0.4945	1993.02	1993.202	1	1023.6	69.4%	1	R.RLTSSVSCALDEAAAALTR.M	2 2 2
step06.19028.19028.2	2.723	0.327	1475.33	1474.7231	1	541.2	66.7%	1	R.AGHLCTVQFLISK.G	2
step02.17832.17832.2	4.8053	0.5875	2182.746	2183.4465	1	1539.5	62.5%	2	R.NVSDYTPLSLAASGGYVNIIK.I	2 2
step02.16656.16656.2	4.8153	0.5224	1880.949	1881.1002	1	1814.8	61.1%	1	K.TGLTPLMEAASGGYAEVGR.V	2 2

Similarities: gi|46519154|ref|NP_07(2:3)
gi|38683807|ref|NP_11(4:1)

gi|31621305|ref|NP_57

3.2%

1394

157904

6.1

leucine-rich PPR motif-containing protein, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17975.17975.2	2.507	0.1307	1797.192	1796.5531	24	231.4	28.3%	1	K.EKDIQEES#T#FS#SR.K	2
*	step04.19531.19531.2	3.2285	0.4096	1716.541	1717.0027	1	735.3	69.2%	1	K.VIEPQYFGLAYLFR.K	2
*	step06.22140.22140.2	2.8798	0.2731	1929.141	1929.329	1	677.5	56.2%	1	R.CGAIAEQTPILLLFLLR.N	2

gi|118601081|ref|NP_0

3.2%

747

85105

4.9

heterogeneous nuclear ribonucleoprotein U-like protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16066.16066.2	2.2281	0.2657	1035.307	1035.1803	1	1348.5	93.8%	2	K.FPTLWSGAR.S	2
*	step02.13731.13731.2	4.0199	0.3976	1828.464	1828.957	1	818.6	75.0%	1	R.NFILDQCNVYNSGQR.R	2

U	gi\|56788366\|ref\|NP_00	2	2	3.2%	652	70755	7.9	phosphatidylinositol-binding clathrin assembly protein isoform 1 [Homo sapiens]
U	gi\|56788368\|ref\|NP_00	2	2	3.4%	610	66393	8.8	phosphatidylinositol-binding clathrin assembly protein isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14301.14301.2	2.6312	0.2574	998.437	998.1599	1	937.2	92.9%	1	R.FIQYLASR.N	2
	step04.9951.9951.2	2.2793	0.1938	1523.927	1522.5818	4	392.3	38.9%	1	R.GADGVMRTMNT#EK.L	2

U	gi\|295821205\|ref\|NP_0	2	2	3.2%	598	68768	5.6	cell division control protein 45 homolog isoform 1 [Homo sapiens]
U	gi\|4502713\|ref\|NP_003	2	2	3.4%	566	65569	5.5	cell division control protein 45 homolog isoform 2 [Homo sapiens]
U	gi\|295821207\|ref\|NP_0	2	2	3.7%	520	60245	5.8	cell division control protein 45 homolog isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.8925.8925.2	2.3799	0.1705	1284.945	1285.3872	1	663.9	72.2%	1	K.EFYEVVQSQR.V	2
	step04.14667.14667.2	2.709	0.3771	916.266	916.0971	1	466.2	81.2%	1	R.PASLSLLSK.H	2

gi|103471997|ref|NP_0

1720

194810

7.0

DNA-directed RNA polymerase I subunit RPA1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16259.16259.2	2.4508	0.2094	1941.245	1942.2065	1	341.3	53.3%	2	K.LTYPQPVTPWNVQELR.Q	2
*	step05.12222.12222.2	2.2496	0.1581	1351.592	1350.6306	1	268.2	59.1%	1	K.TPMMSVPVLNTK.K	2
*	step06.18947.18947.2	2.8025	0.198	1699.758	1699.889	1	1171.1	79.2%	1	R.FQFLPHAYYQQEK.C	2
*	step06.23456.23456.2	2.4163	0.091	1446.765	1446.7844	12	527.3	59.1%	2	K.LLMESIKKKNNK.A	2

gi|32698936|ref|NP_87

1499

157129

8.6

B-cell CLL/lymphoma 9-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11693.11693.2	2.2807	0.112	2838.205	2837.9863	9	127.1	18.0%	1	R.LSHM*PLPPAS#NPPGTVHS#APNRGLGR.R	2
*	step06.22676.22676.2	2.4184	0.0825	2240.692	2240.1426	128	171.7	18.9%	1	K.SPQVLGSSLSVRS#PT#GSPS#R.L	2

gi|118918429|ref|NP_8

1065

114657

8.3

protein NLRC3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.7950.7950.2	2.5135	0.244	2239.331	2239.287	12	157.5	22.4%	1	K.ALARS#LLVNRS#LTS#LDLR.G	2
*	step02.10848.10848.2	2.2642	0.2443	1754.912	1753.5948	42	239.8	25.7%	1	K.ELMFS#S#NS#IGDGGAK.A	2

U	gi\|10835220\|ref\|NP_00	2	3	3.1%	994	109283	5.2	sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform b [Homo sapiens]
U	gi\|27886529\|ref\|NP_77	2	3	3.1%	1001	110252	5.2	sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15281.15281.2	2.3639	0.2967	2054.032	2053.2363	1	242.7	41.2%	1	R.NAENAIEALKEYEPEM*GK.V	2 2
	step04.13826.13826.2	3.3946	0.3974	1340.292	1340.5309	1	1473.7	79.2%	2	K.NM*LFSGTNIAAGK.A	2 2

Similarities: gi|209413709|ref|NP_0(2:0)

U	gi\|18079218\|ref\|NP_06	2	3	3.1%	889	101196	7.0	oxysterol-binding protein-related protein 8 isoform a [Homo sapiens]
U	gi\|51243032\|ref\|NP_00	2	3	3.3%	847	96956	7.5	oxysterol-binding protein-related protein 8 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17740.17740.2	2.9807	0.3984	1284.471	1284.5718	1	883.1	80.0%	2	K.VVLPTFILEPR.S	2
	step06.17581.17581.2	3.9149	0.4029	1850.357	1851.0872	1	1065.2	75.0%	1	K.LKPFLGSSDCVNQISGK.L	2

gi|155722990|ref|NP_0

796

88814

5.2

kanadaptin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14428.14428.2	2.5769	0.287	1606.724	1606.7986	1	656.1	76.9%	2	K.IDEKPETFESLVAK.L	2
*	step05.14337.14337.2	2.8507	0.2924	1238.359	1237.5134	1	704.6	80.0%	2	K.IVKPAEIPELK.K	2

gi|56699473|ref|NP_00

578

65816

7.4

zinc finger protein 192 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.10970.10970.2	2.2951	0.1925	1043.556	1044.0371	2	308.5	61.9%	1	R.Y#QETLGPR.E	2
*	step04.12837.12837.2	2.8135	0.3841	1052.458	1052.166	1	1135.4	83.3%	2	K.SFAQSSGLVR.H	2

gi|38788372|ref|NP_05

3.0%

1485

171294

6.4

intron-binding protein aquarius [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20842.20842.3	4.1727	0.4571	3289.306	3288.6514	1	403.6	28.6%	2	K.GSTLPDVTEVSTFFPFHEYFANAPQPIFK.G	3
*	step02.18044.18044.2	3.0444	0.1055	1870.743	1870.1866	3	534.1	46.7%	2	R.PLHLHIIPTEPFPTTR.K	2

gi|170763479|ref|NP_0

3.0%

1030

113289

6.4

MMS19 nucleotide excision repair protein homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19860.19860.2	4.0423	0.4218	1433.472	1433.7592	1	1174.2	81.8%	1	R.FAEFLLPLLIEK.V	2
*	step04.18272.18272.3	3.5723	0.2427	2171.734	2172.4602	1	591.2	37.5%	1	R.ACDSVTSNVLPLLLEQFHK.H	3

gi|12738834|ref|NP_07

3.0%

474

54872

7.8

PRAME family member 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14644.14644.2	2.4503	0.1982	2039.886	2039.2434	14	241.2	30.8%	1	R.KLY#CY#LKEMKTLCK.L	2
*	step02.10245.10245.2	2.2094	0.0819	1328.55	1328.4899	9	224.9	54.2%	1	K.LYCY#LKEMK.T	2

U	gi\|154759259\|ref\|NP_0	5	6	2.9%	2472	284538	5.3	spectrin alpha chain, brain isoform 2 [Homo sapiens]
U	gi\|194595509\|ref\|NP_0	5	6	2.9%	2477	285093	5.4	spectrin alpha chain, brain isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.17349.17349.2	5.0498	0.4381	1709.832	1708.9008	1	1697.0	76.9%	2	R.AQLADSFHLQQFFR.D	2
step04.16050.16050.3	4.3499	0.2185	2523.868	2524.9417	19	792.6	30.0%	1	R.MNEVIS#LWKKLLEATELKGIK.L	3
step05.15616.15616.2	2.3731	0.108	2524.119	2524.9417	114	113.4	23.3%	1	R.MNEVISLWKKLLEAT#ELKGIK.L	2
step02.16548.16548.2	2.9785	0.157	2211.23	2210.242	15	272.9	26.4%	1	K.HEALMS#DLSAYGS#SIQALR.E	2
step02.15809.15809.2	3.3091	0.3663	1990.493	1990.2648	1	612.4	50.0%	1	K.KIEDLGAAM*EEALILDNK.Y	2

gi|39725938|ref|NP_00

2.9%

1390

155641

8.5

DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.19737.19737.2	4.2196	0.4713	1712.675	1713.0139	1	1461.1	67.9%	1	R.AQENLNPLVVLNLFK.R	2
*	step04.16816.16816.2	3.4874	0.2202	1659.478	1659.9078	1	1013.5	62.5%	2	R.GFSIGIGDVTPGQGLLK.A	2
*	step05.12326.12326.2	2.4104	0.0958	1022.259	1020.8709	74	358.7	47.6%	1	K.DDDADY#AR.L	2

gi|108860697|ref|NP_0

2.9%

1267

137528

7.8

zinc finger protein 592 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19922.19922.2	4.2942	0.41	2377.741	2378.573	1	1179.0	50.0%	1	K.TPDFDDLLAAFDIPDPTSLDAK.E	2
*	step05.11238.11238.2	3.0727	0.3171	1366.597	1366.5449	1	1051.2	67.9%	2	K.GSPSVAASSPPAIPK.V	2

gi|45331213|ref|NP_03

2.9%

1105

124713

5.0

ran-binding protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step04.17775.17775.2	2.457	0.1569	1637.056	1636.9346	1	325.6	58.3%	1	K.FVPYYDIFM*PSLK.H	2 2
*	step04.896.896.2	2.3148	0.2167	2085.842	2087.1526	1	250.9	35.2%	2	R.QAAAY#GLGVM*AQFGGDDYR.S	2

Similarities: gi|24797086|ref|NP_00(1:1)

U	gi\|29294647\|ref\|NP_07	2	3	2.9%	860	97360	9.1	protein argonaute-3 isoform a [Homo sapiens]
U	gi\|6912352\|ref\|NP_036	2	3	2.9%	857	97214	9.2	protein argonaute-1 [Homo sapiens]
U	gi\|29337286\|ref\|NP_80	2	3	4.0%	626	71211	9.0	protein argonaute-3 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14007.14007.2	2.3752	0.1783	1362.487	1362.548	1	437.2	68.2%	1	K.TSPQTLSNLCLK.I	2
	step05.15585.15585.2	2.5185	0.1114	1684.405	1684.7021	109	315.2	35.4%	2	K.DY#QPGIT#YIVVQK.R	2

gi|256017163|ref|NP_0

3065

336160

6.9

MAX gene-associated protein isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12783.12783.2	2.8591	0.4442	1498.919	1498.7064	1	950.4	67.9%	1	K.IPGVSTPQTLAGTQK.F	2
	step02.7773.7773.2	2.7456	0.214	1798.651	1798.9724	1	487.6	50.0%	1	K.VLQSEGEAVDPEANVIK.Q	2 2
	step05.15003.15003.2	2.6048	0.2843	1288.303	1288.4774	1	1469.5	86.4%	2	R.ISNPSAFSIVPR.R	2 2
	step02.14568.14568.2	2.8058	0.2021	1965.544	1965.2153	13	228.2	34.2%	1	R.IVNVTSLATEGGLVDM*GGSK.Y	2 2
	step05.13992.13992.2	3.3319	0.3188	2179.233	2180.4246	1	583.1	47.5%	1	K.NTSGLPAEPESVSSPPTLHMK.T	2 2

Similarities: gi|256017159|ref|NP_0(4:1)

gi|118572613|ref|NP_0

2752

299616

12.1

serine/arginine repetitive matrix protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13072.13072.2	2.4046	0.3355	1362.795	1362.4764	2	511.9	70.0%	1	K.RPNPDILDHER.K	2
*	step03.1292.1292.2	2.2204	0.0941	2081.66	2081.8938	12	240.0	29.4%	1	K.LPQS#S#SSESSPPS#PQPTK.V	2
*	step02.12256.12256.2	4.1542	0.5417	2276.549	2276.3594	1	632.2	52.5%	2	R.FQSDSSSYPTVDSNSLLGQSR.L	2
*	step06.15408.15408.2	2.4504	0.1737	1379.49	1379.5469	1	960.1	76.9%	1	R.TPQAPASANLVGPR.S	2
*	step04.13081.13081.2	3.2701	0.4307	1301.498	1301.4745	1	993.4	80.8%	2	R.TAAALAPASLTSAR.M	2

gi|71361682|ref|NP_00

2115

238257

5.8

nuclear mitotic apparatus protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18828.18828.2	2.7121	0.3604	2194.31	2194.3413	80	203.9	27.5%	1	R.SQAPLESSLDSLGDVFLDSGR.K	2
*	step02.12071.12071.2	2.76	0.2339	2047.254	2046.1373	1	421.2	50.0%	1	K.KLDVEEPDSANSSFYSTR.S	2
*	step02.14608.14608.2	2.4647	0.2083	2507.0	2506.597	1	320.8	36.8%	1	R.NSFYMGTCQDEPEQLDDWNR.I	2

U	gi\|57863271\|ref\|NP_05	4	5	2.8%	1905	214823	7.4	hypothetical protein LOC23078 isoform a [Homo sapiens]
U	gi\|57863273\|ref\|NP_00	4	5	5.1%	1039	116940	8.2	hypothetical protein LOC23078 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.17588.17588.2	3.4105	0.3944	1508.652	1508.7477	1	854.3	79.2%	1	R.NVLPVLNNLLENR.E	2
step06.18808.18808.2	3.4363	0.4118	1035.502	1035.308	1	1494.8	94.4%	1	R.VIALGLPVPR.Y	2
step04.14238.14238.2	4.0163	0.3449	1142.458	1142.3337	1	1039.1	95.0%	2	R.VNAGTLAVLQR.L	2
step06.17022.17022.2	2.2003	0.0927	2206.776	2206.188	44	165.3	23.6%	1	K.LRET#QDPTAQSLAASLST#R.Q	2

gi|62241042|ref|NP_00

1512

170590

7.3

bifunctional aminoacyl-tRNA synthetase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18250.18252.2	4.8418	0.4223	1945.462	1945.1658	1	1470.0	65.6%	1	R.WFGFLEAQQAFQSVGTK.W	2
*	step04.13774.13774.2	2.5687	0.2118	1116.316	1116.2931	3	507.4	72.2%	2	R.LNLNNTVLSK.R	2
*	step05.12101.12101.2	3.1617	0.2007	1762.507	1763.054	143	172.2	31.0%	1	K.KVIDPVAPRY#VALLK.K	2

gi|22094135|ref|NP_11

1537

164855

9.2

histone-lysine N-methyltransferase, H3 lysine-79 specific [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.10646.10646.2	2.4335	0.1953	1685.875	1684.7305	1	599.7	40.4%	1	R.FANMKEGGRIVS#S#K.P	2
*	step04.15561.15561.2	2.3913	0.1492	1925.655	1925.9453	55	257.8	30.0%	1	K.S#CVPPDDALS#LHLRGK.G	2
*	step03.12918.12918.2	2.3143	0.1259	1427.755	1426.4282	42	219.9	39.6%	1	R.IVFT#ITTGAGS#AK.Q	2

U	gi\|207113160\|ref\|NP_0	3	6	2.8%	1488	152105	9.0	treacle protein isoform d [Homo sapiens]
U	gi\|57164979\|ref\|NP_00	3	6	4.3%	958	96757	5.6	treacle protein isoform c [Homo sapiens]
U	gi\|57164975\|ref\|NP_00	3	6	2.9%	1411	144314	9.0	treacle protein isoform b [Homo sapiens]
U	gi\|207113164\|ref\|NP_0	3	6	2.9%	1412	144413	9.0	treacle protein isoform f [Homo sapiens]
U	gi\|207113162\|ref\|NP_0	3	6	2.8%	1451	148352	8.9	treacle protein isoform e [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.13564.13564.2	4.1279	0.4355	1778.478	1779.0061	1	1807.5	64.7%	2	R.LASTNSSVLGADLPSSMK.E	2
step04.10453.10453.2	2.5329	0.3161	869.588	869.0437	2	749.4	87.5%	2	K.AGPVAVQVK.A	2
step05.12369.12369.2	2.9116	0.4542	1282.479	1282.4711	1	872.5	69.2%	2	K.GSLGQGTAPVLPGK.T	2

gi|5454158|ref|NP_006

1264

140476

7.6

valyl-tRNA synthetase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19133.19133.2	4.1468	0.2075	2204.23	2204.4844	1	1577.8	57.9%	1	R.SLPIVFDEFVDM*DFGTGAVK.I	2
*	step04.20418.20418.2	4.9738	0.4539	1955.789	1955.3086	1	1298.1	76.7%	2	R.LLSPFMPFVTEELFQR.L	2
*	step04.19004.19004.2	3.8661	0.4009	1971.681	1971.308	1	760.8	73.3%	2	R.LLSPFM*PFVTEELFQR.L	2

gi|102469034|ref|NP_0

1154

133277

7.5

tyrosine-protein kinase JAK1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17228.17228.2	5.4142	0.5031	2036.584	2036.267	1	1115.0	68.8%	2	R.ISPLCHNLFALYDENTK.L	2
*	step04.900.900.2	5.352	0.4903	1711.7	1710.9517	1	1901.2	78.6%	3	R.TSFQNLIEGFEALLK.-	2

gi|115387118|ref|NP_0

1117

125870

8.8

hypothetical protein LOC57562 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16326.16326.2	2.3187	0.0928	1369.725	1368.4556	19	446.5	42.4%	1	K.AAAIRDSIELT#K.E	2
*	step05.20016.20018.2	2.2668	0.1344	2397.313	2396.2568	19	247.5	25.0%	1	R.WFDETSNIENNAENS#HS#LK.N	2

U	gi\|111955084\|ref\|NP_0	2	3	2.8%	1080	121847	8.7	5-azacytidine-induced protein 1 isoform a [Homo sapiens]
U	gi\|111955162\|ref\|NP_0	2	3	2.9%	1044	117396	8.8	5-azacytidine-induced protein 1 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.19033.19033.2	2.7569	0.1115	1372.666	1372.4681	3	915.8	68.2%	2	K.GATWNVLDDQPR.G	2
	step06.17572.17572.2	2.7151	0.1849	2397.684	2398.3572	1	239.5	27.9%	1	K.YEAELS#ELEQS#ERKLQER.C	2

gi|52630449|ref|NP_11

1035

119032

6.1

ubiquitin carboxyl-terminal hydrolase 48 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11634.11634.2	3.3962	0.3843	2005.803	2006.1562	1	867.6	61.8%	2	R.IEVGDVNPSETQYISEPK.L	2
*	step04.14014.14014.2	2.631	0.3856	1158.363	1158.3732	1	936.5	80.0%	2	K.ALLVSANQTLK.E	2

gi|151301171|ref|NP_1

929

103582

9.1

transcription initiation factor TFIID subunit 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11052.11052.2	2.4646	0.0826	1020.057	1018.96545	204	240.6	46.4%	1	R.S#KS#PKSPK.S	2
*	step06.18436.18436.2	2.6803	0.1159	1923.575	1923.0946	32	210.6	31.4%	1	K.AVVADKTIEAS#IDAVIAR.A	2

gi|94536793|ref|NP_07

887

102999

9.3

tubulin polyglutamylase TTLL7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13928.13928.2	3.0521	0.1584	1438.818	1437.799	2	1061.4	66.7%	1	R.GVLLNALKLLNIR.T	2
*	step06.13782.13782.2	2.2046	0.1001	1527.802	1527.5161	12	328.4	40.9%	1	R.PFS#AQQM*ISVS#R.P	2

U	gi\|38683807\|ref\|NP_11	4	5	2.7%	2603	274256	6.5	ankyrin repeat domain-containing protein 17 isoform a [Homo sapiens]
U	gi\|38683816\|ref\|NP_94	4	5	3.0%	2352	246748	6.7	ankyrin repeat domain-containing protein 17 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16121.16121.2	3.6979	0.5365	1185.605	1185.3954	1	2259.1	90.9%	1	R.LEALLEAAGIGK.L	2 2 2
step04.17750.17751.2	4.818	0.4945	1993.02	1993.202	1	1023.6	69.4%	1	R.RLTSSVSCALDEAAAALTR.M	2 2 2
step02.17832.17832.2	4.8053	0.5875	2182.746	2183.4465	1	1539.5	62.5%	2	R.NVSDYTPLSLAASGGYVNIIK.I	2 2
step02.16656.16656.2	4.8153	0.5224	1880.949	1881.1002	1	1814.8	61.1%	1	K.TGLTPLMEAASGGYAEVGR.V	2 2

Similarities: gi|46519154|ref|NP_07(2:2)
gi|37620163|ref|NP_06(4:0)

gi|33946280|ref|NP_89

2.7%

1147

128734

4.6

protein virilizer homolog isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.18831.18831.2	5.0186	0.4647	1614.029	1612.9342	1	2221.9	88.5%	4	K.WVTALEEIPSLIIK.G	2 2
	step05.11405.11405.2	3.7378	0.3453	1893.075	1894.1486	1	613.1	62.5%	4	R.VLCNVACPPPPVEGQQK.D	2 2

Similarities: gi|33946282|ref|NP_05(2:0)

gi|73747844|ref|NP_00

2.7%

949

106018

9.2

DNA ligase 3 isoform beta precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.19815.19815.2	4.4574	0.5269	1676.507	1676.9352	1	1886.8	80.8%	2	K.SLLTIQEVDEFLLR.L	2 2
	step02.16400.16400.2	3.7736	0.4798	1298.698	1298.5536	1	2470.7	86.4%	2	R.VIQEGLEGLVLK.D	2 2

Similarities: gi|73747829|ref|NP_03(2:0)

U	gi\|25777600\|ref\|NP_00	2	3	2.7%	953	105836	5.4	26S proteasome non-ATPase regulatory subunit 1 isoform 1 [Homo sapiens]
U	gi\|300388183\|ref\|NP_0	2	3	2.8%	922	102258	5.3	26S proteasome non-ATPase regulatory subunit 1 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.19977.19977.3	4.1777	0.3294	2608.874	2608.9497	1	1483.9	34.0%	2	K.TNLYQDDAVTGEAAGLALGLVMLGSK.N	3
	step02.19972.19972.2	4.5314	0.5089	2608.955	2608.9497	1	923.8	42.0%	1	K.TNLYQDDAVTGEAAGLALGLVMLGSK.N	2

gi|222136639|ref|NP_0

2.7%

935

101531

7.3

C-1-tetrahydrofolate synthase, cytoplasmic [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19968.19968.2	2.3927	0.1125	1508.757	1508.8527	1	647.6	73.1%	2	R.M*FGIPVVVAVNAFK.T	2
*	step06.19379.19379.2	2.297	0.349	1170.254	1170.4287	1	562.4	80.0%	1	K.GVPTGFILPIR.D	2

gi|256574792|ref|NP_0

1873

210814

6.2

ankyrin repeat domain-containing protein 31 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.24637.24637.2	2.2268	0.1313	1627.635	1627.7114	19	381.2	33.3%	1	R.KEVTMTMTSEET#K.D	2
*	step02.11192.11192.2	2.2427	0.1503	2667.944	2667.6365	6	243.1	20.0%	1	K.RT#QVDDVDCNPRKILAVS#PS#R.R	2
*	step05.12761.12761.2	2.5548	0.1008	1748.13	1746.9534	19	252.7	35.7%	1	K.EIS#HKPGMKAGRINK.R	2

gi|310119144|ref|XP_0

1590

175712

6.8

PREDICTED: rootletin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18734.18734.2	2.2532	0.1211	2172.974	2172.3298	92	189.1	23.3%	1	R.WAPRASKLAQGGPGGS#GPIQR.A	2
	step04.14068.14068.2	2.291	0.0837	1768.521	1767.8817	16	215.2	39.3%	1	R.QELQGVEESREGLHR.E	2 2
	step01.9665.9665.1	1.831	0.1096	910.394	909.83246	13	276.6	60.0%	1	R.LCS#T#LR.R	1 1

Similarities: gi|310114346|ref|XP_0(2:1)

gi|4504191|ref|NP_000

1360

152785

6.9

DNA mismatch repair protein Msh6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16422.16422.2	4.3013	0.5506	2177.782	2177.3923	1	614.7	52.5%	1	R.SVAPAAPTSCDFSPGDLVWAK.M	2
*	step06.19580.19580.2	3.6204	0.4151	1741.773	1742.0537	1	711.1	67.9%	3	R.TLVAHYPPVQVLFEK.G	2

U	gi\|259906018\|ref\|NP_0	2	4	2.6%	1328	150583	6.4	apoptotic chromatin condensation inducer in the nucleus isoform 2 [Homo sapiens]
U	gi\|7662238\|ref\|NP_055	2	4	2.5%	1341	151887	6.4	apoptotic chromatin condensation inducer in the nucleus isoform 1 [Homo sapiens]
U	gi\|259906020\|ref\|NP_0	2	4	2.6%	1301	147388	6.7	apoptotic chromatin condensation inducer in the nucleus isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17307.17307.2	3.6645	0.3925	1721.789	1722.0623	1	951.7	63.3%	2	R.SAQPLPLKIEELALAK.G	2
	step04.17476.17478.2	5.1221	0.4459	2104.643	2104.4275	1	1243.1	73.5%	2	K.AAPCIYWLPLTDSQIVQK.E	2

gi|24041029|ref|NP_00

1153

131117

8.0

nitric oxide synthase, inducible [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.20702.20702.2	2.2018	0.1277	2039.332	2037.9705	86	98.6	20.0%	1	K.SPES#LVKLDAT#PLSS#PR.H	2
*	step03.15208.15208.2	2.3154	0.3151	1736.963	1736.9537	21	133.9	30.6%	1	K.S#LFM*LKELNNKFR.Y	2

gi|40807471|ref|NP_00

1162

129588

8.4

transcription termination factor 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13461.13461.2	2.6628	0.2334	1092.473	1091.1542	4	552.9	72.2%	1	K.GEGEEKKADK.K	2
*	step04.19562.19562.2	3.2242	0.3139	2279.236	2278.656	1	450.5	47.4%	1	R.WAVTGTPIQNNLLDMYSLLK.F	2

gi|157743284|ref|NP_7

1076

115077

6.5

serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16988.16988.2	3.9828	0.3708	1344.907	1344.5392	1	1898.7	86.4%	2	K.TLAETLVNLDVR.D	2
*	step06.17407.17407.2	5.0832	0.5369	1642.141	1640.8247	1	2245.5	76.7%	2	R.TPLHAAAFADNVSGLR.M	2

gi|256017159|ref|NP_0

2856

315218

6.8

MAX gene-associated protein isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.7773.7773.2	2.7456	0.214	1798.651	1798.9724	1	487.6	50.0%	1	K.VLQSEGEAVDPEANVIK.Q	2 2
step05.15003.15003.2	2.6048	0.2843	1288.303	1288.4774	1	1469.5	86.4%	2	R.ISNPSAFSIVPR.R	2 2
step02.14568.14568.2	2.8058	0.2021	1965.544	1965.2153	13	228.2	34.2%	1	R.IVNVTSLATEGGLVDM*GGSK.Y	2 2
step05.13992.13992.2	3.3319	0.3188	2179.233	2180.4246	1	583.1	47.5%	1	K.NTSGLPAEPESVSSPPTLHMK.T	2 2

Similarities: gi|256017163|ref|NP_0(4:0)

U	gi\|21264565\|ref\|NP_00	3	3	2.5%	2285	242042	6.7	AT-rich interactive domain-containing protein 1A isoform a [Homo sapiens]
U	gi\|21264575\|ref\|NP_62	3	3	2.7%	2068	218333	6.5	AT-rich interactive domain-containing protein 1A isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.15260.15260.2	2.2615	0.2899	1284.655	1284.4706	1	415.1	57.7%	1	R.AAGPGLGNVAM*GPR.Q	2
step05.12832.12832.2	2.4482	0.0801	1705.731	1704.709	1	466.0	42.2%	1	R.SSTLT#EDGAKSSEAIK.E	2
step03.18088.18090.3	5.0648	0.3545	3056.079	3055.3323	1	1217.2	34.0%	1	K.ILEDEPHSKDETPLCTLLDWQDSLAK.R	3

gi|149158690|ref|NP_5

2157

228861

9.5

large proline-rich protein BAT2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18781.18781.2	2.8658	0.3027	2417.111	2416.7158	3	256.7	33.3%	1	R.FPLEEPGPRPLPWPPGSDEVAK.I	2
*	step06.17965.17965.3	3.6663	0.3837	3002.749	3003.3535	12	542.0	22.5%	2	R.GSEGKPSLTLPASAPGPEEALTTVTVAPAPR.R	3

gi|110825988|ref|NP_0

1621

181674

7.1

probable methyltransferase TARBP1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18099.18099.2	2.2452	0.1464	2562.81	2562.955	1	255.7	30.4%	1	R.LAGRPQLAAALAEEALRDLLAGWR.A	2
*	step03.854.854.2	2.9851	0.0947	1814.404	1813.218	1	546.2	43.8%	1	R.LGKSISRLIVVASLIDK.P	2

U	gi\|157419150\|ref\|NP_0	2	2	2.5%	1452	163682	6.7	receptor-type tyrosine-protein phosphatase mu isoform 2 precursor [Homo sapiens]
U	gi\|157419152\|ref\|NP_0	2	2	2.5%	1465	165059	6.6	receptor-type tyrosine-protein phosphatase mu isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14746.14746.2	2.3604	0.1038	1795.565	1794.7668	23	349.0	32.1%	1	R.ANGET#KIDCVQVAT#K.G	2
	step02.10462.10462.2	3.137	0.1501	2679.629	2678.784	3	114.7	18.0%	1	K.VT#LIET#ELLAEY#VIRTFAVEK.R	2

U	gi\|24430149\|ref\|NP_70	2	3	2.5%	1391	155199	6.2	nuclear pore complex protein Nup155 isoform 1 [Homo sapiens]
U	gi\|4758844\|ref\|NP_004	2	3	2.6%	1332	149016	6.3	nuclear pore complex protein Nup155 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14576.14576.2	4.1695	0.339	1728.468	1728.9318	1	1477.6	64.7%	2	R.VASVSQNAIVSAAGNIAR.T	2
	step02.15808.15808.2	4.2923	0.4433	1955.534	1955.0742	1	867.3	62.5%	1	K.HGEPEEDIVGLQAFQER.L	2

U	gi\|21735569\|ref\|NP_07	2	2	2.5%	1339	151093	4.8	claspin isoform 1 [Homo sapiens]
U	gi\|299522984\|ref\|NP_0	2	2	2.7%	1275	144167	4.8	claspin isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15942.15942.2	2.2905	0.2801	1906.087	1906.0398	1	202.0	43.8%	1	R.LGADEDSFVILEPETNR.E	2
	step05.17099.17099.2	2.2851	0.1094	2050.29	2049.0454	110	132.5	25.0%	1	R.Y#LADGDLHS#DGPGRMRK.F	2

U	gi\|54112380\|ref\|NP_00	3	3	2.5%	1265	144768	8.4	lysine-specific demethylase 2B isoform b [Homo sapiens]
U	gi\|54112382\|ref\|NP_11	3	3	2.4%	1336	152614	8.6	lysine-specific demethylase 2B isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.18309.18309.2	2.207	0.0873	1955.412	1954.9884	60	181.2	28.6%	1	R.DKLY#NVISLEFSHT#K.L	2
step05.18317.18317.2	2.234	0.1104	1955.855	1954.9884	46	230.5	26.8%	1	R.DKLYNVIS#LEFSHT#K.L	2
step03.13624.13626.2	2.4701	0.1388	1887.453	1886.0809	145	76.0	27.1%	1	K.RGPGFKYAS#NLPGSLLK.E	2

gi|153791893|ref|NP_0

1171

130322

6.8

zinc finger BED domain-containing protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16037.16037.2	2.5349	0.2073	1146.16	1145.4011	1	1439.3	94.4%	1	R.MVQNLLSLAR.K	2
*	step03.15156.15156.2	2.358	0.1577	2419.529	2420.6409	25	155.6	22.2%	1	K.VEM*LFEETMGIDT#MLRS#LK.E	2

gi|11559929|ref|NP_05

874

97718

5.5

coatomer subunit gamma [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11601.11601.2	2.5536	0.2721	1187.85	1187.33	4	466.4	61.1%	1	R.VFNETPINPR.K	2
	step05.19290.19290.2	3.4946	0.4872	1245.475	1245.5338	1	1909.0	86.4%	2	R.SIATLAITTLLK.T	2 2

Similarities: gi|109134349|ref|NP_0(1:1)

U	gi\|310114346\|ref\|XP_0	2	2	2.5%	824	89794	8.5	PREDICTED: rootletin-like [Homo sapiens]
U	gi\|310126570\|ref\|XP_0	2	2	2.3%	899	98456	7.9	PREDICTED: hypothetical protein LOC100510050 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14068.14068.2	2.291	0.0837	1768.521	1767.8817	16	215.2	39.3%	1	R.QELQGVEESREGLHR.E	2 2
	step01.9665.9665.1	1.831	0.1096	910.394	909.83246	13	276.6	60.0%	1	R.LCS#T#LR.R	1 1

Similarities: gi|310119144|ref|XP_0(2:0)

gi|7662078|ref|NP_055

1564

175485

7.5

tetratricopeptide repeat protein 37 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19942.19942.2	2.2043	0.1303	2517.395	2517.5076	1	307.5	24.0%	1	K.QIS#KAVHS#NPGDPALWSLLS#R.V	2
*	step06.20117.20117.2	2.246	0.2859	1992.607	1993.1652	24	243.6	31.1%	1	R.AAEMCYRKSLQLAS#QR.G	2

gi|130484567|ref|NP_0

1435

162609

7.1

probable ATP-dependent DNA helicase HFM1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.17790.17790.2	3.3481	0.1031	1570.589	1571.7175	5	663.5	61.5%	2	K.DENRGPTLEVVVSR.M	2
*	step02.12086.12086.2	2.2362	0.0861	2488.034	2487.867	21	164.1	27.5%	1	K.TLNTLNKDPNRITIRFPMEGR.I	2

gi|32528306|ref|NP_00

1147

128183

9.4

replication factor C subunit 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18141.18141.2	2.4323	0.114	1489.009	1487.6185	21	382.9	43.3%	2	K.VENLLWVDKY#K.P	2
*	step02.15111.15111.2	3.0881	0.3344	1874.107	1874.0464	1	484.6	50.0%	1	K.HALIMDEVDGMAGNEDR.G	2

U	gi\|110224449\|ref\|NP_5	2	2	2.4%	1150	127617	7.1	solute carrier family 12 member 6 isoform a [Homo sapiens]
U	gi\|4826780\|ref\|NP_005	2	2	2.5%	1099	122091	6.9	solute carrier family 12 member 6 isoform b [Homo sapiens]
U	gi\|110224458\|ref\|NP_0	2	2	2.5%	1135	125993	7.2	solute carrier family 12 member 6 isoform e [Homo sapiens]
U	gi\|110224456\|ref\|NP_0	2	2	2.5%	1141	126594	7.1	solute carrier family 12 member 6 isoform d [Homo sapiens]
U	gi\|110224454\|ref\|NP_0	2	2	2.6%	1091	121125	7.1	solute carrier family 12 member 6 isoform c [Homo sapiens]
U	gi\|110224452\|ref\|NP_0	2	2	2.6%	1091	121125	7.1	solute carrier family 12 member 6 isoform c [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.8650.8650.2	2.2367	0.115	1656.045	1656.9093	23	206.9	34.6%	1	K.AKSMEGFQDLLNM*R.P	2
	step01.7629.7630.2	2.2046	0.0918	1598.271	1596.9199	14	242.0	42.3%	1	R.MHTAVKLNEVIVNK.S	2

gi|167234419|ref|NP_0

955

108666

10.2

thyroid hormone receptor-associated protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13279.13279.2	2.9497	0.2908	985.387	985.1627	1	1138.7	93.8%	2	K.SPLQSVVVR.R	2
*	step05.15069.15069.2	4.1314	0.4305	1490.037	1489.6997	1	1131.4	73.1%	2	K.SGKWEGLVYAPPGK.E	2

gi|11321601|ref|NP_00

784

85596

7.6

6-phosphofructokinase type C [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.12244.12244.2	2.3036	0.3149	1788.182	1789.0074	3	235.3	44.4%	1	K.AIGVLTSGGDAQGMNAAVR.A	2 2
	step03.11492.11492.2	4.2511	0.2699	1805.617	1805.007	1	465.2	55.6%	1	K.AIGVLTSGGDAQGM*NAAVR.A	2 2

Similarities: gi|48762920|ref|NP_00(2:0)

gi|83582809|ref|NP_06

710

82236

7.5

integrator complex subunit 10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19000.19000.2	3.4744	0.448	2037.808	2038.3723	1	905.0	65.6%	1	K.LFVCDVLPLIINNHDVR.L	2
*	step05.19047.19047.3	3.5561	0.4595	2039.285	2038.3723	1	791.5	46.9%	1	K.LFVCDVLPLIINNHDVR.L	3

U	gi\|289666754\|ref\|NP_6	2	4	2.4%	533	62728	8.0	zinc finger protein 548 isoform 2 [Homo sapiens]
U	gi\|289666756\|ref\|NP_0	2	4	2.4%	545	63970	7.9	zinc finger protein 548 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13142.13142.2	3.4808	0.4398	1393.321	1393.6288	1	1233.5	79.2%	2	R.LVCSMNVGNSLAK.T	2
	step04.10924.10924.2	3.8218	0.4141	1408.64	1409.6282	1	1190.6	75.0%	2	R.LVCSM*NVGNSLAK.T	2

gi|46358428|ref|NP_05

2.3%

1749

197575

6.1

intraflagellar transport protein 172 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13326.13326.2	3.3814	0.3681	2158.456	2158.3108	1	668.7	45.0%	1	R.EFTTAVSSPGGQSVVLGSYDR.L	2
*	step03.19246.19246.2	4.2904	0.4049	2108.108	2108.4211	1	543.8	52.8%	1	R.EELLANTELVEHITAALIK.G	2

gi|148277064|ref|NP_8

2.3%

1505

164187

5.9

protein CASP isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19124.19124.2	2.488	0.0999	1570.823	1570.8208	12	534.1	46.4%	1	R.RPGSLPAPPPSQLPR.N	2
*	step03.19244.19244.2	4.5581	0.5325	2091.741	2091.3938	1	1574.4	60.5%	1	R.LFGETILGLTQGSVSDLLAR.P	2

gi|4504919|ref|NP_002

2.3%

483

53704

5.6

keratin, type II cytoskeletal 8 [Homo sapiens] keratin 8; cytokeratin 8; keratin, type II cytoskeletal 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step04.16669.16669.2	3.6069	0.4658	1278.242	1278.4792	1	2038.3	90.0%	14	K.LALDIEIATYR.K	2 2

Similarities: gi|119395750|ref|NP_0(1:0)

gi|98986457|ref|NP_00

2035

208730

7.5

host cell factor 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12658.12658.2	2.2865	0.2978	1230.341	1229.4252	11	284.9	55.0%	1	K.LVIYGGM*SGCR.L	2
*	step04.12391.12391.2	2.639	0.2945	912.549	913.0965	1	446.4	75.0%	2	R.TQGVPAVLK.V	2
*	step04.10492.10492.2	2.8755	0.402	1432.414	1432.6283	1	1278.4	69.2%	2	K.VASSPVM*VSNPATR.M	2
*	step02.16704.16704.2	2.5641	0.2912	1336.05	1335.4894	2	1202.4	85.0%	1	K.ENQWFDVGVIK.G	2

gi|14670392|ref|NP_11

1483

170902

8.5

tyrosine-protein kinase BAZ1B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20686.20686.1	1.9307	0.0915	1980.116	1979.2634	17	133.3	28.1%	1	K.IVKIHPLEKVDEEATEK.K	1
*	step04.17379.17379.2	3.9324	0.4978	1794.614	1794.0853	1	1162.0	73.3%	1	K.LSEIPLTLHSVSELVR.L	2

gi|37674210|ref|NP_20

1423

158215

5.4

protein phosphatase Slingshot homolog 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18305.18305.2	2.5506	0.0839	1640.006	1639.6819	2	530.8	51.3%	1	R.PDSPALFTDIPT#ER.E	2
*	step06.17608.17608.2	2.3677	0.1089	1064.95	1065.3362	19	421.2	64.3%	2	K.LREIMM*QK.D	2
*	step02.10072.10072.1	2.0349	0.0954	1269.846	1269.276	24	330.9	48.1%	1	K.FPLDNCHAS#K.A	1

U	gi\|164607124\|ref\|NP_0	2	2	2.2%	1328	149323	6.7	Fanconi anemia group I protein isoform 1 [Homo sapiens]
U	gi\|82830440\|ref\|NP_06	2	2	2.3%	1268	142569	6.8	Fanconi anemia group I protein isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.1197.1197.2	2.6882	0.3877	1596.437	1596.9762	1	437.9	50.0%	1	K.SLELLPIILTALATK.K	2
	step03.11658.11658.2	2.6825	0.0934	1766.455	1765.9668	2	313.0	41.0%	1	K.QFY#EPKPDLLPPLK.L	2

gi|4826690|ref|NP_004

1220

139314

8.3

ATP-dependent RNA helicase DHX8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.17761.17761.2	3.9873	0.517	1936.767	1937.1852	1	1418.7	66.7%	2	K.FSQYFYEAPIFTIPGR.T	2
*	step04.19311.19311.2	3.3527	0.4051	1355.62	1355.607	1	947.1	80.0%	2	R.WLVEFAPAFFK.V	2

U	gi\|189011566\|ref\|NP_0	5	6	2.1%	2843	311646	7.8	adenomatous polyposis coli protein [Homo sapiens]
U	gi\|53759122\|ref\|NP_00	5	6	2.1%	2843	311646	7.8	adenomatous polyposis coli protein [Homo sapiens]
U	gi\|189011568\|ref\|NP_0	5	6	2.1%	2843	311646	7.8	adenomatous polyposis coli protein [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.15424.15424.2	3.6499	0.4592	1661.51	1661.8806	1	1231.4	71.4%	1	R.LKELNLDSSNFPGVK.L	2
step02.14046.14046.2	2.4465	0.2988	1584.022	1583.6787	1	385.5	66.7%	1	R.ESTGYLEELEKER.S	2
step02.19424.19424.2	4.7178	0.3435	1674.635	1674.8345	1	2697.7	78.6%	2	K.SESEDLQQVIASVLR.N	2
step02.19433.19433.3	4.5315	0.3256	1675.465	1674.8345	1	2948.2	58.9%	1	K.SESEDLQQVIASVLR.N	3
step03.17823.17823.2	2.7653	0.0829	1869.401	1868.7023	19	265.3	26.7%	1	R.S#PTGNT#PPVIDSVS#EK.A	2

gi|113722116|ref|NP_0

2.1%

1894

211103

6.5

plexin-A2 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15083.15083.2	2.4657	0.1433	2615.785	2616.6343	145	121.3	18.2%	1	R.SVVALVPKQT#SS#Y#NIPASASISR.T	2
	step05.13934.13934.2	2.6581	0.0907	1992.601	1991.2787	4	418.2	35.4%	2	R.GSKMVS#EIYLTRLLATK.G	2

gi|163965366|ref|NP_0

2.1%

2078

205419

9.6

nascent polypeptide-associated complex subunit alpha isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.5644.5645.2	2.7458	0.0917	1975.296	1975.0197	27	259.8	34.4%	1	K.QQFLPSS#PGLVLES#PSK.P	2
	step06.19576.19576.2	3.5437	0.3897	1550.699	1550.8661	1	1761.5	79.2%	2	K.NILFVITKPDVYK.S	2 2
	step02.14117.14117.2	4.8382	0.5159	1486.484	1485.6199	1	1701.4	84.6%	2	K.SPASDTYIVFGEAK.I	2 2

Similarities: gi|163965362|ref|NP_0(2:1)

gi|148368962|ref|NP_0

2.1%

1746

193105

6.9

tyrosine-protein kinase SgK269 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13934.13934.2	2.8794	0.1027	2203.751	2203.1443	53	209.0	23.6%	1	K.EIAGLDT#APQIRGNET#NSR.E	2
*	step02.14684.14684.2	2.2127	0.1265	2082.789	2082.3481	1	341.9	39.6%	1	K.KM*IIRANT#EPISKDLQK.S	2

U	gi\|183396783\|ref\|NP_0	2	4	2.1%	1721	188201	6.7	BCL-6 corepressor isoform a [Homo sapiens]
U	gi\|21071037\|ref\|NP_06	2	4	2.1%	1721	188201	6.7	BCL-6 corepressor isoform a [Homo sapiens]
U	gi\|183396787\|ref\|NP_0	2	4	2.1%	1755	192187	6.5	BCL-6 corepressor isoform c [Homo sapiens]
U	gi\|183396785\|ref\|NP_0	2	4	2.2%	1703	186234	6.8	BCL-6 corepressor isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.19254.19254.2	4.3393	0.4851	2197.727	2197.518	1	754.3	60.0%	2	R.SYLPYPAPEGIAVSPLSLHGK.G	2
	step02.13812.13812.2	3.1558	0.5141	1726.597	1726.8647	1	1217.3	73.3%	2	R.GLPLTGEYYVENADGK.V	2

U	gi\|148491080\|ref\|NP_0	2	2	2.1%	1723	182814	7.0	trinucleotide repeat-containing gene 6B protein isoform 2 [Homo sapiens]
U	gi\|241982729\|ref\|NP_0	2	2	2.0%	1833	194001	6.8	trinucleotide repeat-containing gene 6B protein isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.11246.11246.2	2.7647	0.3261	2070.299	2070.1504	1	488.9	44.4%	1	K.GSQCQSASSGNECNLGVWK.S	2
	step06.16058.16058.2	3.1246	0.3285	1989.822	1990.1217	1	533.2	47.1%	1	K.GHPLPENQGNAQAPCWGR.S	2

U	gi\|56550047\|ref\|NP_00	2	2	2.1%	1403	161509	6.9	uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 2 [Homo sapiens]
U	gi\|59850762\|ref\|NP_06	2	2	2.1%	1416	162504	7.0	uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.15021.15021.1	1.8745	0.1142	1308.797	1309.4247	103	132.4	44.4%	1	R.PT#ICQLLIDR.G	1
	step03.17595.17595.2	2.7876	0.1286	2498.01	2497.79	2	233.3	29.8%	1	K.VYLDNKLLKEQAHNLT#IEM*K.N	2

U	gi\|61676091\|ref\|NP_00	2	3	2.1%	283	33243	7.3	cyclin-C isoform a [Homo sapiens]
U	gi\|61676093\|ref\|NP_00	2	3	3.0%	198	22945	5.9	cyclin-C isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
7	step03.15396.15396.1	2.0486	0.1443	756.736	756.9565	3	335.2	80.0%	2	K.ILEIIR.V	1 1 1 1 1 1 1 1 1
7	step03.15391.15391.2	2.2222	0.1225	757.284	756.9565	1	366.8	90.0%	1	K.ILEIIR.V	2 2 2 2 2 2 2 2 2

gi|239735519|ref|NP_0

2.0%

1893

211047

7.1

myotubularin-related protein 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18831.18831.2	2.2192	0.2396	2024.474	2024.3074	3	262.0	41.2%	1	R.ISVQTPVDQLLQDGLQLR.S	2
*	step04.16478.16478.2	2.9803	0.3068	2098.903	2099.376	1	948.8	66.7%	1	R.SYPGLLIVPQSVQDNALQR.V	2

U	gi\|116805788\|ref\|NP_0	2	2	2.0%	1253	145673	7.1	cytoplasmic FMR1-interacting protein 2 [Homo sapiens]
U	gi\|82617634\|ref\|NP_00	2	2	2.0%	1253	145673	7.1	cytoplasmic FMR1-interacting protein 2 [Homo sapiens]
U	gi\|82617630\|ref\|NP_05	2	2	2.0%	1253	145673	7.1	cytoplasmic FMR1-interacting protein 2 [Homo sapiens]
U	gi\|24307969\|ref\|NP_05	2	2	2.0%	1253	145182	6.9	cytoplasmic FMR1-interacting protein 1 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.20265.20265.2	3.9942	0.3305	1440.591	1440.732	1	1917.3	86.4%	1	K.FINMFAVLDELK.N	2
	step04.14293.14293.2	2.2308	0.0805	1409.857	1409.6364	2	583.6	62.5%	1	R.AVGPSSTQLYMVR.T	2

U	gi\|34335262\|ref\|NP_89	2	4	2.0%	1188	131580	6.6	protein kinase C-binding protein 1 isoform a [Homo sapiens]
U	gi\|34335266\|ref\|NP_03	2	4	2.1%	1160	128371	6.4	protein kinase C-binding protein 1 isoform b [Homo sapiens]
U	gi\|34335264\|ref\|NP_89	2	4	2.1%	1135	125470	6.5	protein kinase C-binding protein 1 isoform c [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17502.17502.2	2.8705	0.4275	1234.74	1234.3867	1	1336.2	94.4%	2	K.FGVFNYSPFR.T	2
	step02.15354.15354.2	2.49	0.3375	1505.022	1505.6559	1	620.3	61.5%	2	K.TSTTGSILNLNLDR.S	2

gi|24308227|ref|NP_06

2.0%

1237

129529

8.2

zinc finger protein 687 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12186.12186.2	2.6796	0.4642	1198.484	1198.3942	1	577.3	75.0%	1	K.AVVLPGGTATSPK.M	2
*	step05.15852.15852.2	4.0262	0.4382	1249.96	1249.5275	1	1040.3	72.7%	2	K.NVLGLVPQALPK.A	2

U	gi\|291327485\|ref\|NP_0	2	2	2.0%	1145	127854	8.4	protein SMG7 isoform 5 [Homo sapiens]
U	gi\|42476070\|ref\|NP_96	2	2	2.1%	1091	122020	8.3	protein SMG7 isoform 2 [Homo sapiens]
U	gi\|42475558\|ref\|NP_77	2	2	2.0%	1137	127282	8.7	protein SMG7 isoform 1 [Homo sapiens]
U	gi\|291327487\|ref\|NP_9	2	2	2.0%	1178	131650	8.8	protein SMG7 isoform 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step03.17136.17136.2	2.2712	0.0885	2569.051	2568.6582	7	150.6	19.3%	1	R.HAAQLVPS#NGQPYNQLAILAS#SK.G	2
2	step03.17136.17136.2	2.2712	0.0885	2569.051	2568.6582	7	150.6	19.3%	1	R.HAAQLVPS#NGQPYNQLAILASS#K.G	2

gi|221136781|ref|NP_0

2.0%

995

111775

8.7

S1 RNA-binding domain-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8014.8014.2	2.8334	0.349	1245.166	1245.3645	1	666.5	83.3%	1	R.EVQQTLEELR.A	2
*	step04.14070.14070.2	2.6125	0.3147	1214.492	1214.3488	1	1760.2	88.9%	1	K.SFQQCAGFIR.I	2

gi|21493024|ref|NP_65

1.9%

1684

181688

4.4

A-kinase anchor protein 12 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15129.15129.2	2.52	0.1581	2211.831	2211.268	34	222.4	22.2%	1	-.MLGTIT#IT#VGQRDSEDVSK.R	2
	step06.17432.17432.2	2.2132	0.0865	1708.582	1708.551	107	182.6	31.2%	1	R.RPS#ES#DKEDELDK.V	2

gi|33598968|ref|NP_00

1.9%

1349

153670

7.8

LIM domain only protein 7 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11464.11464.2	2.2344	0.1848	1683.578	1682.4069	3	195.3	31.7%	1	R.EDS#FESLDS#LGS#R.S	2
	step06.15340.15340.2	2.2323	0.1449	1358.526	1359.4277	3	390.1	54.5%	1	R.RGESLDNLDSPR.S	2

U	gi\|153791352\|ref\|NP_0	2	13	1.9%	1075	121444	6.2	POTE ankyrin domain family member F [Homo sapiens]
U	gi\|88953571\|ref\|XP_93	2	13	1.9%	1075	121282	6.2	PREDICTED: POTE ankyrin domain family member I isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15010.15010.2	2.246	0.4034	946.346	946.1282	1	814.4	87.5%	1	R.AVFPSIVGR.P	2 2 2 2 2
	step06.26382.26382.2	3.2223	0.3938	1516.338	1516.6869	1	975.8	85.0%	12	K.IWHHTFYNELR.V	2 2 2 2 2

gi|193211480|ref|NP_0

1.9%

1042

117805

6.5

superkiller viralicidic activity 2-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16527.16527.2	2.5495	0.4604	1251.737	1251.4521	1	803.1	83.3%	1	K.YCLPFLQPGR.L	2
*	step03.12724.12724.2	2.9894	0.4046	1098.396	1098.2778	1	1159.0	88.9%	2	K.LTEQLAGPLR.Q	2

U	gi\|167830433\|ref\|NP_0	2	3	1.9%	1008	114760	7.7	probable ATP-dependent RNA helicase DHX36 isoform 1 [Homo sapiens]
U	gi\|167830436\|ref\|NP_0	2	3	1.9%	994	113153	7.7	probable ATP-dependent RNA helicase DHX36 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17218.17218.2	3.5836	0.4128	1098.474	1097.2915	1	1109.2	94.4%	2	R.LGGIAYFLSR.L	2
	step06.16192.16192.2	2.7308	0.2719	990.419	990.1809	1	521.1	81.2%	1	R.LPVEPHIGK.M	2

U	gi\|4502353\|ref\|NP_001	2	2	1.9%	736	81958	5.0	transcription regulator protein BACH1 isoform a [Homo sapiens]
U	gi\|45827690\|ref\|NP_99	2	2	1.9%	736	81958	5.0	transcription regulator protein BACH1 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12753.12753.2	3.1368	0.1189	1646.766	1647.6127	11	259.3	38.9%	1	K.FLDS#TADQQECPR.K	2
	step05.13990.13990.2	2.6729	0.202	1774.725	1775.7856	1	493.4	41.0%	1	K.FLDS#TADQQECPRK.K	2

U	gi\|20357572\|ref\|NP_05	2	2	1.9%	586	64256	8.6	APOBEC1 complementation factor isoform 1 [Homo sapiens]
U	gi\|20357578\|ref\|NP_62	2	2	1.9%	594	65024	8.2	APOBEC1 complementation factor isoform 3 [Homo sapiens]
U	gi\|20357575\|ref\|NP_62	2	2	1.9%	594	65202	8.5	APOBEC1 complementation factor isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.12590.12590.2	2.5464	0.1489	1269.606	1268.4672	15	514.7	53.3%	1	R.LFVGGIPKT#KK.R	2
	step02.9465.9465.1	2.2098	0.1097	1269.656	1268.4672	22	320.3	43.3%	1	R.LFVGGIPKT#KK.R	1

U	gi\|38788260\|ref\|NP_00	3	3	1.8%	2903	322217	6.4	nucleosome-remodeling factor subunit BPTF isoform 2 [Homo sapiens]
U	gi\|38788274\|ref\|NP_87	3	3	1.7%	2920	325123	7.1	nucleosome-remodeling factor subunit BPTF isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.19189.19189.2	3.5681	0.3943	1878.955	1879.1919	1	941.6	60.0%	1	K.VLQFLVDQFLTTNIAR.E	2
step04.10348.10348.2	2.902	0.1472	2013.591	2014.1831	1	417.5	40.0%	1	R.GQPVSTAVSAPNTVSSTPGQK.S	2
step05.18573.18573.2	2.3367	0.1311	1914.758	1914.9413	8	250.3	32.7%	1	R.Y#Y#EKLTEFVADM*TK.I	2

gi|114205410|ref|NP_0

1.8%

1406

155769

5.9

hypothetical protein LOC51059 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17093.17093.2	2.2054	0.1141	1393.732	1393.6631	8	396.9	54.5%	1	R.VTLKVSSRIPHR.L	2
*	step06.16592.16592.2	2.6762	0.0956	1606.566	1605.6857	4	335.5	44.4%	1	R.MEDALS#EVDFQLK.V	2

gi|61676188|ref|NP_11

4374

481896

5.2

E3 ubiquitin-protein ligase HUWE1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18560.18560.2	2.6666	0.3301	1960.975	1961.2448	1	347.6	41.2%	1	R.EVLGSLPNVFSALCLNAR.G	2
*	step03.10741.10741.2	5.186	0.4578	1899.113	1897.9794	1	762.7	47.6%	2	R.SAATSGAGSTTSGVVSGSLGSR.E	2
*	step05.18684.18684.2	5.6048	0.537	2239.671	2238.57	1	1134.4	52.4%	2	R.LLGPSAAADILQLSSSLPLQSR.G	2
*	step05.18099.18099.2	2.778	0.3718	1411.833	1411.7118	1	708.6	66.7%	3	R.LLSLISIALPENK.V	2

U	gi\|29294649\|ref\|NP_08	3	5	1.7%	1922	218680	5.7	endoribonuclease Dicer isoform 1 [Homo sapiens]
U	gi\|29294651\|ref\|NP_80	3	5	1.7%	1922	218680	5.7	endoribonuclease Dicer isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
7	step03.15396.15396.1	2.0486	0.1443	756.736	756.9565	3	335.2	80.0%	2	K.LLEILR.K	1 1 1 1 1 1 1 1 1
7	step03.15391.15391.2	2.2222	0.1225	757.284	756.9565	1	366.8	90.0%	1	K.LLEILR.K	2 2 2 2 2 2 2 2 2
	step05.19818.19818.2	4.5088	0.5737	2712.347	2713.0393	1	1216.0	50.0%	2	R.TLGPNPGLILQALTLSNASDGFNLER.L	2

gi|27597090|ref|NP_00

1726

199071

4.9

transcription elongation factor SPT6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20162.20162.2	3.1203	0.4394	1668.59	1668.8782	1	1193.7	75.0%	1	R.NQHFEVPFIAFYR.K	2
*	step03.10314.10314.2	2.4532	0.2182	1844.85	1843.9319	11	169.0	46.9%	1	K.DHYQDPVPGITPSSSSR.T	2

gi|222537750|ref|NP_0

1392

158048

6.4

ankyrin repeat domain-containing protein 30B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16150.16150.2	2.3462	0.1144	2188.291	2188.2925	39	115.0	26.5%	1	K.LEES#PVKDGLLKPT#CGRK.V	2
2	step02.8163.8163.1	1.8591	0.1539	704.699	704.90186	1	253.5	80.0%	2	K.EIAMLK.L	1 1

Similarities: gi|38505218|ref|NP_11(1:1)

gi|32469511|ref|NP_86

480

51618

9.0

B-cell CLL/lymphoma 6 member B protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.17356.17356.1	2.2012	0.1266	969.704	970.15295	1	380.0	78.6%	8	R.FVQVAHLR.A	1 1 1
	step06.21372.21372.2	3.0054	0.2406	971.437	970.15295	1	1018.7	92.9%	49	R.FVQVAHLR.A	2 2 2

Similarities: gi|197927147|ref|NP_0(2:0)
gi|195927002|ref|NP_0(2:0)

U	gi\|310114449\|ref\|XP_0	2	2	1.6%	2970	330736	5.2	PREDICTED: hypothetical protein LOC131544 [Homo sapiens]
U	gi\|310127697\|ref\|XP_0	2	2	1.6%	2970	330632	5.2	PREDICTED: hypothetical protein LOC131544 [Homo sapiens]
U	gi\|310119242\|ref\|XP_0	2	2	1.6%	2970	330632	5.2	PREDICTED: hypothetical protein LOC131544 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.17886.17886.3	3.7493	0.1271	3568.679	3569.6592	91	240.1	15.1%	1	K.NPSEVTLTEIQQT#EGLEEQGMENMS#EVKEK.P	3
	step02.18599.18599.2	2.5156	0.1184	2262.501	2261.2432	15	207.2	22.4%	1	K.T#S#FLQKSDLTSKLHS#SLK.S	2

U	gi\|134948558\|ref\|NP_0	2	3	1.6%	2062	235649	7.0	ankyrin repeat domain-containing protein 12 isoform 1 [Homo sapiens]
U	gi\|134948605\|ref\|NP_0	2	3	1.6%	2039	233010	7.1	ankyrin repeat domain-containing protein 12 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12676.12676.2	2.7801	0.1053	1812.22	1810.8846	18	172.4	38.5%	2	K.S#KHQKDFHLEFGEK.S	2
	step02.16829.16829.2	3.1023	0.098	2314.092	2313.187	1	494.1	30.6%	1	K.ELTRS#KSSEVTDAY#T#KEK.Q	2

gi|4758012|ref|NP_004

1.6%

1675

191613

5.7

clathrin heavy chain 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18771.18771.2	2.2855	0.3123	1111.881	1111.3613	1	612.1	93.8%	1	K.LLLPWLEAR.I	2
	step02.19919.19919.2	2.6613	0.3119	1963.021	1964.2689	1	531.2	50.0%	1	K.AFM*TADLPNELIELLEK.I	2

U	gi\|187937176\|ref\|NP_0	2	2	1.6%	1037	118303	6.6	NACHT, LRR and PYD domains-containing protein 7 isoform 3 [Homo sapiens]
U	gi\|8923473\|ref\|NP_060	2	2	1.6%	1062	120515	6.1	NACHT, LRR and PYD domains-containing protein 2 isoform 1 [Homo sapiens]
U	gi\|75709196\|ref\|NP_99	2	2	1.7%	980	111807	6.2	NACHT, LRR and PYD domains-containing protein 7 isoform 2 [Homo sapiens]
U	gi\|46049100\|ref\|NP_63	2	2	1.7%	1009	114845	6.5	NACHT, LRR and PYD domains-containing protein 7 isoform 1 [Homo sapiens]
U	gi\|291463280\|ref\|NP_0	2	2	1.6%	1039	117883	6.2	NACHT, LRR and PYD domains-containing protein 2 isoform 3 [Homo sapiens]
U	gi\|291463278\|ref\|NP_0	2	2	1.6%	1040	118138	5.9	NACHT, LRR and PYD domains-containing protein 2 isoform 2 [Homo sapiens]
U	gi\|291463275\|ref\|NP_0	2	2	1.6%	1062	120515	6.1	NACHT, LRR and PYD domains-containing protein 2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.24281.24281.2	2.994	0.1652	1970.637	1970.2302	19	314.5	37.5%	1	R.AKELEATFGCRM*SPDIK.Q	2
	step05.13758.13758.2	2.512	0.1287	1834.949	1834.9596	11	335.2	38.1%	1	K.ELEATFGCRMS#PDIK.Q	2

gi|8923763|ref|NP_060

1.6%

381

44349

9.4

arf-GAP with dual PH domain-containing protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*7	step03.15396.15396.1	2.0486	0.1443	756.736	756.9565	3	335.2	80.0%	2	R.LLELLR.A	1 1 1 1 1 1 1 1 1
*7	step03.15391.15391.2	2.2222	0.1225	757.284	756.9565	1	366.8	90.0%	1	R.LLELLR.A	2 2 2 2 2 2 2 2 2

U	gi\|105990514\|ref\|NP_0	3	4	1.5%	2602	278162	5.7	filamin-B isoform 2 [Homo sapiens]
U	gi\|256222415\|ref\|NP_0	3	4	1.6%	2578	275666	5.8	filamin-B isoform 4 [Homo sapiens]
U	gi\|256222413\|ref\|NP_0	3	4	1.5%	2591	276936	5.7	filamin-B isoform 3 [Homo sapiens]
U	gi\|256222411\|ref\|NP_0	3	4	1.5%	2633	281633	5.7	filamin-B isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.18888.18888.2	3.5668	0.4049	1227.638	1227.5186	1	1128.8	90.0%	2	R.LIALLEVLSQK.R	2 2 2
step04.16075.16075.2	2.7593	0.107	1503.905	1502.7367	2	579.1	57.1%	1	K.SPFTVGVAAPLDLSK.I	2
step02.8715.8715.2	2.3019	0.0822	1737.08	1735.7092	1	537.2	36.5%	1	K.Y#NDKHIPGS#PFTAK.I	2

Similarities: gi|116063573|ref|NP_0(1:2)
gi|116805322|ref|NP_0(1:2)

gi|119393899|ref|NP_0

1.5%

1580

169862

7.4

zinc finger protein GLI3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18030.18030.2	2.2375	0.1297	1563.995	1562.7839	7	403.4	54.2%	1	R.EECLQVKTVKAEK.P	2
*	step02.9932.9932.2	2.2978	0.1246	1329.542	1330.4122	2	321.2	48.1%	1	K.RS#LVLQNYTR.P	2

gi|199562283|ref|NP_0

1.5%

1358

155047

5.2

retrotransposon-like protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step06.21034.21034.2	2.5529	0.0995	2632.873	2631.687	14	232.6	21.2%	1	-.MIEPSEDSFET#M*MEHKNPS#SK.Q	2
*2	step06.21034.21034.2	2.5529	0.0995	2632.873	2631.687	14	232.6	21.2%	1	-.MIEPSEDSFET#M*MEHKNPSS#K.Q	2

gi|10863997|ref|NP_06

1.5%

531

57491

8.7

polypyrimidine tract-binding protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step04.15950.15950.2	3.1206	0.2802	931.994	932.20636	1	752.2	92.9%	2	K.VTNILMLK.G	2 2 2
*2	step04.15302.15302.2	3.3864	0.2907	948.205	948.20575	1	835.8	92.9%	2	K.VTNILM*LK.G	2 2 2

Similarities: gi|14165464|ref|NP_11(2:0)
gi|255003738|ref|NP_0(2:0)

U	gi\|255003738\|ref\|NP_0	2	4	1.5%	524	56821	9.2	regulator of differentiation 1 isoform 2 [Homo sapiens]
U	gi\|38569466\|ref\|NP_00	2	4	1.4%	552	59690	9.0	regulator of differentiation 1 isoform 1 [Homo sapiens]
U	gi\|255003744\|ref\|NP_0	2	4	1.4%	555	60009	9.0	regulator of differentiation 1 isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step04.15950.15950.2	3.1206	0.2802	931.994	932.20636	1	752.2	92.9%	2	K.VTNLLMLK.G	2 2 2
2	step04.15302.15302.2	3.3864	0.2907	948.205	948.20575	1	835.8	92.9%	2	K.VTNLLM*LK.G	2 2 2

Similarities: gi|14165464|ref|NP_11(2:0)
gi|10863997|ref|NP_06(2:0)

U	gi\|189217425\|ref\|NP_0	2	2	1.4%	3277	360213	7.2	laminin subunit alpha-3 isoform 3 [Homo sapiens]
U	gi\|38045910\|ref\|NP_93	2	2	1.4%	3333	366651	7.2	laminin subunit alpha-3 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14674.14674.3	3.7604	0.1054	3262.593	3262.1157	4	437.5	19.6%	1	K.LVGGPT#APGS#GHTIQGQFCDY#CNSEDPR.K	3
	step04.14140.14140.2	2.2324	0.1673	1915.539	1914.8582	30	181.2	36.1%	1	K.VTAS#MDSGAGGTSTSVT#PK.Q	2

gi|124378039|ref|NP_0

1.4%

2357

251891

5.8

protein transport protein Sec16A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.4774.4774.2	2.3468	0.2444	1273.705	1274.1539	2	451.3	45.0%	1	R.NPS#SAAPVQS#R.G	2
*	step05.20559.20559.2	3.9003	0.4932	2366.025	2365.6938	1	478.3	47.5%	2	R.FANSLPINDPLQTVYQLMSGR.M	2

U	gi\|194272180\|ref\|NP_0	2	2	1.4%	2135	232296	5.5	plexin-B1 precursor [Homo sapiens]
U	gi\|40254442\|ref\|NP_00	2	2	1.4%	2135	232296	5.5	plexin-B1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.17316.17316.2	2.2997	0.1438	2241.797	2242.3892	125	108.5	21.1%	1	R.HKPGSVFSVEGENLDLAM*S#K.E	2
	step02.12489.12489.1	1.9868	0.0916	1265.023	1264.3676	20	297.9	41.7%	1	K.EKM*LDQLY#K.G	1

U	gi\|295054210\|ref\|NP_0	2	2	1.3%	2446	271688	5.4	telomere-associated protein RIF1 isoform 2 [Homo sapiens]
U	gi\|56676335\|ref\|NP_06	2	2	1.3%	2472	274464	5.5	telomere-associated protein RIF1 isoform 1 [Homo sapiens]
U	gi\|295054220\|ref\|NP_0	2	2	1.3%	2446	271688	5.4	telomere-associated protein RIF1 isoform 2 [Homo sapiens]
U	gi\|295054215\|ref\|NP_0	2	2	1.3%	2446	271688	5.4	telomere-associated protein RIF1 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.8091.8091.2	2.8014	0.2185	1710.217	1709.8975	1	560.8	64.3%	1	R.M*TGEEGKEVITEIEK.K	2
	step05.17328.17330.2	3.6349	0.359	2090.505	2090.5789	1	628.6	55.9%	1	K.VMMLVYPEELKPVLTQAK.Q	2

gi|114155142|ref|NP_0

2363

267290

5.0

nucleoprotein TPR [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19006.19006.2	2.4553	0.1429	1850.828	1849.791	3	438.3	31.2%	1	K.RY#EM*LQDNVEGY#R.R	2
*	step05.20405.20405.2	4.5214	0.3578	2025.67	2025.3385	1	2361.4	70.6%	1	R.GQNLLLTNLQTIQGILER.S	2

gi|148746195|ref|NP_0

1943

253922

5.8

trichohyalin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13113.13113.2	2.4843	0.0901	1788.843	1789.7822	95	246.9	33.3%	1	K.QRYRDEDQRS#DLK.W	2
*	step03.2186.2186.2	3.1483	0.099	1605.556	1605.6412	1	853.0	63.6%	1	R.EEQELWQEEEQK.R	2

gi|74959747|ref|NP_06

2048

232190

6.1

Fanconi anemia group M protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16296.16296.2	2.2749	0.208	1894.143	1893.0284	35	230.0	33.9%	1	R.VLFLT#PQVMVNDLS#R.G	2
*	step02.15454.15454.2	2.6935	0.113	1569.968	1569.5115	9	380.9	36.4%	1	R.RSQS#EM*LNS#VNK.N	2

gi|153251865|ref|NP_1

1984

224320

10.1

hypothetical protein LOC84226 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step02.15563.15563.2	2.2723	0.1368	3045.486	3046.0725	17	167.6	15.0%	1	K.NQT#TLLGT#T#HKNPKAGQVWRPEATR.-	2
*2	step02.15563.15563.2	2.2723	0.1368	3045.486	3046.0725	17	167.6	15.0%	1	K.NQTT#LLGT#T#HKNPKAGQVWRPEATR.-	2

gi|27436910|ref|NP_07

1186

131295

6.4

partner and localizer of BRCA2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.6466.6466.2	2.7521	0.118	1895.665	1894.9994	1	532.0	41.7%	1	K.MTVS#T#DNLLVNKAISK.S	2
*	step01.4681.4681.2	3.0505	0.1478	1976.111	1974.9794	1	342.3	36.0%	3	K.MTVS#T#DNLLVNKAIS#K.S	2

gi|221219020|ref|NP_1

2873

333185

7.3

WD repeat-containing protein 87 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17822.17822.2	2.4191	0.1173	1993.335	1993.162	2	468.3	37.5%	1	K.VINEETT#PPVMEQPVTK.K	2
*	step02.18836.18836.2	2.5005	0.1011	2083.798	2083.3738	6	406.9	43.8%	1	R.M*INKEEKMTEEESKLAR.K	2

gi|153945728|ref|NP_0

2468

270632

4.8

microtubule-associated protein 1B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.9077.9077.2	2.7219	0.1539	1254.624	1254.4576	7	587.3	63.6%	1	K.DLTGQVPTPVVK.Q	2
*	step03.11960.11960.2	3.8194	0.393	1990.389	1991.1033	1	572.1	53.1%	2	K.TPGDFSYAYQKPEETTR.S	2

U	gi\|256222280\|ref\|NP_0	2	2	1.2%	1941	217463	8.7	ankyrin repeat domain-containing protein 36A [Homo sapiens]
U	gi\|310118966\|ref\|XP_0	2	2	1.2%	1941	218096	8.1	PREDICTED: ankyrin repeat domain-containing protein 36C isoform 1 [Homo sapiens]
U	gi\|310114187\|ref\|XP_0	2	3	1.1%	2101	233241	8.7	PREDICTED: ankyrin repeat domain-containing protein 36A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.16599.16599.1	2.0704	0.1203	1210.746	1210.1277	3	434.3	50.0%	1	R.PPLS#T#LT#LK.E	1
	step05.16385.16385.2	2.2381	0.1327	1811.225	1811.5677	98	271.6	30.8%	1	K.AT#SDEKDS#FS#NITR.G	2

gi|222831595|ref|NP_0

1712

197852

7.6

probable ATP-dependent RNA helicase DDX60 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12644.12644.1	1.9159	0.1341	1298.224	1297.462	51	239.5	42.4%	1	K.LS#ALAPLFGSLK.W	1
*	step03.10476.10476.2	2.5848	0.1288	1080.833	1080.0073	1	538.4	68.8%	1	K.Y#S#VGIGPAR.F	2

gi|31377581|ref|NP_68

973

110097

6.6

EF-hand domain-containing protein C17orf57 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.22128.22128.2	2.4641	0.1877	1390.268	1389.615	5	500.2	50.0%	20	K.LSSVAGCYLKYK.K	2

gi|33350932|ref|NP_00

1.1%

4646

532412

6.4

cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.21048.21048.2	3.4468	0.3139	2125.779	2124.5117	1	1092.4	55.6%	1	R.GIFEALRPLETLPVEGLIR.I	2
*	step02.19930.19930.2	4.2139	0.527	2266.956	2266.4924	1	729.0	60.5%	2	R.ENFIPTIVNFSAEEISDAIR.E	2
*	step02.14086.14086.2	2.7304	0.1685	1866.67	1865.9396	1	395.2	42.3%	2	K.QT#NYLRT#LINELVK.G	2

gi|113413200|ref|XP_9

1.1%

1038

117390

6.0

PREDICTED: POTE ankyrin domain family member J [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.26382.26382.2	3.2223	0.3938	1516.338	1516.6869	1	975.8	85.0%	12	K.IWHHTFYNELR.V	2 2 2 2 2

Similarities: gi|4501885|ref|NP_001(1:0)
gi|4501881|ref|NP_001(1:0)
gi|134133226|ref|NP_0(1:0)
gi|153791352|ref|NP_0(1:0)

gi|148886692|ref|NP_0

4557

501983

4.9

protocadherin Fat 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17322.17322.2	2.8444	0.1339	2107.718	2107.0967	6	168.0	30.4%	1	K.ELDY#EKQQFY#NLTVR.A	2
*	step04.12126.12126.2	2.6904	0.0804	1665.486	1664.8861	5	531.8	46.4%	1	R.ITSGNPQNFFAINIK.T	2
*	step03.16792.16792.2	2.2255	0.1004	1746.654	1745.7855	11	276.9	34.6%	1	R.KQFT#AGSYDILT#IK.A	2

gi|156119615|ref|NP_0

2548

292704

8.9

myosin-IXa [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.9898.9898.2	2.274	0.1707	1831.223	1831.1304	1	310.5	40.5%	1	R.LQLAM*EMVGFLPKT#R.R	2
*	step06.35472.35472.2	2.2241	0.0889	1360.535	1359.385	3	449.2	47.5%	1	R.PDIVALLRS#S#K.N	2

U	gi\|114326455\|ref\|NP_0	2	2	1.0%	2302	262345	6.7	chromodomain-helicase-DNA-binding protein 8 isoform 2 [Homo sapiens]
U	gi\|282165704\|ref\|NP_0	2	2	0.9%	2581	290518	6.5	chromodomain-helicase-DNA-binding protein 8 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
5	step04.12412.12412.1	1.8908	0.1788	685.68	685.87823	1	568.1	80.0%	1	K.LQAILK.P	1 1 1
	step06.16489.16489.2	2.8828	0.3008	1975.257	1974.214	2	213.4	41.2%	1	R.MNYMQNHQAGAPAPSLSR.C	2

Similarities: gi|4506457|ref|NP_002(1:1)
gi|153792694|ref|NP_0(1:1)

gi|34787409|ref|NP_06

1494

166798

6.8

ral GTPase-activating protein subunit beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19342.19342.2	2.2722	0.0877	1761.614	1761.6616	3	409.4	32.9%	1	K.ATMKT#S#T#VSTAHASK.V	2
*	step05.16892.16892.2	2.594	0.1107	1762.199	1761.6616	2	416.0	30.0%	3	K.ATMKT#STVS#T#AHASK.V	2

gi|145580592|ref|NP_6

975

112216

6.2

nesprin-3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.9164.9164.2	2.7921	0.1201	1273.383	1272.4362	9	690.9	63.0%	1	K.KMVFT#NNIPK.S	2
*	step02.11408.11408.2	2.3076	0.1188	1289.544	1288.4355	27	473.1	55.6%	1	K.KM*VFT#NNIPK.S	2

gi|156766050|ref|NP_6

5795

616641

5.4

protein AHNAK2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13571.13571.2	2.4898	0.0977	2717.201	2717.9504	33	92.8	22.9%	1	K.FKMLSFGVS#ALGKSIEASADVS#ALK.V	2
*	step04.171.171.2	2.2402	0.0816	2509.037	2508.6245	7	251.6	25.0%	1	K.MPS#YRAS#APGKSIQASVDVSAPK.A	2

gi|170016061|ref|NP_0

3639

413024

6.6

spectrin beta chain, brain 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16064.16064.2	2.5151	0.2426	1407.405	1407.4055	4	279.0	51.5%	2	R.HEAAESELLAT#R.R	2
*	step04.14289.14289.2	2.5711	0.0868	1863.398	1862.8235	184	202.2	29.2%	2	K.AATAESQDY#GQDLEGVK.V	2

gi|110611228|ref|NP_0

3433

394467

5.3

utrophin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19925.19925.2	3.7891	0.2785	1747.745	1746.8975	1	2386.9	76.7%	1	K.TDAVNEALESLESVLR.H	2
*	step06.18853.18853.2	2.7747	0.0895	1653.54	1653.8651	2	810.8	66.7%	1	K.FQLFQKPANFEQR.M	2

U	gi\|116805322\|ref\|NP_0	2	3	0.8%	2725	291020	6.0	filamin-C isoform a [Homo sapiens]
U	gi\|188595687\|ref\|NP_0	2	3	0.9%	2692	287279	6.0	filamin-C isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.18888.18888.2	3.5668	0.4049	1227.638	1227.5186	1	1128.8	90.0%	2	R.LIALLEVLSQK.R	2 2 2
	step03.5246.5246.2	2.5048	0.1626	1372.967	1373.667	39	359.9	59.1%	1	R.PFNLVIPFAVQK.G	2

Similarities: gi|116063573|ref|NP_0(1:1)
gi|105990514|ref|NP_0(1:1)

gi|62988361|ref|NP_00